Array 1 19555-18265 **** Predicted by CRISPRDetect 2.4 *** >NZ_FZUG01000032.1 Neisseria meningitidis strain Neisseria meningitidis isolate B200, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 19554 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 19488 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 19422 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 19356 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 19290 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 19224 36 100.0 30 .................................... CGTAACCGGCAAGGCTTATTTGTCCAACGA 19158 36 100.0 30 .................................... ATAAATCAATACCGTGAAAACCTCATGTGT 19092 36 100.0 30 .................................... AAAAACTTTTTAGGGGGGTCGGAAAAATAC 19026 36 100.0 30 .................................... GAGCATCTATTAGGGGTGAAGGTAGATCTT 18960 36 100.0 30 .................................... AGACTTAGCACGTTTAACTTGCTTAACAAG 18894 36 100.0 30 .................................... CAAAAACTTTTTAGGGGGGTCGAAAAATAC 18828 36 100.0 30 .................................... CAAAGCTATAAACACGTTTATCTGTTGTTA 18762 36 100.0 30 .................................... ATGGGGTATGCAATTACATCGCTTGGGTTT 18696 36 100.0 30 .................................... AAATTATACCAATGGCGAAAATCTCGGGCG 18630 36 100.0 30 .................................... GCTCAGTTGGAACAATGAATACATCTTGAA 18564 36 100.0 30 .................................... ATAGGTTCTATTAATACGTCTTTCGTCTTC 18498 36 100.0 30 .................................... TTTTCCAGCGCGATGAGATACCCGGCATAG 18432 36 100.0 30 .................................... CAAAGCTGCGGTATGTCGGGATTGTCTTCA 18366 36 100.0 30 .................................... TCCACTATATAAATCCAGCACAAAACGGGA 18300 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //