Array 1 24025-23791 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSFF01000003.1 Streptococcus mutans strain AM44-1 AM44-1.Scaf3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 24024 35 88.9 30 -.....AC.................A.......... CATGCAATTACATATTCAACTAAGGGGCCA TT [24016] 23957 36 100.0 30 .................................... CGTTCAAAACTTCTGCCCCAGCTGGCAAGA 23891 36 100.0 29 .................................... AGCATTCAAAGCATTTTTAAGTGCACTTA 23826 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 97.2 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AAGGATTTAGATGCCCAATACAAAGCAATCAAAAAACAACCAATACCTTTTGAAAAAGCTTTAGACAATATCTTTGGAAAAGATTTAGGTATCGAAACAACCGATCCGCTGGATGCACTATTGAAGTAGAAACACTAAATTAATAAGAAAGAGCCAAACCTCGAAAGTTTGGCTCTTTCTTATTGACTAAATCATGGTTAATGTAAACTTACATTTGGGTTAATTTTTTATTAATGCTCAAATATCACTGAATATTTAGGCATTTTCAATATGGAATCAAACTTGAGAAGCAACTGTCAGTCAATTTTATAGTAGAAATAAGGATGAACACATTAATTTGCTTTCTGAAATGAAAAAATACAGAAATATTTCTATATTTTTTCATTTATATTGTTAAAATATTTCGCAGATAGTGGTATAATAGAAACGCTTACAGTAAAGCAAATAAAAAAGCACCGAATCGGTGCGCACTTTTTCAAGTTGAATACGGATAAACCTTA # Right flank : AATAGAATCAAATTCTCCTAAGTCAGTTAAGTTTTAGAACCATGTTAGTTACTGATTTACTAAAATGCATTATGCGAAAGATTTTTAAATAAGCAAAAGACACTTGAAGCAATAATTCAAGTGTCTTTTATGGGACTTTCTTTAATTTTTAGGTAATGACCGTTCCGATGACTTCAATTGTATCATCTTCTTTTAAAATGATGTCATCATAATCTGGATTTAATGAGATGAGTCGAATTTCTTTGTTTTTTCGGTAGAGTTTTTTGACATATGCCTCATTATTTACAATAACAACGATAATTTGTCCGTGATGGATAGCTTTAGTCTTTTTAACAAAAATAACGTCACCGTTGTAAAATAAAGGTTCCATACTATTACCATTGACAGTAAGAGCAATATCATGTTCTGGAATTGGTATTGGGTATTTAATGGTTTCTTGTTTTTCATGTCCAACCCAGATACCAGTACCAGCTGAAACTTCACCATAAATCTGAATGTTT # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 117822-116329 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSFF01000003.1 Streptococcus mutans strain AM44-1 AM44-1.Scaf3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 117821 28 100.0 33 ............................ TAATTATGTAGGCGTGCCAATTAGCGGAAACGC 117760 28 100.0 33 ............................ TAAACACTTTGTCAATTTTTCCAGTTGACAAAA 117699 28 100.0 33 ............................ TAATTATGTAGGCGTGCCAATTAGCGGAAACGC 117638 28 100.0 33 ............................ TAAACACTTTGTCAATTTTTCCAGTTGACAAAA 117577 28 100.0 33 ............................ TAACTTTGCCGAACCAAGGATAAGAACCGTGTT 117516 28 100.0 33 ............................ TATACATATTTCCATCTGATTGAATAAAAATTG 117455 28 100.0 33 ............................ TGCGAAAAGCATTTGATGCTGATTACAACAAAT 117394 28 100.0 33 ............................ TTATGTGTTCTCTATGCTTCTGGTTATATTATA 117333 28 100.0 33 ............................ TACTCTCTTGAGAATTCAGCCCTTGCCATATTA 117272 28 100.0 33 ............................ TAAAACAGACCGATTGGAGTTAGAATTGACCGA 117211 28 100.0 33 ............................ TAAAACAGACCGATTGGAGTTAGAATTGACCGA 117150 28 100.0 33 ............................ CGACCCATTTCTAGAAAGATTTTCTGCAACAAC 117089 28 100.0 33 ............................ CAATCCTGAAGAAGCCGAAAAAAGAGGGTTGCC 117028 28 100.0 33 ............................ TAAGCGCGTGCAATTGCTGGAAAGTTATGCAGA 116967 28 100.0 33 ............................ TAGATAAAGTTAGAGCCATCAGCCACGTCTGAA 116906 28 100.0 33 ............................ CAGCAGATAATGGAATAGCGTTTGACTATTGGA 116845 28 100.0 33 ............................ TACGGCATGCAATGCGTAGATATAGATACAGAC 116784 28 100.0 33 ............................ TACTGCTGAAACGCAACTAGCACGCATGACTCA 116723 28 100.0 33 ............................ TGCACAACCATGTTGTTACCGTCAATCCGTTCA 116662 28 100.0 33 ............................ TAGTAATCTTTCCCCAATAAATCCTTTGTCATT 116601 28 100.0 33 ............................ TGGATAATTTATATTCTAAATTATTTATTTCTG 116540 28 100.0 33 ............................ CGCAAACGGAAGTCCGCACGCGCAAAATGAAAG 116479 28 100.0 33 ............................ CACTGTATTTCCAACCCGAACGCCAACACCCGT 116418 28 100.0 33 ............................ TACGGCATGCAATGCGTAGATATAGATACAGAC 116357 28 100.0 0 ............................ | T [116331] ========== ====== ====== ====== ============================ ================================= ================== 25 28 100.0 33 ATTTTACCCGCACGAGCGGGGGTGATCC # Left flank : GAAAATGAAAATAGCATCATAGAAATTGGCGCTGTCAAGATTGGTCCCTCTCAATTGGAAGAGTTTAATTATCTTGTGAAATATGATAAAATTCTACCAAAACAGATATCGAAATTAACAGGAATTAGTCAGGAACTTTTGGATCGTGATGGTAAAGACCTTCAAGTTGTACTTCAGGAATTTTTGAATTTTATCGGAAATCACGATCTTGTCGGATATGGGATAAATTTTGATATAAAATTTATAAATAAAAAGTTGAAAGAATTAAATCAGCCCTTATTGAAAAATCGAGTATATGACTTAATGCAATACGCTAAAAAAGAAAAATTATTTTTAGATAATTATAAATTGCAGACGGTATTAAAAGCATACGAAATAGAGGATGAGGTGCCTCATAGAGCTCTTCACGATTCTAAACTGATTTATGACTTGTCAACTAAAATGAATAAATTTTTGAAAGGGATCAATCAGAAGTAGCGGTTTTATTGGGATCTTTTAGT # Right flank : AGTGACAACAACGAATCAGATACAGAAATCATGTTTTACCTACACATATAGACTTGTGATGTTAGACCGATTGAAATTGATTCTTTTGGATAGAAGGAAATCAAATATATATATTAAGTGGATGACAATAAAAGTAAAATATTAGATAATAGAGATTAAGAATTATAAAGAATTGGAAAATGTTTAGTCGTCAAACCTAAAATCATTATAATGATACGAATATTTTTTTGATCAATTTTGTGATAATATAAAGAAGCGACATGCTTACCAATTATTTCAATCTGATAGAGGTAATAATGAAACTTTTATATACCGACATTCCATACAACATAACAGAGATTTTGGCCGAGGAAGCACAAATAGCTGCTAAGGCTGGTAAGCGGGTCTTTTATATTGCTCCCAACTCCTTGTCTTTTGAGAAGGAGCGAGCTGTTTTGGAGACCCTGCCTGAGCGGGCTTCCTTTGCTATTACCATTACGCGTTTTGAGCAGATGGCACGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTACCCGCACGAGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched ATTTTACCCGCACGAGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //