Array 1 395-37 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHJJ01000233.1 Clostridioides difficile CD37 scaffold_233, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 394 28 96.6 37 -............................ GATAATTGCTATTTTACTAAAGGTACGGTCGTGATTT 329 29 100.0 38 ............................. TCGCTAGGTTTTATATCTGCTTTATTAGTATTTTTAAT 262 29 100.0 36 ............................. GTCTTTTATAACTAGGTCTATTGAGCTATTATTTGA 197 29 100.0 37 ............................. TTTCTAACATCCTGTACAGTCGTTTCTTGCCATGCGG 131 29 100.0 37 ............................. TTAAAATACTTTTTTTAACTCCGTCAACTTCAACAAC 65 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 6 29 99.4 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : | # Right flank : TTAGCAGTATTTAGTGTGTGGGCTAGTCGTGTTTTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [31.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 1-224 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHJJ01000128.1 Clostridioides difficile CD37 scaffold_128, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1 28 86.2 37 -.....G.........A...A........ TTCGCAACTTATGATGGTGAAATGATTACATTAACAG 66 29 93.1 36 G...........................G ATTACTCTAAAAGTCTTTTTATCATTTTCTACCTCA 131 29 100.0 38 ............................. AAAGCAAAAGATAGGAATGATAATTTTAAAACTCCAGA 198 27 79.3 0 C............A......-.-.A...A | ========== ====== ====== ====== ============================= ====================================== ================== 4 29 89.7 37 ATTTTATATTAACTATGTGGTATGTAAAT # Left flank : | # Right flank : CTAAATAGAAGAAAGAAGCACTTACTTAAATGGTAGGTGCTTTTGTTTTGCTCAAAATTGGTCGGTTGAGTAAAATAATTAGAAAAAAAGATATAGCTGAGGTAGTGTTTTACGACGCTAGCTTCAATAAAATTTTATTTGAAAAATATTCCAAAATAGCTTGACTGTAACTCGTTACAATGTTATTATTAATGTAACGAGTTACAGAAAAGAGGTGAATAAAATAGCAACTAAAAGTAGAGCAGAGTATATGAAAAATCGTCGAAAAGATAAAAGAGGTTTTAGTGTACTTTTAGACAAAGAAAAGTTAGATAAATTTGATGAAGTGTTAGAAGAGAAGAATCTAACTAAGAAAGAATGGCTAGAAGAAAAAATCGAC # Questionable array : NO Score: 5.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.49, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:81.48%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [3-3] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 32-254 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHJJ01000229.1 Clostridioides difficile CD37 scaffold_229, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ======================================= ================== 32 27 100.0 38 ........................... ATTTTCAATCATTGCTATAGAGCTGTTAACAATATGTG 97 27 100.0 38 ........................... ATCTGAGAAAGTTTTATTCTTTTTTAATGTTACAAATC 162 27 100.0 39 ........................... ATTTATCATTTTTTCCGCTTCTGCTTGTAATTTAGACTC 228 27 100.0 0 ........................... | ========== ====== ====== ====== =========================== ======================================= ================== 4 27 100.0 39 GTTTTATATTAACTATATGGAATGTAA # Left flank : TTCACTATGAGTTGCTAATAAATCCTCAAACG # Right flank : | # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:81.48%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [35.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 4483-4706 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHJJ01000228.1 Clostridioides difficile CD37 scaffold_228, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ======================================= ================== 4483 27 100.0 39 ........................... ATCTCCCAGGAGTACCGCTATAAAAATAAATCATACAAT 4549 27 100.0 39 ........................... ATAAATAAAAATAAATCAAAAAACTCACCTCAAACTTTA 4615 27 100.0 38 ........................... ATTAAGCCTCTCACAACATCTTTCCCGATACTCATAAT 4680 27 100.0 0 ........................... | ========== ====== ====== ====== =========================== ======================================= ================== 4 27 100.0 39 GTTTTATATTAACTATATGGAATGTAA # Left flank : GATAACCATAATAAAAATAGATATCTATTTTTAGATTAAAAATAATATATCATAAATAAAATAATAAGAGGTAGATACAGTTTTAAGGGAATACAAAAGTTTTTAATTAAACTATGCTTGTTCAGATAGATATTTATTTAAGAAAAAAGACCATTAAAAGCAATATACAAAAATGATATATTAGATTGATTAAACAAGCATAAATATTATGTAAAAAACTTTAAGTTATAGAATTTAAATCTAATGTAGATAGATTACGTTTTTTTGCTTTTATTATGGTATAAATTGGTATCAATATTCAAAAGTAATATATTTATGATATAATAAAATTATAGAAATTTTGCAGTGAGCGATATTTGTGAAAAAATTTGGCGTAACAGTTGAAATATAAGGCGTTGAGAGTGCATGATAAGCGTTATCAATTGCACTATTGCTCGTTCACTGCAAATTTAAGAGAGTTGTATACGTGTAAGTGTTGAAAATACTAAGTTTATTTTGGT # Right flank : | # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:81.48%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 458-35 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHJJ01000242.1 Clostridioides difficile CD37 scaffold_242, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 457 27 93.1 36 --........................... TTAGAAATTTTACTTGAAAATATTATACTAAAGGAT 394 29 100.0 36 ............................. TCATCCAGCAATTTTTTTATTATAGCTTTCATGGGT 329 29 100.0 38 ............................. AGTAATATAAACGTTTTTGCTGATAAAACAACTTATAA 262 29 100.0 37 ............................. AAACTAATCACCACCCCGATTACTCAATTTATAAGTA 196 29 100.0 38 ............................. ATTTTTCTACAGTCTTCGTCAATTTTGAAAGCACCATA 129 29 100.0 37 ............................. CATGGACTTCTTTGAAGATTTTACAAGGTCAACAATA 63 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 7 29 99.0 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : | # Right flank : TGAGGAAATGTTTAATATGATGAAAAATGGGGCGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : TGTTTTATATTAACTAAGTGGTATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [35.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 396-36 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHJJ01000243.1 Clostridioides difficile CD37 scaffold_243, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 395 29 100.0 37 ............................. GTGCAAATAATAGTGCCAAGTTTGGTGGTATAACATT 329 29 100.0 38 ............................. CTTTCTAGTATTATTTGAGCTAAAGAAATTGAAGCTGG 262 29 100.0 36 ............................. GTTATCTTCGCCAATTGGGTTAGTTGAACAAATTAC 197 29 100.0 39 ............................. AAAATTTTAGCTACTTCAATTTTATTCATGCTTTTAATA 129 29 100.0 36 ............................. TGATTTACTGTTAGACCACTCCTGCTTATCTCTAGA 64 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 6 29 100.0 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : TACTCATGGTTCACTGCAAATTTAAGAGAGTTGCACATGTGTAAGCATTGAAAATGCCCATTTATTTTGG # Right flank : TTATTTTTTCAACTCATAATTTGCACACTTAACCTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 56731-56439 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHJJ01000241.1 Clostridioides difficile CD37 scaffold_241, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 56730 27 89.7 38 --.............A............. CTCAGTATGTATTTATAGTGCTTTTGTCAGTTGTAAGG 56665 29 96.6 37 ...............A............. ACTCGACTGAACATAGAAACAGCTTTTACAACTCCAA 56599 29 96.6 37 .................A........... CTTATACTTAGTTAGAACTATATATCGACACAAATAT 56533 29 89.7 37 .C..............A......A..... TGCAATTTTTATTCGTTGTCCAATCTCTTTGAAATTT 56467 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 5 29 94.5 38 GTTTTATATTAACTATGTGGTATGTAAAT # Left flank : | # Right flank : TTGCAACAAGTATAGGTAAAATACCCCAATAATTTATACAGCATTTTCTCCTTTAAAATATAATTATTTTTTATCATTTGTAGTAAATAATTACCACATAATATTGACTTTAGTTTTAATGATTAAAATATAAAAGTAGAATAATTATAAAAAGTATTGAAAAATTTATAAATATATATAATAAAACTTAATGACAAGATATTAGATATAAAAAATAATTACCTTATAAATAGATTGAAATTTATGAATATTCATACTATAATTTAAATATAAGGAGATGCCCTTTGAAAATAAAAATTAAAAAATATTTAATGCTATTACAATAGGAACTAGAACTACACTTAATAAATATACAGAAATTAGATTTGGCTCAATATAAAATACAAATATAGAATTTAGGTGTTTTTTATGAAAAAATTTTTATATGCTTTATATAGTTTCATTGTTATTATAGCTAATTTTAGATTAAAAGAAAAAAATTATAACTTTATTTTATTAGC # Questionable array : NO Score: 3.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:81.48%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 35-455 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHJJ01000200.1 Clostridioides difficile CD37 scaffold_200, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 35 29 96.6 1 ............................A G Deletion [65] 65 29 100.0 38 ............................. TTTCCAGACCAATTAACAATAAATATACTTGATGAAAA 132 29 100.0 36 ............................. TGAATCTGGTCTAAATTCTTTTGGTTTCATGACTGG 197 29 100.0 39 ............................. ATTTAATCAGATTGATGTTTTTTGGTTTAATCGTTTTTA 265 29 100.0 37 ............................. TTATTAGTTCTTTAAATACTACAGCAGGTAAAGCGGT 331 29 96.6 1 ............................A G Deletion [361] 361 29 100.0 39 ............................. CATCTGATAATCCTATGGAGGGTGGTTATTATCAAGCTA 429 27 93.1 0 ...........................-- | ========== ====== ====== ====== ============================= ======================================= ================== 8 29 98.3 27 ATTTACATTCCATATAGTTAATCTAAAAC # Left flank : AATATTCCAGACGAAACGACAGCTACTGAAAGCGA # Right flank : | # Questionable array : NO Score: 5.27 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.89, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTCCATATAGTTAATCTAAAAC # Alternate repeat : ATTTACATTCCATATAGTTAATCTAAAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [31.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 37-585 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHJJ01000199.1 Clostridioides difficile CD37 scaffold_199, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 37 29 96.6 0 ............................G - Deletion [66] 66 29 100.0 39 ............................. ATTTAATCAGATTGATGTTTTTTGGTTTAATCGTTTTTA 134 29 100.0 37 ............................. GGATATAGGGGGAGAATAGCCATTTCCTAATTCCCTA 200 29 100.0 36 ............................. TAAAAACGTACTTATATTATAATGTCGTGTATAAGG 265 29 100.0 36 ............................. AATTACAACCGTACCTTTCGTAAAATAGCAATTATC 330 29 96.6 1 ............................A G Deletion [360] 360 29 100.0 38 ............................. GCAATTAATATCTCTAATGCTGTAACAAATGTTCAAAT 427 29 100.0 37 ............................. ATTATAAGATAGTTGAAGTTTTAAATGATGAAAAAAA 493 29 100.0 37 ............................. GTTTTACTTCTGTATTAGCTAATACTATCATGTCATC 559 27 93.1 0 ...........................-- | ========== ====== ====== ====== ============================= ======================================= ================== 10 29 98.6 29 ATTTACATTCCATATAGTTAATCTAAAAC # Left flank : TTTATTTGGAAAAGGTGGAAGTGGTAATGTTTGCGCA # Right flank : | # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.67, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTCCATATAGTTAATCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 1021-12 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHJJ01000198.1 Clostridioides difficile CD37 scaffold_198, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 1020 27 93.1 37 --........................... AATTTTTCGAGAGTCTCAATTTACAGAAGAAATTGGA 956 29 100.0 36 ............................. TGAGTTAATAGAAAATTTAAATACTAATGAAAAAGT 891 29 100.0 1 ............................. C Deletion [862] 861 29 96.6 37 T............................ ACCGCTTTACCTGCTGTAGTATTTAAAGAACTAATAA 795 29 100.0 38 ............................. AGCCTTGTCTCAATATGAAAGAGATTTAAGAATGCCAG 728 29 100.0 36 ............................. TTTTAAGCGTGTTGCAATATGATTGCCTTATGTTTG 663 29 100.0 39 ............................. TAAAAACGATTAAACCAAAAAACATCAATCTGATTAAAT 595 29 100.0 36 ............................. ATAACATATGAAGGTATGGAACAGACAAGTAAACAA 530 29 100.0 36 ............................. CCTTATACACGACATTATAATATAAGTACGTTTTTA 465 29 100.0 1 ............................. C Deletion [436] 435 29 96.6 37 T............................ ACCGCTTTACCTGCTGTAGTATTTAAAGAACTAATAA 369 29 100.0 38 ............................. TTTTCATCAAGTATATTTATTGTTAATTGGTCTGGAAA 302 29 100.0 38 ............................. ATTTGAACATTTGTTACAGCATTAGAGATATTAATTGC 235 29 100.0 36 ............................. CTTGATGATTGGCGAGAATACTATATTTGTTGGTCA 170 29 100.0 36 ............................. CCAGTCATGAAACCAAAAGAATTTAGACCAGATTCA 105 29 100.0 36 ............................. TGCTGTGATTTCACTAATAAAACAATTAATAATTGT 40 29 86.2 0 ................G....T.CA.... | ========== ====== ====== ====== ============================= ======================================= ================== 17 29 98.4 32 GTTTTAGATTAACTATATGGAATGTAAAT # Left flank : | # Right flank : TTAAATAAACAA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:-0.35, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [16.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 679-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHJJ01000197.1 Clostridioides difficile CD37 scaffold_197, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 678 27 96.4 38 -........................... TTGCATTCTCCCAACCATTCTAGATATTCTCCATAGCG 613 28 100.0 2 ............................ CT Deletion [584] 583 28 100.0 38 ............................ ACCGCTTTACCTGCTGTAGTATTTAAAGAACTAATAAG 517 28 100.0 37 ............................ CCTTATACACGACATTATAATATAAGTACGTTTTTAG 452 28 100.0 37 ............................ AATATTATTGCTTTTATATTTTTTAAATTTATACTTG 387 28 100.0 39 ............................ ATTTGAACATTTGTTACAGCATTAGAGATATTAATTGCG 320 28 100.0 39 ............................ ATTTGAACATTTGTTACAGCATTAGAGATATTAATTGCG 253 28 100.0 37 ............................ CTTGATGATTGGCGAGAATACTATATTTGTTGGTCAG 188 28 100.0 39 ............................ ATTTGAACATTTGTTACAGCATTAGAGATATTAATTGCG 121 28 100.0 1 ............................ C Deletion [93] 92 28 96.4 39 ....T....................... TCGGTTTATTCGTATTATATTTCTATAATCTTATTTCAG 25 25 89.3 0 .........................--- | ========== ====== ====== ====== ============================ ======================================= ================== 12 28 98.5 32 TTTTAGATTAACTATATGGAATGTAAAT # Left flank : | # Right flank : A # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.52, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTTAGATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-1.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 10727-10106 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHJJ01000189.1 Clostridioides difficile CD37 scaffold_189, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 10726 28 96.6 37 -............................ ATGAGAGATTTACAACTTAAAGGTTCTAATGAATTCC 10661 29 100.0 37 ............................. CCTGTAGCACCTTTTATTATATTTTGAACGCTACCCC 10595 29 100.0 37 ............................. AATTTTTGAAATGCACTGAATACTCATTTATTACATC 10529 29 100.0 35 ............................. ATTGGAACATTTAGAAGTATTGGTGCCAATGAAAA 10465 29 100.0 36 ............................. AATGAACTATCTAAACCAAGGTCATAATTTAATTGA 10400 29 100.0 36 ............................. TGAAAAACTAGTTAAAAACTGCATCAAAGTATTGAT 10335 29 100.0 38 ............................. ATTAAAAACATTTATTCTTTCATAGTTTGATTTTACTA 10268 29 96.6 38 ..................A.......... ACGCTTCCTACTTTTGAAGTTCATAAAGATGATTTAAA 10201 29 100.0 38 ............................. CCATCTTTTATTGCTTTACATAAATTTATATTACTTAT 10134 29 89.7 0 .................CA........G. | ========== ====== ====== ====== ============================= ====================================== ================== 10 29 98.3 37 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : | # Right flank : TTTTATAATTTTCTTTTAATGTGTTATCTTATGATTATCTAGTTATATTAGCATACAAAAATATAATAAAATTACACTATATTATAAAAACAAAAAGGTAGTATAGAAATCCTATTACCTTTTTATTATTAATTTTATCAGTGTTTTATTATAAATAGCTTACATAATTACACATTTTTTCTGATTAAATAATATGATGCTATTGTTATAATAGATACTAATGCTAATGATGTTATTGCAGTATCTAATCTTCTTATTAATAAACTCATTTCTATATATTCAAGTTCTATTAAATACTGATAAAATATTTCTAGTTTAACAGCTTTTTCTCTATCTATATTTCCATACTTTAACTCTAATTTATCTAAAGATTTTTTATTACAATAATTAACTTTATGTTTAATTAAATATCTTATTGTAGCACCTATTACAATTTTCACTCTAACAAGTATAAATATAATATTCCATCCAAAAGTTAAGAGGGGATATCTTTTTTATGA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 191-32 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHJJ01000190.1 Clostridioides difficile CD37 scaffold_190, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 190 29 100.0 36 ............................. GTAGGTGTCGGAGAGCTAGGAAACTATAGCATAATG 125 29 100.0 36 ............................. CTTTTAACTGAAAGAATAGTAATATCAACATACAAT 60 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ==================================== ================== 3 29 100.0 36 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : CCTTGAGATTGTAAAGTAACAAAGTGAAAATGTATAAAGAGGAAAAGAAATGGAAGGAAGAAAAGTATATAGATAAAGAGATATAACACATATTTTGATTTAACTGTATAAGATGAAAAATTTGATGATTTTGAATAATTTAAAAAATTGTTAATGAAAATAAAAGACTTATTGAGCTAAGGTGCGATTACATAGGAAGGATGCAATAAAAAGAAAAAGGAATCATTGGAATAGAGAATATAATAAATACTTATAAAAATGTAGATGCTTTTAGTTTGTAAAATTATCCCATTTTTATTTTATAGTATGAGTTTTATGATATAATAAAAATATATAAATTTTGCAGTGAGCGATATTTGTGATAAAGTAGGGTTTAATAGTTGAAATATAAAGCGTTGAGAGTGTATGATAACTGTTATCAATTGCACTATTGCTCGCTCACTGCAAGTTTAGGAGAATTGTATATGTATAAGTATTGGAAATACTTAATTTATTTTGGG # Right flank : TATACGTTACAGCAGTAAAAAGACTAACAGGA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //