Array 1 933-50 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXWT01000040.1 Salmonella enterica subsp. enterica serovar Livingstone strain BCW_2869 NODE_40_length_43533_cov_1.72281, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 932 29 100.0 32 ............................. TCTTCGTCGCTGGCGGTTCCCCAGTCCCCCTT 871 29 100.0 32 ............................. ACAAACCCCTGTTTTGTTATCAACAAACTGTG 810 29 100.0 32 ............................. TTCAATTCCGTTAATCCAGGCCTGCCGTACTG 749 29 100.0 32 ............................. GCGGGCGCTCATGTCAAACGCCATCAGCGTTC 688 29 100.0 32 ............................. AGGATATTCGTGTTCTCATTGATGCGATCTCT 627 29 100.0 32 ............................. CTGTTTTGCAACCGCATCCCCGGATTCGGGAT 566 29 100.0 32 ............................. TTGCCACAACCACAATGGATCAGGAGCAATTA 505 29 100.0 32 ............................. AATTATCGAAAGGAGTTACTCAGGGGGGAGAC 444 29 100.0 32 ............................. CAGCGGAAGCGATCAGTGGTCTCGATACGGAA 383 29 96.6 32 ...................A......... GGCTCAGGTTGATGATTCTCATGAGACACAAT 322 29 100.0 32 ............................. GCTACTTACAGAGAACTACTGGCAAAAGAAAC 261 29 100.0 32 ............................. AAAGCGGTTGCTATTGAGTCTCCCCTGAGCGA 200 29 100.0 32 ............................. CGCTGATTACTATACATAGTCAGCGGGCAATA 139 29 100.0 32 ............................. GGGTGATCATGACGATCCAGAGCATATTGCCC 78 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GCGAATTTAAGAGTCGCATCTGTATTTAATGGTGTGTTCCCCGCGCCAGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 21645-20090 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXWT01000043.1 Salmonella enterica subsp. enterica serovar Livingstone strain BCW_2869 NODE_43_length_38718_cov_1.61124, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 21644 29 100.0 32 ............................. CCATTTTTGCCGCCATATGCAGCTCGACGACA 21583 29 100.0 32 ............................. GCGCGCCATTGCTGAGGGTAAACCGGCGATTA 21522 29 100.0 32 ............................. GCCGCTCGTTCGCAGCGCCGCATGACGACTCT 21461 29 100.0 32 ............................. TCTCAACAGGCACCACTTATTCTAACAGCGCC 21400 29 100.0 32 ............................. CGCCTTAAATTGCTGCCCGGCCTGGCTAACAG 21339 29 100.0 32 ............................. CATCAGATCCTCGCTATCTGGATATGGCTGCG 21278 29 100.0 32 ............................. TGTTGTTACTTTGTTCAGTCTGGCCCATAGCG 21217 29 100.0 32 ............................. CAAAATGTGTTGTTATGATGGTAGCCTTCAGA 21156 29 100.0 32 ............................. GCCGCGAAATCGCAGCGCCGCCTGACCGCCCT 21095 29 100.0 32 ............................. ACGCCCTCAAACACACGTATCTCGGCTACGAA 21034 29 100.0 32 ............................. TCTACAGACGTATTACAGCAAGGCGAAGCAAC 20973 29 100.0 32 ............................. CCCTGCGTCAGTGCGGCAAACGTCACCTCGTC 20912 29 100.0 32 ............................. GATTTATATCCATTTCCGCGAGCGAACCGGAG 20851 29 100.0 32 ............................. CGATCGGTATTCGACAAGCTCATCCAGCAGCT 20790 29 100.0 32 ............................. TGTGGGTTATCAACCTCTTATCTTGAGCAGAT 20729 29 100.0 32 ............................. TGGGATAAAGGACGTGCCGACACCGTTTTTTA 20668 29 100.0 32 ............................. GGGTTATAACCGGGATACCATCCGATCCAACC 20607 29 100.0 32 ............................. CCGCAACTAAGTTCTATGTGGATAGTACAGTT 20546 29 100.0 32 ............................. CGAATTTAAGAGTCGCATCTGTATTTAATGGT 20485 29 100.0 32 ............................. AATAGCACGCCTGCCGTTGTTTCCCGCGTCTT 20424 29 100.0 32 ............................. GGAGCACGGTAAACCACTGGCGCAAGGGCCGC 20363 29 100.0 32 ............................. CCAACAGACAACCAATGCGCAGGGGTAAGGCG 20302 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 20241 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 20180 29 96.6 32 ..........T.................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 20119 29 93.1 0 A...........T................ | A [20092] ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATTCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGAACTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGTGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCTAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //