Array 1 30469-31762 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBNO010000007.1 [Ruminococcus] lactaris strain MSK.17.86 CDCOBHPD_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================================== ================== 30469 29 100.0 35 ............................. AATTTATCCAATGGATATTTCTCCTCATATTCTCC 30533 29 100.0 47 ............................. TTGCGGTGCCTAGCCCCGCGTATAAAAGTCATCATTATCAGATTTTA 30609 29 100.0 42 ............................. AAACTCATATTCTTTCTCCTTCCAATTTTGAATGAAAAACAG 30680 29 100.0 43 ............................. TTTGCAAATTCACTATCCAATACAATTGCAAACTCTTTATCAA 30752 29 100.0 42 ............................. TTTCGGCAGCAGCAATCTCACTTGCCAGAGACTTTAAAAAGT 30823 29 100.0 49 ............................. TTGTTTGTCATTTCGTTTTGCATAATATGCCTCCTTATACTCTCCATAT 30901 29 100.0 41 ............................. CATCTGCAGGGAGAATGCATTACCAAGATAAATCATGGCAA 30971 29 100.0 51 ............................. ATATTATAAGTGGCCCATTCATCATCTTGAGCAGAGATGTTATCTCCATAA 31051 29 100.0 37 ............................. ACAGGTTATCGGATGTTCCAATCTGCATGTCTAATTC 31117 29 100.0 45 ............................. GATTGTCGGGAATCGTGAAAGTTAGTCCTTTTTCAATGAAGTGCG 31191 29 100.0 37 ............................. TCACCTAAGATTGTCATAATAGAATGTTTCATATTGT 31257 29 100.0 39 ............................. TATCCACACCATCCACAGCAAAGCCTTCATCAAGGATTT 31325 29 100.0 48 ............................. TAGCATACCCAAAACTTTTGGACTGTCCAATCAAGGTTGTCCAAGTAC 31402 29 100.0 34 ............................. ATTGTACACAAATCTGTCATTGAAGCGATCTGAT 31465 29 100.0 39 ............................. CAGTTTCTTCTTTGAGCTCTCTGACGGCACCATCGATTG 31533 29 100.0 45 ............................. ATGCTGTTTTCTCAGAAGTTGTTGCATCATCAGATACATCTTCTG 31607 29 100.0 32 ............................. ATTTCCCGATCATATATTTTTTTCATCATAAT Deletion [31668] 31668 29 96.6 37 .....................G....... TGAAAAATCAGCACACTTAGAAACATTCCAAGTTTCT 31734 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =================================================== ================== 19 29 99.8 41 GTCGGACATTACCTATGAGGAATTGACAC # Left flank : TATATTACAGCATGGTATGGAATTTACAGACTTTGCGGTGAAAGAAAGTATCTTGATTTCCTGTATCAGACAGGTCTGGGAAGTAAAAATTCGCAAGGCTTTGGAATGTTTGAAATTTTGTGAGATGAAGGGAAAAGGAAGGTGCCTGAAACGGAGGCACTTTTCTTTGTGAAAAATAGTAAGAAAACTGATAAATACGAAAAAGTCTTAAAAAAGTCCGTCGACCTTAACTCCTTGGAAATACTGGGAATTTCAGCGGTGGAAAATGGAAAAACATCTATTTTAAACCTCAAAACACCACTTTTTAGAGGAAATGTGAAAAAAAGTCCGTCGACCTCAGGAAGAAAAATCGAGATATATAAAAAGGCTTAAAAAGTGTTGAATTTATAAGGAAAATCAGGATATGAAAAAACTGGTGTCGACGGACTTTTCGGCTGAAAATTGATTGATTTTAGGGAAAAAATGAAGTATGATGATAGCAACAGCTGATAAATACGGCT # Right flank : CGTGTACGGTATTAGAACTTTCCAATTTGTTTTATCGTCGGACATTACCTTTCCTACAAGGATTCCTTGTGCCAATACATAAGGCAAAGACATTATTTTTATTTGAAATCAATGAATGCACCGACCTGTTGATTGTAACTACTAACTTTCAACTTTATGACATGGAGAAACGGATATGAGTTTGTGTATTGAGGAAATACTGTCAGACAGTAATCTTGCGGCAGCTAGGGCATCATTTAAGGGAAAAAATGACAGCAGTGGGATGGATGGTGTACGGGTATCTGAATTGGGCGAATACTGGAATGTCAATGGTGATAAGATTAAAAAGACGATTTTGGAAGGCAAATACAGTCCGGGGCTGATCCGGCAGCAGGAAATTGTGAACCAAAAGGGAAAGAGACGGACGATCTCGCTGATGAATACAGTTGATCGTTTTATTTTTCGTGCAGTTTATCAGCAGATGGCAAAGCTGTGGGAAGGAGAATTCTCAGAGCATTCTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGACATTACCTATGAGGAATTGACAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 6759-8835 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBNO010000057.1 [Ruminococcus] lactaris strain MSK.17.86 CDCOBHPD_57, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 6759 32 100.0 34 ................................ TAACTTTGGATCATTGATATCTTTATCCAATTGT 6825 32 100.0 33 ................................ ATTGATGATCTGTTGGTTGAGATTTACAAATTT 6890 32 100.0 35 ................................ TCCGATAGAACAGCAAATTGATAATCACCAAATGG 6957 32 100.0 35 ................................ CAAGGTATACTGTGCAATCATTTCCTTCCCCCTTT 7024 32 100.0 33 ................................ AGAAAGGGAACAAGGTGATTATCTGGCCGATCA 7089 32 100.0 34 ................................ TCGTCACCAGTGATGACTTTATAAATCGGGTCTA 7155 32 100.0 34 ................................ CTCAAGATTCCATTGATCAGGCACGGAGCAAGTT 7221 32 100.0 32 ................................ TGTTCCTGGATCCGTCAGCAAAAGGGCTTGCG 7285 32 100.0 34 ................................ AGTAACTGGCTCTCTAGCTCATCCATGTCATATC 7351 32 100.0 33 ................................ TTAAACTCTTCGGTAGAAATAGCACTGTCTTTT 7416 32 100.0 34 ................................ TGATTTGCAATCCATCAGACTTTTTGCTCCCGTC 7482 32 100.0 35 ................................ ATGGAAATGAATCAGCTTATCGACTGCCGTGTCAA 7549 32 100.0 34 ................................ ATCCCGTAAAGACGGCAAAGACAGCGGCAGGAGA 7615 32 100.0 35 ................................ CTATTTCATCAGTTACTGATCGTTCTGTAAATACT 7682 32 100.0 33 ................................ TTGCATTATAACTATAACATACTCAAAATATAA 7747 32 100.0 32 ................................ TCGTTCTGCCCGTCCGTGTCTCCAAGCTCCTG 7811 32 100.0 35 ................................ ACCTCATCGAGAGCATTTGCATAGATTGATATTCC 7878 32 100.0 34 ................................ TTCCCAAAGCTTCCGGCATATCCATCCTGTCCAC 7944 32 100.0 33 ................................ ATGAATCCATCCCCTGCCGGAACTACATTGACC 8009 32 100.0 35 ................................ AGGCAAAAGAGAAGAAAGTCTACCATCTGCATTTC 8076 32 100.0 34 ................................ TCCAAGCGTCTGACTACGCTCGGAAATGACCATC 8142 32 100.0 33 ................................ TGCATCATGACTTGCCCTTTCGGCTTCCGCCAC 8207 32 100.0 34 ................................ ACGATCGGAACGAGGGCTGTAACCAATGGGGTCA 8273 32 100.0 34 ................................ CAGCTTTTTCCAGTGCAAAAAAGGAACGGGAGCG 8339 32 100.0 35 ................................ CTGCATGGATCGCCACCTTTTCGTTCAATAGGAGA 8406 32 100.0 34 ................................ TCGGAAAAATAATACCTTGTGGTCTCTCCGTTGT 8472 32 100.0 34 ................................ GGCACTTCCACGCTGATATGCTCCCGGATGTACG 8538 32 100.0 35 ................................ AGCATATTAACAACATCCAGTTCGGAGAAGGCAAG 8605 32 100.0 34 ................................ CAGTAACTGTCAACCTCGCTCCAATGCAGTCCGC 8671 32 100.0 34 ................................ CGAAAGAGACTGCCAAACCATCAGGAGGACACTA 8737 32 100.0 35 ................................ AGCATCAGGATACCTTTTACGGTGTATTCCTGACC 8804 32 96.9 0 ...........C.................... | ========== ====== ====== ====== ================================ =================================== ================== 32 32 99.9 34 GTCACTTCCCTTGCGGAAGTGTGGATTGAAAT # Left flank : CCTGTATTTCTGTGGAAATGAGGTGGAAATATGCTGTTGTTGATTACATATGATGTAAATACAGAAAATGAAGCCGGAAAAAAGCGACTTAGAAAAGTAGCCAAACAATGTCAAAACTATGGGAGAAGAGTACAGAACTCCGTATTTGAGTGCATTGTGGATCAGGCACAAAGTGTGACGTTAAAATCTTTGTTAACAGAGATTATTGATGATAAAGTAGATAGCTTGCGATTCTACTATCTTGGAAATAATTATAAGACCAAGATAGAGCATATAGGTGTAGAACGAGGAATTGCAGTCGATCAGCCTTTATTCTTATAATTTGCAGGTGCGAGTGTCTAGCATACATAAAATTACCGGGAGACTCGCACCTGTAAAAATAAACAAATTTGAATGTGCTTTTTGTATAGACAGAGTATTTCAATAGTATACGAAAGTAAATTCAAATATATTTATAGATATTTCATAAAAATAGACAGATGTTTTTGTGAAATATTGCA # Right flank : TATTGAGCCGTTCTACATATGGGAATCCGAGGAGTAAGTGCTATCATCATAAATATTATAAAGACTTACTGAAATCCTTGGATTTGCCTGATATTCATTTTCACCAGTTGAGAAATACCTATGCAACCATTTTGCTGAAGAATAGTTTTAATTCAAAAGGTGTTTCGCATTTGTAGGACATGCCAAGGAAATTATATCCGTAGATGTCTATGGAGATACACAGGAAATTATAGAAGACTGTCTGGACGTACTGGAACCATTTATTGAAGAAGTTATTCCAAAAGAGAGGAAAGATCAGTATTATGATTATTCAGAAATGATTGAAATAGACTTAATTCTGGAGGAATATTTCAACGCAGCATGATAAAAAATAGAATAGTAGTGATAGAAAAAAGTACAAATAAGAATCGAACGTTTGTACTTTTTTCTTGCGTTAATCTATATACTTTCAAAAATTTATTTGATATAATAGGGACTGTTACAAGAACAAACAGTAAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTTCCCTTGCGGAAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA //