Array 1 18603-20413 **** Predicted by CRISPRDetect 2.4 *** >NZ_AWTT01000038.1 Paucilactobacillus wasatchensis strain WDC04 contig00038, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 18603 29 100.0 32 ............................. AGGAGGTAGCTAAAAATGGCTACAGAAAACAA 18664 29 100.0 32 ............................. GTAAAGCTTGCTGATGATGACAAGCGACTTGA 18725 29 100.0 32 ............................. CAGTTAATCCGTGCAAGAATATATAGACAGCA 18786 29 100.0 32 ............................. TTAACTACTCATGATGGCGATGTTAACGAAAT 18847 29 96.6 32 ............................C CACACGGTGACATTATGTTAATGCCAAAATGA 18908 29 100.0 32 ............................. ATCAAAAATATTCTGTCGACTAGTAGTCAATC 18969 29 100.0 32 ............................. ATCAACCCCGTTGCCACGAAGTACCTTTGCTA 19030 29 100.0 32 ............................. AGCTAAGTCTTCCGGATCTAAACACAAGACTA 19091 29 96.6 32 ............................C ATGTGGCATATTGTAGCAAAACAGGACACTGG C,G [19100,19114] 19154 29 100.0 32 ............................. ACTTCGGGACGCATAAAGATTCTACATTTGCA C [19163] 19216 29 100.0 32 ............................. CATTGAGAAGTTATCGAGAGAAGAGAAACACA C,G [19225,19239] 19279 29 100.0 32 ............................. GTAGTTCCTCAGCTATCATCCACCACGACTTA 19340 29 100.0 32 ............................. ATAATAAGCTCGTAATTTGGTCTGAAATTATT 19401 29 100.0 32 ............................. ACCAGTGAATGCGCGACCAACGTTATCAGGTG 19462 29 96.6 32 ............................C AACTGGCGTGCTCGCTCGTGCATGGTGGGAAG C,G [19471,19485] 19525 29 96.6 32 ............................C AATGGACAAGTTGAAGGAGGCGGCTAAATTCA 19586 29 100.0 32 ............................. AATGACGAAAACACCGAAGGAACGGATCAAAG C,G [19595,19609] 19649 29 100.0 32 ............................. AACTATCACTTAGCGCCGTTTACGTACTATGC 19710 29 96.6 32 ............................C GTTAGCGTCCAACCTTTGCTGATATTGTCTTT 19771 29 100.0 32 ............................. ATATGGCAAGACAATCAAGCCTGACCTATCCA 19832 29 100.0 32 ............................. ATCAACTCGGTAATCGTAACCGTCAAATCCAA 19893 29 100.0 32 ............................. CATGTCATGCAGCCTGCTTACGTCGTAGCTTA 19954 29 96.6 32 ............................C TAGAGTCAATTGCTCAACTACAGCAACTAGAG G [19976] 20016 29 100.0 32 ............................. GCGGTAGTTTATCGTTTGCCGAACAGCAAAAG 20077 29 96.6 32 ............................C GAGATGGGTGCAGTCAAAGCTGGGTCGCTTAA G [20099] 20139 29 96.6 32 ............................A GACTGTTCTTGTCTACAACCGAATTAATAACT G [20161] 20201 29 100.0 32 ............................. AGCTGATAAGGATTTCGCAACTGATGATCTAA 20262 29 100.0 32 ............................. ATCCACTGGCTAAAGCTAGTGTGGCGGTATCA 20323 29 96.6 32 ............................C AATCACAATTGCTGGCAAACGCCATTTTCTAG G [20345] 20385 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================ ================== 30 29 98.9 32 GTATTCCCCACGCATGTGGGGGTGATCCT # Left flank : GCAACTGATAAAATTATTTCTATTGGCGCAGTCAAAAAAATTAAAAATGGTGAAATTGATCAATTTTATAAACTTATTCAGGTTAACGATAACATTCAAACGAAAATAACGAACTTAACTGGGATTTCTTCTGACTTGCTAAGGACAAGGGGAATTGATTTGGATTCAGCATTGCAACAATTAAAAAAGTTTATTGGCCAATCAGTCGTTGTGGGGTATAATTTGCGATTTGATCAAGAATTTCTGTCCTATGGTTTCAAGAAAATTGGTCAACCAGATCTATCCAATCAAATGGTAGATCTAATGCCAGTTATAAAAAAAACAAATAAATTTCTTGATAATTATCGTTTAAGTACGGTACTTAAAGAATACTCAGTCAGAAATTCAAAACCACATCATGCATTATCTGATGCTCAAGCAACCCTTGAATTGGAGACCAAACTCATAGAAAATGGACATTTACTAATTTAAAAATGCTGTTATGGCGGGAATCGTTTAGT # Right flank : TGGCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCATGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6460-8474 **** Predicted by CRISPRDetect 2.4 *** >NZ_AWTT01000034.1 Paucilactobacillus wasatchensis strain WDC04 contig00034, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 6460 36 100.0 30 .................................... CACTTAAAACTTTATCAAACGTGGTTTTGT 6526 36 100.0 30 .................................... TATCCCACACAATGACATTCTTCACTTCAA 6592 36 100.0 30 .................................... AACTCGATACCGTTATTTACTGTTGCCATA 6658 36 100.0 30 .................................... TCGATACAGTTATTAACTGTTGCCATAATT 6724 36 100.0 30 .................................... GTGGCTGACCAGCTTAACCTGCAAGCACAA 6790 36 100.0 30 .................................... ACGGCTGCTTCAGCTAATGGTGTCAATGCG 6856 36 100.0 30 .................................... ACGGCTGCTTCAGCTAATGGTGTCAATGCG 6922 36 100.0 30 .................................... TCTGATAAAATGTCTAGCAATTATTCATCA 6988 36 100.0 30 .................................... CTTGAAAACATTATACTGGTTGCTATCGGT 7054 36 100.0 30 .................................... ACTAATCCCCAAGAAATCGTAGACATGTTA 7120 36 100.0 29 .................................... AATGTTCAATTAAATCTTGCCCATCTTTT 7185 36 100.0 30 .................................... ATATGGTCTTTCCAACTGTTCGGCTATTTC 7251 36 100.0 30 .................................... CCGTTACTACCTGAGCCAATACAAGGTACT 7317 36 100.0 30 .................................... CAAGAATCAAAGGAGAAGACAAACATGAAG 7383 36 100.0 30 .................................... TCAAACATTTTCTAACACTTTTTCTAACAT 7449 36 100.0 30 .................................... TTGCAAGTGATTCGGTTAGGCTTATCCGGT 7515 36 100.0 30 .................................... AAGTTCAATTTCCGTGCGTTGTTCCGTGCC 7581 36 100.0 30 .................................... CGCCTCCTATGCGTATAGATTTTGGAAACC 7647 36 100.0 30 .................................... AAGTCCAAAGCCGAGGCCGACATCATGGAA 7713 36 100.0 31 .................................... ATGATTTTAAAATTGAGCCGTTAAAATCACA 7780 36 100.0 29 .................................... AGGCGAAACTAGATACAAAAAATAGGGTC 7845 36 100.0 30 .................................... GCGATTTATAATTTAGGTAAAGGTTCCGCC 7911 36 100.0 30 .................................... CTATCGCCAACTTCATTATAGTTGCGATCT 7977 36 100.0 30 .................................... ACCGGTATAACACAGTATATAGTATATATA 8043 36 100.0 30 .................................... AGGTAGTGTCGGCTACCATCAAGCTTTTCA 8109 36 97.2 30 ...................................C TTTTTTCGTGTGTCATTGGCGCTTGTCCTT 8175 36 97.2 30 ...................................C TTGTTTTGCTGTATAGATTGTTTTCAATGC 8241 36 97.2 30 ...................................C GATATTTTTAGACAATCTGATCTAATGCAA 8307 36 97.2 30 ...................................C GACTAATGTAGACATGAGTCGTAGCGTCTA 8373 36 97.2 30 ...................................C TGTGCATTAGTCATACTGGTTTTGATACCG 8439 36 91.7 0 ........................A.......A.A. | ========== ====== ====== ====== ==================================== =============================== ================== 31 36 99.3 30 GTTTTAGAAGGTCAGTAAATCAATGAGTTTTGGTCT # Left flank : AAGTTGATTTAGACAAGTCATTTCAAACTCATCTGTATAAAAAGTTAAAAGAAAATATGACAGAATCTCAAACTAAACAAATTTTTGATTTAGCACAACAATTAAAAACCAGTATTTTAGAAGCAACTTATATTTTAGATTTACCATTGCAGGTAGAAGAACAAACTGAAATGAGCAAGATATTTAAGTTCAGTGATTTACATTTCAGCTCTACTTTGGTATCAAATTCGTATGGTATAATAGAGGCAATTCTAAAAACTGCAAATGAGTTAAATGATGATAAAATTTTGGGCTTTATGAACGTTTCGGACTATTTAACCGATGATGAGTTAGTCGAGTTAAATGAATTAGTCCGATCATTGAAATTAAAGGTCCTTCTCATTAAATTTTCAGAAATTGAGAGACGCGAGAAGTTTAATGGATGCCGTTATTACTACATTGATAGCGATTATGTTGAGTGGAAGTAATTTTACTTATGAGAGTAGTATTAGTAAATAACG # Right flank : TAATATATACTCAAAGAGTAACAGCAAAAATTGATACAGCAAAATGTCTAACAGAGGCAAGGCATGGATTATGAGCATATTCAAGCGTAAAGAAAAAGAAATTTATATTGATCTTACACCAGGTCTTACTGGAACTTTTGAACCAAAAACATCCCCAAAAAAGGTGGAGCAACCAGAACCTGTAGCAAAGCAGGAACCTAAGATGTACAGATTCCATGAATATTCTAGTAATCAAGATTATGCGTATGAAGTTGGTAATGTTGACTATTATAATGATATTTACGGTGGCTATGGTCAGCCAATCCATTTTATTTTAAAGCCAATGGGCGAGGATACTCGGCATGGAACCTTGAGCTTTAAGATTGTCGGTCAATACGCTGATGATGCAAATAATGCTGGTAAAGTTACTTCTAGAATGGAATCTATTACTGATTATGATGAAGCTTCCAATACTCGTTACATTAACTATGCTTTTCAGGCAATTATGGACGAATTAGAAG # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGGTCAGTAAATCAATGAGTTTTGGTCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.80,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 26-1286 **** Predicted by CRISPRDetect 2.4 *** >NZ_AWTT01000079.1 Paucilactobacillus wasatchensis strain WDC04 contig00079, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 26 29 79.3 34 ......................GTGAT.C CAACAAGACAATTATTGACATCATCCCCGAAACA 89 29 96.6 32 ............................C GATTGAAGCCGCTTCTTCAGCGATGAAAACAA 150 29 100.0 32 ............................. ATCGTTGGTGCTGGGAAAGGTAAAGACAGTGT 211 29 100.0 32 ............................. GACATTACATTGGTTCCAGAAGATAACGAAAA G [233] 273 29 100.0 32 ............................. GAGACGGTTACCAGCAGGCAAAATGTCGATGA G [295] 335 29 100.0 32 ............................. AAAGACTATTTCTACTTCGACAGCGATGTCAT 396 29 100.0 32 ............................. GAAAGAAATCATCTACGGCGACATTGATGTTC C,G [405,419] 459 29 100.0 32 ............................. GAAATACGTATATATGGATCGCGAAACGTTTT G [481] 521 29 96.6 32 ............................C AAAGTTTTTATCCACAATGTCCAAAAAGAAGA G [543] 583 29 96.6 32 ............................C AAAGAGTATGACGTCAACGGTACCGAAGCATA G [605] 645 29 100.0 32 ............................. AATTGCGTGCATATGTTTCTCTTCTCTCGATA 706 29 100.0 32 ............................. ATAATCGTGCCAGTAGCTAGTATCGGTTCTTG 767 29 100.0 32 ............................. TAATATATTCCCAATACATACAACTATCGATA 828 29 100.0 32 ............................. GTGGTAGTAATGTATGAGAACCCTTTTTGGCT G [850] 890 29 100.0 32 ............................. AAGGCACATTCGGCTTAATATCTAAATCATGT G [912] 952 29 96.6 32 ............................C ATCATTCAAGTTGGCTGTATCTACAACAGCAG G [974] 1014 29 100.0 32 ............................. GATTATGGAATTAAAGAAGATTAGTCAAACAG 1075 29 96.6 32 ............................C TATCTATTACAACATCATACTATAAATGGTAA 1136 29 96.6 32 ...........A................. GCCTTGGCGTACCTTGATCGGCTTAATAAGGA 1197 29 100.0 32 ............................. ATAATAATTGGGACACAGGTATTACTCAGGAA 1258 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================== ================== 21 29 98.0 32 GTATTCCCCACGCATGTGGGGGTGATCCT # Left flank : CATTGTGGCGCACAGCAACGTAGTGG # Right flank : TATATAAAGTCGTACGGGGATGTTATACCCCCTGTATTTAAAGTGCTCCATAATTGTTAGACAAGAAATCTAACAGTTATGGAGCACTTTTTCTATGGTCAAATATAGTTCAGAATTAAAAGCAGAAGTCGTTAGTGAATATCTTCAAGGTGACATTAGTATCAGTCTTCTTTCAAAGAAACGTAACTTGCCTCGAATACAAGTAGGTAGATGGATACAAAACTTTCGTTTGAGCGGCGCAGATGCTCTTAAACGAAGAAGAGTTAAACGAAGTTTCTCAGTTGAGTTTAAAGTTGATGTGATAAACTACTATCAAACTCATGATGAAACTTTAGCCGAAGTATCCGCAAAATTTGATGTTAATTCTTGTCAAATCAGTCTTTGGAGGACAGCCTTCAATCAGTATGGTATAGAAGCCTTGAAGCCTCATCCGAAAGGCAGAAAAACCAAAGTGAAACATGATAAGAAGAAATTACGTAAGTTAGTAAACAAGAACGAAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCATGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,1.05 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 42-808 **** Predicted by CRISPRDetect 2.4 *** >NZ_AWTT01000098.1 Paucilactobacillus wasatchensis strain WDC04 contig00098, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 42 29 100.0 33 ............................. GAATACGATTCAGACGGAACACAATCCAGTGAA 104 29 100.0 32 ............................. ACAAGAGTACGTTCAATCGAATCAGGCATGTT 165 29 100.0 32 ............................. ATCAACACGGTAATCATATCCACAAGATCCAA G [187] 227 29 100.0 32 ............................. GCAATCTGTAGGTTACAAAGAGAGCCAAGCAG 288 29 96.6 32 ............................C GGGAACCAGTGAAGATGAATTATCAGGAAAGT 349 29 96.6 33 ............................C GCATACACCGCATGGTTGATTGAATGTTGAAAA 411 29 100.0 32 ............................. GTCACGCTCATCAGCCATGATAGTTTGCACTG 472 29 100.0 32 ............................. AACCGTTAGGGTCATCAATCTCGCCACGCATG 533 29 100.0 32 ............................. CGTATCAATAGGCTGAATTTTAATCGTACAAT G [555] 595 29 100.0 32 ............................. ATTAGGTGTAATCCGTTCACTTGCATCAATCG 656 29 100.0 32 ............................. TACATGACGTCTTCTGGTGCAGGTGACCAAGG 717 29 96.6 32 ............................C TACCGTTTTTAACACAATGAAGAATGGAATAG G [739] 779 29 100.0 0 ............................. | G [801] ========== ====== ====== ====== ============================= ================================= ================== 13 29 99.2 32 GTATTCCCCACGCATGTGGGGGTGATCCT # Left flank : GGTGATCCTATACCACAATCACAGATTTCCTGCAAGCATATG # Right flank : ATGAGTGAAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCATGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //