Array 1 6213-6045 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV794544.1 Streptococcus sp. HMSC077D04 Scaffold688, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6212 36 83.3 30 NNNNNN.............................. AAAGCTAATAACTCAAAACTCGAAAAAGAA 6146 36 100.0 30 .................................... ACATTGGGAGTTTTAAACAAAAACTAACCG 6080 36 94.4 0 .................................CC. | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 92.6 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : CGAATGGTTCCAAAACTAAACTGAAATTGCAGGTTAAAATCCCACAGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACAATTTCTCAGCAGAAAGCAACGTCACAGCAGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACATGGCCAGTACAAGACCACGAAGCCAGATAGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACCTTGTCATGTGGATATAATACAAACCATCATGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACATCGTTTCCGACTTTAGAAACTGCATTGTTGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACGCTAGATACCCTCGTCCATAATCAGTAGTTGTTTTAGAGCTGTGTTGTTTCGAATGGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : ATATTAAAAGCTACTCATTTTTTAAGTAGCTTTTTTCTTATTCAAGTTTACATATTAGTCGTCACAACCCCATTCCCTTGTAGAAAAGCAAAACTGCGAGTCCTACGAATAACACTACCGCTCCTAACCTCTGGCTGGTACCATACATCCTTCTTTCTCCTCGAACTGGAAAGATAACTGCTAGAAATGCTCCGCCGACTGCACCACCGATATGGCCTGCTAGGCTGATTCCTGGAATCAGAACACTTCCAATAATGTTAACCACAAAAAGTGTCAGATAAGATTGGCCTAGCTGCTGGATATAGGGGTTCCGAGTAGCATAGCGAAGAACAATAATCGCGGCAAATAGCCCATAAAGAGAGGTAGAGGCTCCTGCTGCTAAGGATTTGGGACTAAATACAAAAACAAAGAGATTGCCCATCATTCCAGATAATAGATAGAGAAAGAAAAACTGCTTGGATCCGAAAATTTCCTCTACTTGCCTACCAAGATAATAGAGC # Questionable array : NO Score: 4.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.63, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 6667-6366 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV794544.1 Streptococcus sp. HMSC077D04 Scaffold688, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 6666 36 100.0 30 .................................... AATTTCTCAGCAGAAAGCAACGTCACAGCA 6600 36 100.0 30 .................................... ATGGCCAGTACAAGACCACGAAGCCAGATA 6534 36 100.0 31 .................................... CTTGTCATGTGGATATAATACAAACCATCAT 6467 36 100.0 30 .................................... ATCGTTTCCGACTTTAGAAACTGCATTGTT 6401 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 5 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : CTGTGTTGTTTCGAATGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCTGTGTTGTTTCGAATGGTTCCAAAACAACCGTCTTTTTTAACATAATCATCTATGTGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACTTCTTAAGTTTTTATTGATTATTTAACTGTGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACAACAAAATTACGCATGGAGTGGCTACACAAGTTTTAGAGCTGTGTTGTTTCGAATGGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGCTGTGTTGTTTCGAATGGTTCCAAAACTAAACTGAAATTGCAGGTTAAAATCCCACA # Right flank : GCTAGATACCCTCGTCCATAATCAGTAGTTGTTTTAGAGCTGTGTTGTTTCGAATGGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGCTGTGTTGTTTCGAATGGTTCCAAAACAAAGCTAATAACTCAAAACTCGAAAAAGAAGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACACATTGGGAGTTTTAAACAAAAACTAACCGGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAACCCATATTAAAAGCTACTCATTTTTTAAGTAGCTTTTTTCTTATTCAAGTTTACATATTAGTCGTCACAACCCCATTCCCTTGTAGAAAAGCAAAACTGCGAGTCCTACGAATAACACTACCGCTCCTAACCTCTGGCTGGTACCATACATCCTTCTTTCTCCTCGAACTGGAAAGATAACT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 3 7374-6821 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV794544.1 Streptococcus sp. HMSC077D04 Scaffold688, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================================================================== ================== 7373 36 83.3 30 NNNNNN.............................. TTTTGTTCAATTATTGTATCATGATTTGCG 7307 36 100.0 30 .................................... TATATTGATGCTGAAATAGTTAAAGTCAAT 7241 36 100.0 30 .................................... GACTGTAGAGGTAGATAACTACTCTGTCAT 7175 36 77.8 85 ............................NNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 7054 36 80.6 30 NNNNNNN............................. AACCGTCTTTTTTAACATAATCATCTATGT 6988 36 100.0 30 .................................... TTCTTAAGTTTTTATTGATTATTTAACTGT 6922 36 100.0 30 .................................... AACAAAATTACGCATGGAGTGGCTACACAA 6856 36 83.3 0 ..............................NNNNNN | ========== ====== ====== ====== ==================================== ===================================================================================== ================== 8 36 90.6 38 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : CTTATTTGTCGAACCTCGAAAAGTCTATGATTTTCCTCAATATGTGCTGGATCAAGACTATTTCTTGAACCCTGAAAATATGGTATAATAAGGGTAACAATTGGAGCCTGACGAGCTGAAGTCTGGCTGAGACGAATGGCGCGATTACGAAATTTCGTGAGAAAAATTTTTCTACGAGGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACGATCATTCAGGAATGTGTCCATCATGATTAGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACGGTTATCAATCATGTTATATAATATTATGTGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACCTCTCTGTCACGCTCTCAATAGATTTGTCAGTTTTAGAGCTGTGTTGTTTCGAATGGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGCTGTGTTGTTTCGAATGGTTCCAAAACTAAACTGAAATTGCAGGTTAAAATCCCACAGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACAATTTCTCAGCAGAAAGCAACGTCACAGCAGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACATGGCCAGTACAAGACCACGAAGCCAGATAGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACCTTGTCATGTGGATATAATACAAACCATCATGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACATCGTTTCCGACTTTAGAAACTGCATTGTTGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACGCTAGATACCCTCGTCCATAATCAGTAGTTGTTTTAGAGCTGTGT # Questionable array : NO Score: 5.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.53, 5:0, 6:0.25, 7:-0.61, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.17%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 4 7696-7528 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV794544.1 Streptococcus sp. HMSC077D04 Scaffold688, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 7695 36 100.0 30 .................................... GATCATTCAGGAATGTGTCCATCATGATTA 7629 36 100.0 30 .................................... GGTTATCAATCATGTTATATAATATTATGT 7563 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : ATCAGCTTAATGACAAGCCAGAAGTCAAATCCATGATTGAAAAACTGGTAGCTACGATTACAGAATTGTTAGCATTTGAGTGCTTAGAAAATGAACTAGACCTAGAGTACGATGAAATCACCATTCTAGAGTTGATCGATGCTCTAGGGGTCAAAGTTGAAACTCTGAGTGATACACCTTTCGAAAAGATGCTAGAAATTGTCCAGGTTTTTAAATATCTTTCCAAAAAGAAACTCCTTGTCTTCATCAATGCGTCCGCCTATCTATCAAAGGATGAGTTAGTAAATCTGATAGAGTATATCCAACTCAATCAACTAAGGGTCTTATTTGTCGAACCTCGAAAAGTCTATGATTTTCCTCAATATGTGCTGGATCAAGACTATTTCTTGAACCCTGAAAATATGGTATAATAAGGGTAACAATTGGAGCCTGACGAGCTGAAGTCTGGCTGAGACGAATGGCGCGATTACGAAATTTCGTGAGAAAAATTTTTCTACGAG # Right flank : CTCTCTGTCACGCTCTCAATAGATTTGTCAGTTTTAGAGCTGTGTTGTTTCGAATGGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGCTGTGTTGTTTCGAATGGTTCCAAAACTTTTGTTCAATTATTGTATCATGATTTGCGGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACTATATTGATGCTGAAATAGTTAAAGTCAATGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACGACTGTAGAGGTAGATAACTACTCTGTCATGTTTTAGAGCTGTGTTGTTTCGAATGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCTGTGTTGTTTCGAATGG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //