Array 1 129647-131648 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI928193.1 Aphanizomenon flos-aquae NIES-81 scaffold00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================= ================== 129647 36 100.0 45 .................................... CCAGCTAACTTACCATGTAACCAACGTAAGCCATCTTCGTTATCA 129728 36 100.0 37 .................................... CTTTAGTTTTAGGTAGCTTGAGATTATCCATTAGACA 129801 36 100.0 34 .................................... AAGTTTGAAATTATGTGCATTTCTGCCCCTAAGT 129871 36 100.0 40 .................................... ATTCTTCTGTTAGTAAGGTAACAGTTTGTTGAATGAAAGA 129947 36 100.0 36 .................................... GACAGAGGGAACTAGATGTCAGCCCACTTAAAATCA 130019 36 100.0 43 .................................... AATCAATCAGAAATCTAGATACCCATAGAACCTAAGCTATCTA 130098 36 100.0 35 .................................... CTTCTAGTAAGCTATCTGGGACTTCTTTATCTATT 130169 36 100.0 38 .................................... CTGGTTGATACTTAGAAATATTAAACGCACTGGGTAGT 130243 36 100.0 39 .................................... AATGACCCATTGCTCTCCGTATTGTTCGATATCGTCATG 130318 36 100.0 35 .................................... CTTCTTGTAGTTGGTTTCTGACATATTTTCCTTAG 130389 36 100.0 43 .................................... AGCTTTTGTGCTAATTCAATATGAGACTTAGGACACCGATAAG 130468 36 100.0 36 .................................... AGGCAGGTATTTTATTTCCTTTCTTGCTACTTATGG 130540 36 100.0 36 .................................... ATGGTTTAATTTCTTTTTTGATTAGCTCTAATTGTG 130612 36 100.0 38 .................................... TTCCCAATGTAGCATCACACTAGGAATTAACTAAACTA 130686 36 100.0 41 .................................... CACTTTAAGTCATAGAAATCATAGCGAGTCAGCAGCCCTGG 130763 36 100.0 45 .................................... CAACCCTGTGGAGTGGGAAGGAAGGAAAATAGAATTATTTGGGTA 130844 36 100.0 41 .................................... CAGCTACACACCAATCAGATTTACCTCTCCAGTATTCTAGA 130921 36 100.0 35 .................................... GTCTCTTTCTTTAACTGTTGGTAATGTGTTTGAGC 130992 36 100.0 46 .................................... ATCGCAGTATTCTTGGCACTAATCTGACTTCTTACAGAGGTGACAA 131074 36 100.0 44 .................................... TGAATTAGCTAACTTCCAAAAGCGATCGCTCGAACTCAAGCAAA 131154 36 100.0 49 .................................... GTCTATGTGCAGGGTGGACACCTCTTCCGCTTCTTCCATCCTTGTGTAA 131239 36 100.0 41 .................................... TACGGGTTACTTGACAAATAAGAACTGTATATTTGTGCCGC 131316 36 100.0 34 .................................... ATTCCACAACCATCACTAGATTTTGCAGGTGTAA 131386 36 100.0 43 .................................... CAAGAGTCAAACTCTCTGCGATACAGTAGAGGGTTGGTAATAT 131465 36 100.0 36 .................................... GCTAGAGGAGATATTAACTCACTTTCATTACCATCA 131537 36 100.0 40 .................................... TACCACCACCAAAGAAAGCTCTATTGGCATTTTGCCTAGC 131613 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================= ================== 27 36 100.0 40 ATCGCTTCTTTTATAAGAAGTGGAATTAATGGAAAC # Left flank : GGTTTTGATTTGGGATGGTTGCAAGAAACGCACAACACTATCTCCGGCTGTGGCATTGGCAAAGGTGGCAATGGTAACTAAGATAGTATTGATAATTACTGCTGCTAGTCCTAAAGGTGCTATTAGCAAAATAATCAGTGTAATTGTCCCATTGAGAAATGCAACGGCTAAGTTCCGCACTAAGGCAGCACGATTAGAAATATACATGGTTTAGTTGGGATTCGGTATTAATTGTACTTTTTTAAGTTAAATCACACAGAAAATTTATACAAGTGATTTCATGCGAATGACGAATTTATTTATTGGTGATGATTTGTTGGCGGCGGGGTCAGGTCAATGGCGCAAATGCTGATGTTTCCGTCAACCCGGCCGATGTCTTTCTGTATAAGGGTTTCAGGGGTTTTGATTGCCTGTTTATTTTCTAAAAGCAGCCCTCAATTGATACCCCGTCGCAAATGGCATCTGGACATTAGGCTCTGTATGGGTTTATAATGATCGCT # Right flank : CTTCATTAGTAGCGTTACTATAATCAACTTTGAATAATCGCTTCTTTTATAGAAAGTCAAGATATGAGATCCCCGACTTCTTAAAGAAGTCGGGGATCTTTGGGTTTAGGATATTTTAAATTTCCTCATTCGCATGAGAAGTATTGAATAATCACAAAATTGAGATTATGTTGTTACACGAGATGTCAACAATATAACCAGATTGGTGAGGAAAATTCTACAATGTCAGAACAAAATAAAGATCAAGATCAAGAAATTTTACGTCAATATCTTGATTCAATTAAGGAAGAAGAAGAACGTAAAAAAGTACAAAATTTAGCACGCCTTTCTAGATTAAATATAGGGATTGCTGTTTTCCTTTCTCTGCTCATTCCCATTGGTGGATATTGTTATACCCGACGGTGGAAAGCATTTCTATGGCTTATGTGTGGTGGGGCTTTAATAGGGGTAGTAGTTGCTGGAAATTCTCGTAATAGTGAAGAAGCTATGGCACGAGCTTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGCTTCTTTTATAAGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.90,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 2 491688-491368 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI928193.1 Aphanizomenon flos-aquae NIES-81 scaffold00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 491687 37 100.0 37 ..................................... TTCAATCGTTATCCACAAATACCTCAGCAAAATATAA 491613 37 100.0 39 ..................................... CCAATGACATCAATGCTATCACCACAGAGCGCAATTATG 491537 37 100.0 25 ..................................... GCACTTCGCAGATTGGCTCAGTCTG 491475 37 100.0 36 ..................................... TGTATTGATTAAAGTTTGAAATAATTTCAAACTTTA 491402 35 89.2 0 ..........G..................-..-...A | ========== ====== ====== ====== ===================================== ======================================= ================== 5 37 97.8 34 GTTTCAACTACCATCCCGACTAGGGGTGGGTTGAAAG # Left flank : AGCTGCACTAATTTAGTTTACTAATCCGAACCTTGAAAATATAATATAGATACAATAGCGCCGTAGTTCATGCTCCTTGGAATCTCTGTACTATGAAAAATCTGGCTTAGTTTGGCAGTTGGAAGACTGTCATGCTTTCTGAGCCTGGTAGCTGCCCGCTTCTGATGCTGCTGTCGCAAGACAGGATAGGTGCGCTCCCAGCAATAAGGAGTAAGGCTTTTAGCCCTAGTCGTTTTTATAACGATGTGGATTTCCACAGTGGTGGCTACTGAATCACCCCCTTCGTCGGGGGAATCCTCCCAAATCTTTTTTTGGCAAACCATAAGCGGGGTCAAAAACCCTGGGAATCTGCCAAAACCTTGAATCCCTTGTCCAGTATTGATTTGACTCATTTGAAGAGTGATGAATGTCCTCAATTGAGAGCAAAAAAACAGATTTTTTAACAGGTTTGCCAAAATCGCATCTGGAAACCTGTATTGGCAAGGGTCTAGACGGGCGCG # Right flank : ATATAGGTTATTGACTTGCGTTAACCATTAAAATGGTTGCAAAATAGAAATGATCATGGGAGGGTTGAAAGGAGTGCTGCGATCGAACACATATTAATAATCAAATTAATGCCCTTGCAGCAATAATTTATTGTATTGTGTAGTCAATGTTAAGTTCATGCGACATTAATTTGCGAAAACTTAGAATAATTAAATTGACTCAGAAAAACAACCACCGCGACATTAATTTGCGAAGAACGACATTAATTTGCGAACTGCGACATATAATGTGCGAATGTACACAAATGGAGAATAGGAGACTCGAACCCCTGACCTCTGCGGTGCGATCGCAGCACTCTACCAACTGAGCTAATTCCCCTTAGTCGTGCTTAAGTCAAAAACTTTAGCACACTATATATCTTAACACTCAGGAAGGACAGATTTCACATCTTTTTCCAAAAAAACTTCCTGTACCTGCTGCAAATCCAAATCAATCAGATAATCAATCGTCCAATTAGCTT # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.09, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACTACCATCCCGACTAGGGGTGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.50,-13.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 243641-242082 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI928194.1 Aphanizomenon flos-aquae NIES-81 scaffold00003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ====================================================== ================== 243640 23 100.0 51 ....................... TATCTTTCTTTTTCATTTTCTTTCAGTCCACCACAGAGTTTCCGCATATCT 243566 23 100.0 49 ....................... GATACTATTGTTGTAAATGTATAGGTCTACTAAATGTTTCCGCATATCT 243494 23 100.0 49 ....................... CTGATTTCTCCACAAACGTTAAACAAGCTGCTAATGTTTCCGCATATCT 243422 23 100.0 50 ....................... TTGTTAACCATTCTGAACGCCAAAAGTCGTTGTCTGGTTTCCGCATATCT 243349 23 100.0 49 ....................... ATAAGTAGACTAGGGGGTAGACAAGAAACTACAATGTTTCCGCATATCT 243277 23 100.0 48 ....................... CACGGCTAACGCCGAAGTAGTATTGATGTTAGCAGTTTCCGCATATCT 243206 23 100.0 51 ....................... CCGAACAGATAGATGCGATCGCTCTGGCGGTCTTTAAGTTTCCGCATATCT 243132 23 100.0 51 ....................... CTCGTGAGCATATCTGAATCAAGCCGCTTACTTGCGTGTTTCCGCATATCT 243058 23 100.0 52 ....................... GTTACACCAGAATAAGCATAAAACAGTTGACTCCCAGTGTTTCCGCATATCT 242983 23 100.0 49 ....................... ATCATACTTCCCTTTACAGAAATTTATCCCAAACAGTTTCCGCATATCT 242911 23 95.7 53 ...........A........... ATATGCAGTAGAGGTGAACCAAAAAAGTAACCTGGAAGGGTTTCCGCATATCT 242835 23 100.0 51 ....................... GTGCCATGAGCTATCCCAGCGTCTTTACTTAATAGAGGTTTCCGCATATCT 242761 23 100.0 52 ....................... GAGAAGAGGGATACCTGCCAAGATATCCCCACAATGAAGTTTCCGCATATCT 242686 23 100.0 49 ....................... TAAAAATACTAACTGGCGATCGCTCGTGTTGAAAAGTTTCCGCATATCT 242614 23 100.0 54 ....................... ATTCTTATGATTGGGATTCTTTGGAGGATGCTGATAAACCGTTTCCGCATATCT 242537 23 95.7 49 .....................G. TTAAAAACACTGGATAAGTCCAGCCTCCAATCACCGTTTCCGCATATCT 242465 23 100.0 51 ....................... AAAAATGATTTATGTAAATGGCACGCAGAGTTCGCTTGTTTCCGCATATCT 242391 23 100.0 47 ....................... TTGTGGTCGTGAGAAGCCTGATTATGTAATTGAGTTTCCGCATATCT 242321 23 100.0 46 ....................... TTAGCCACTCTTCCCAGAAACTATACTCATTAGTTTCCGCATATCT 242252 23 95.7 51 .G..................... ATGACCAATCCATTCGCCACTAAAAAAGAAATATTTAGTTTCCGCATATCT 242178 23 100.0 51 ....................... AGGCGTACAACTACGATAGGTACAAAAATTGTCCTAAGTTTCCGTATATCT 242104 23 82.6 0 ..C...T...........T..G. | ========== ====== ====== ====== ======================= ====================================================== ================== 22 23 98.6 50 AATCCCCGCAAGGGGACTGAAAC # Left flank : CTGATTATTTATGATTTACCTGACAATAAAGCAGCCAATAAACGTCGGACTCGTTTACATAAAATGTTGAGTGGTTATGGTAAGTGGACCCAATACAGTGTATTTGAGTGCTTTTTGACTGCTGTACAATTTGCTCAGTTGCAAACCAAGATAGAAAAACTGATCAAGTCTGATGAAGATTCTCTTAGAATGTATGTGTTGGATGCTGGGAGTGTGAGAAGAACTATTACCTATGGTTCGGAAATCCCTAGACAAGAACAGGCTATCATTATATAATTGATAGGTGAGATTAAATTTTTGGCAGACCTAAAGCGGGGTCAAAAACCCTGGAGATTCGCCAAACAGCCAGAACCTTGACAACTAAATACTTTCAGCGTTTCATCAGTTTCAGTTTGTGCTTGACCCGAAGCCTGAAATAAGGTTTTTTGAGAGGTCCGCCAAAATCGTCTCTGGATTCCGCCCCCAGTTTATGTTTCAGACGGCGGGGTTTCCGCATATCT # Right flank : TACCCTTCCACTGCGGCTCAAAAAGTTGCGGAATTGGACGTGTGGGTGCGAGAACTGAAGAAACGGATGCCATCTAGTCATCATTGATTATTTTTATTGATTTAATCCCTTGGCTACATCTTTGGACTAGCAACCATTTTTTAGCTTCAGGTTCAAGGGCTGGCTTAATACGGAAGTTTAAAACATCTGCCCAAGTTTCTACTCCGTAACTACTAGCGAACGCCCTTTCAAGTTCCTTGAATTGTAACCAGTTGCGATCGCTGATAGCCTCAAAAACTGAGATAAATGTGTTCAGTGGTAGCAAGGTAGCTGTTTCACTCATTTTCGTAATCCTCAAAAATACAAACTATCGGCAAGATGTCATCTTCTATATCAATGACTTCAATTAGTCGTTTTCCCGTGTTTTTAGCAATCCGTTTGCAATAATCTTCAGTTGCGGCCATGTGCCATTCTTTGCGTTCTGTAACTGGGTCGAATTTCCTTTTCGAGCGTTTAACCTC # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.24, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: R [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.40,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 271964-272499 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI928194.1 Aphanizomenon flos-aquae NIES-81 scaffold00003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ==================================================== ================== 271964 23 100.0 50 ....................... TTGATGATTTTTTATCAACTGTTTCATTCTTTCTTGGTTTCCGCATATCT 272037 23 100.0 50 ....................... TCTCTCGTGGCACTGGATTAGACACGCTAAATTCTAGTTTCCGCATATCT 272110 23 100.0 50 ....................... TCCGCATAGCCTACGCGAGAAAGCAGATCAATTACTGTTTCCGCATATCT 272183 23 100.0 52 ....................... TTTTTCGGAGGCCACTGGTGAAGGTATCAAAGCACAGGGTTTCCGCATATCT 272258 23 100.0 50 ....................... ACGGACTGTATATTTATCCTTCTGCTGAGGATACTGGTTTCCGCATATCT 272331 23 100.0 51 ....................... CTTTAATTTTAGGAGATAGATGGTATAACCCTTCAACGTTTCCGCATATCT 272405 23 100.0 49 ....................... AATAGATTAGTAATTAAGTCTTTACCTAGACTCAAGTTTCCGCATATCT 272477 23 95.7 0 ......................A | ========== ====== ====== ====== ======================= ==================================================== ================== 8 23 99.5 50 AATCCCCGCAAGGGGACTGAAAC # Left flank : GTTAATTCAGAACACAAGGCAGAATTATTAAAGGTTATCGCCAATCGTTCCCCAAAGGATGCTTATTACAGTCTTCAGTACCGACATGGGGATTATAACGTAACTATGCGGTTAAGAGCTTGGCGACCAAGGGTAGAAATTCTCTCACCTTATGATTTAAGACAGAAAGTTACAGCCGATATTGTCAAGGAAATAGGACTTTACCAGAATAATTGGCCAATTTAATGCTTTACTATTTGTAATACAGTAACTATTGACAATTAACCTGCTAAATTTTACACTCATATAAAGACAAATTTGGCAGACCTAAAGCGGGGTCAAAAACCCTGGAGATTCGCCAAACAGCCAGAACCTTGACAACTAAATACTTTCAGCGTTTCATTAGTTTCAGTTTATGTTTGACCCGAAGCCTGAAATAAGGTTTTTTGAGAGGTCCGCCAAAATTGTCTCTGGATTCCGCCCCCAGTTTATGTTTCAGACGGCGGGGTTTCCGCATATCT # Right flank : AAATAAATAACTGATGATAGAACTTGAAGCAATACTGCTTGGTTAAGCCTGAAAAGTCATTAAGCTGTTACGCAGCTAAATTTGATAACCATAATTTACTTGAACTTTGTAGTGCGGGCATCTTGCCCGCTAGAATTATACAAACTAAATGCACAACAGCTTAGACATCTCCAAAAAATAAAGATACTTGACCTGAAAACCCTGTAGAGACGTTCCATGGAACGTCTCTACAATCTTTTTTGGAGATGTCTATTAGTAGGTTGTGGAACATAAATGTATCCCTGCGGGACACTGCGTGAACGCGGAGGAATGGAACGTTCATGAAGTGTGGGGTATCCCTGCGATCGCTGGAGGCATTATACTAAACACGGGTGAGATTTAAACTTTTGCCAAATGACAAAGAATCCAGATGTGTAGGGGTTTAGCACTGCTCATTGGTGTCAACTTAAGTTAGAAATGGCTTATCCGTTGTTCTTTGTATGGTAAAAGAGTCCAGCTTC # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.27, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 549243-550150 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI928194.1 Aphanizomenon flos-aquae NIES-81 scaffold00003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 549243 36 100.0 35 .................................... GACTTTGTCTGGAGTGCTAGTTAAGTCTCTTTTAC 549314 36 100.0 35 .................................... GTGCTCTGATAATGTTTGGAATAAATAAATGTTAA 549385 36 100.0 37 .................................... TAGAGTTAGGTTATTGAAAAACTGACCCTTCTAAAAA 549458 36 100.0 36 .................................... GAGAACAAATAGTAGTTAACTCTTTTACTGATCAAT 549530 36 100.0 32 .................................... AATGGTGAGCGAATCACCATTTTCTATGGAGA 549598 36 100.0 41 .................................... TATGTCAAGACTTAACTTAGTAAAATTATTTTTATACTATA 549675 36 100.0 35 .................................... TTTAAGACTAAGTAAGTAGGTATTTTAATGATTAA 549746 36 100.0 36 .................................... TAAAACAGGATGGAGAATGTTACCTGCACATCCACT 549818 36 100.0 38 .................................... CAGTATTTAACAGTTTTTACGTAATTACAAACATTTTT 549892 36 100.0 37 .................................... GTAGTATAATCGGTGGGAATAGCAAGGTATTAATTAC 549965 36 97.2 37 .........T.......................... GAAGTCTAAACAAAAGGCAGCTATCTCTTTAGTAAGC 550038 36 97.2 41 ..................................G. TTGATTCTGACTGCGATCGCAAGTCTTTTTGTTGCTTTTAT 550115 36 83.3 0 ............CA.............G..AA..G. | ========== ====== ====== ====== ==================================== ========================================= ================== 13 36 98.3 37 ATTCCCACTCGCTGGGGATATTAATTGAATGGAAAC # Left flank : ATGTTTGTGTTATGTTTTTGTATGTGATTGCCTATGATCTTCCTGATGATAAACGCCGTAAAAAGGTGGCTGATTTATTAGAAGGTTATGGTCAGAGGGTACAGTATTCTGTGTTTGAATGTCAGTTAAATACGGAAAAGTACAATGATTTACGTCGTCGGTTAAGGAAGATTATCAAGTTGGAGGAGGATAATGTCAGGTTTTATCCTTTGTCTCGTCATACTCTTTCCCAGGTGGAAACTTGGGGGGTTGGTGTTCCTGTGATTGAACCTCCGGGTTCGATTATTATTTAGTGATTTCTGATACTAGAGTGTGGTGTTGGCCGAAGGTCAGGTAAAATGGCTGAAGTGTTGATTTTATGGTTGTGAACTTCGGTTGCTTATTGGGTAAGGGTTACGCGGTTTTTAATGGCCGTTTTGTCGGCTGGTTGGCGGTGGTTTTTGCTGACCTTCGGAAAGTGGGTCTAGACTCCTTGCACAGTAAGGGGTTAAAATAAAGGG # Right flank : CGTGCGATCGCTAATAAAGCCGTGTTTGTTTTAACCTTAAAAAATGCTGCAAACAAAAGTTAATACAATACATTTAAACTACTAAGCGTAATTTAAAGAAAAACTAGAGTTTAGTACCTGCATAAATAAGAACCGATGTCAAAAACAAGAAAATATTTGTAATAAAATTACAATATGCAGGAAAACCCTTGCAGATAAAGCATTTTAGGGATTATCTAGAGAAATGTTGCAATATTTTATATTTATGGACAAATACCGAATTAAGACTATACAATGCGTATATCAGCTACATAAAGGAATTACTAGTGCCAGAAGAATATTGGCGGGCTAAAATTTGGGGTTTACTACATGACCCTGTATTAAAGGCATTACATAACAATAGTGGTTGGGGGAAAAATAGCTTCTATGAACAATTAGAAGTTATGAAACCTTGGGTTGAGACAGGTAGAACCCCTGATCAATCAGGTGGTAAAGCATTAGCAAATATATTGTTAGCGGAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCCCACTCGCTGGGGATATTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 238380-240350 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI928192.1 Aphanizomenon flos-aquae NIES-81 scaffold00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 238380 36 100.0 35 .................................... AATCAGAAGTGGAAATGTTTTCCTTTTTGCCCAAA 238451 36 100.0 33 .................................... AACCTACGGAGATTGAGGATTTAAATGATTTTC 238520 36 100.0 36 .................................... ACAGTAAATATCGACCTTCAGTGGGGGTGTTAAATC 238592 36 100.0 37 .................................... AGTTTATTGCAGACTCTACAGACCAAACGCAACTATG 238665 36 100.0 34 .................................... TGAAAAGTTATTGGCATTAGCTAAATTTGCAGAT 238735 36 100.0 37 .................................... TACTCTATAGAACAAGGATGTTTAACCCAAATGCCTA 238808 36 100.0 36 .................................... GAAGTAATTATGGTTTGCGCTCCGACTTTTGCAAAT 238880 36 100.0 38 .................................... AGAATGGGAAGCGGTGCGAACTCAATCAGTGTTTCTTT 238954 36 100.0 37 .................................... ATCGTCAAATGGCGATTGGGGACATAAACGATTTGAT 239027 36 100.0 35 .................................... ACAATGGAATAATTGCGGAACATCTGGATGGAGAC 239098 36 100.0 36 .................................... ATTATTTGGAGGATATTTAGGTTATAATATTCTCAT 239170 36 100.0 34 .................................... AAAGACAGAACTTTGGCACTACTGGGGACAGGTG 239240 36 100.0 34 .................................... TGTATGACAGCAAGCCTTAAAGCTTTCTATTTCT 239310 36 100.0 34 .................................... TTTAGACGGTTTTGACGGTAAACACTTAGAAAAT 239380 36 100.0 34 .................................... TTCCAGGAGTAATTGATAATTCGGAGTTATTTAA 239450 36 100.0 36 .................................... ATAATACTGGTAATACCGTAAGCTCAATTCATTCTG 239522 36 100.0 37 .................................... CGTAATGGATTGCTTCTCTAGTATCCTGTACATGACG 239595 36 100.0 38 .................................... ATTGGGACTTAGGGAAAAAAGTTATTGAACTGATTACC 239669 36 100.0 38 .................................... TAGTATGGTTTTACAGCGTGTTACAAAATCTTGTAATC 239743 36 100.0 38 .................................... TATTAAACTAAAACCGGATAGTAATTGACTACACCCCT 239817 36 100.0 36 .................................... TTTTTGATTGCTTGATGCTCTATCTTGCCAATAGTT 239889 36 100.0 35 .................................... TTATACCTGCCATATTCGTTCTGTTAATGGGAGGC 239960 36 100.0 35 .................................... TTATTTTCTAGAATATTTATTTTATTCGTGTGGGA 240031 36 100.0 36 .................................... AGAAGGTAATAAAGATAGAAACTTTTTGGAGGGATC 240103 36 100.0 34 .................................... TTTTACCCCAATACGAGTTACCAGGGGGAACTTT 240173 36 100.0 35 .................................... GGAGACATCGGGTTAAGTGATTGGATGGGATTATC 240244 36 100.0 35 .................................... GTTCTTGAGGGTAATCGTACTTAGAGATACTATAA 240315 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 28 36 100.0 36 GTGAAGTAACCTATGATGCCGTGAGGCGTTGATCAC # Left flank : GTTGGCGTAAGGCTTATAAATTACTGGAAGGCTACGGTGAAAGAATCCAATACTCAATTTTTCGGTCTTGGCTGAATATGCGATCGCGGGAAAAGTTACGTTGGGAACTGGAAAAAATATTAACGGCTGAAGATAGTTTACTGCTGATTCGTCTTTCTAATCAGTGTGTGACTGACATACCAAAATATAATCGTCCTAATGCTTGGTCATTTCCAGAGGAAACTTACAAAATTTTGTAATGCAAGAATATCCGGTTGTTAGTTATCAGGACACAATAAAAAACCTGGAAAGTTTTTAGAGATATACTGTTGAGGATTTTGAGGACACTATGAAGTGCTTGCATTTGTTCTGGAAACTATTTGTTGTAAGGGATTGAGGGCAGGTGAATCTTGTTGAAAATGCAATTTAGGTAAAAAGTCACCAAACTTGTTGCATTCAAAAGCAAGATGCTTGTAAAATGCGGATTGAACAGCTTTCTGATATGAGTTTCAGGCAACGCC # Right flank : CCTAATAGGGCTTTCTTTGGTGGTGGTAATCGTAGTAATNNNNNNNNNNNNNNNNNNNNNNNNNTTGATCACAGACATGGGTTCAAATCCCATCTTTGGGTTTATTGGTGAAGTAACCTATGATGCCGTGAGGCGTTGATCACGTGCAAAACAGTCTTGCACTTTTTAGCAATATTATTGTGAAGTAACCTATGATGCCGTGAGGCGTTGATCACATTCAGAAACATCATCAGTATAATCATTTTCCTCTGTGAAGTAACCTATGATGCCGTGAGGCGTTGATCACTTTCCTGTAGTTGCAGAACCACGATACCTCTCTCGTGAAGTAACCTATGATGCCGTGAGGCGTTGATCACAGAAGCTGGATGTCTGGAAGCTAAACGGTTTACGAGTGTGAAGTAACCTATGATGCCGTGAGGCGTTGATCACCCTACTATACCCGACAGAGCTAAACCTTTCAGATTGTGTGAAGTAACCTATGATGCCGTGAGGCGTTGATC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAAGTAACCTATGATGCCGTGAGGCGTTGATCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 2 240457-241313 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI928192.1 Aphanizomenon flos-aquae NIES-81 scaffold00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================================================== ================== 240457 36 100.0 36 .................................... GTGCAAAACAGTCTTGCACTTTTTAGCAATATTATT 240529 36 100.0 35 .................................... ATTCAGAAACATCATCAGTATAATCATTTTCCTCT 240600 36 100.0 34 .................................... TTTCCTGTAGTTGCAGAACCACGATACCTCTCTC 240670 36 100.0 37 .................................... AGAAGCTGGATGTCTGGAAGCTAAACGGTTTACGAGT 240743 36 100.0 37 .................................... CCTACTATACCCGACAGAGCTAAACCTTTCAGATTGT 240816 36 100.0 34 .................................... CTAAAAGTGCTTCTTCAAATAATAGTCTGCAGGT 240886 36 100.0 35 .................................... AATACATGGTAAATGCTGCTGCCACCAGACAGCAC 240957 36 100.0 36 .................................... ATTGTGCCAAATTCCTTGTCTTTGGCATCCAGTGTT 241029 36 100.0 36 .................................... ATTTCGGGATATGCTGCATTGTCCGGCACGAAATAC 241101 36 100.0 36 .................................... GTGCATCTGTAATAAGCTGATTTACAAATTCGATAC 241173 36 100.0 69 .................................... TTCTTAAGACTCGGTTTAGTTATGGCGGTTTGCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 241278 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================================================== ================== 12 36 100.0 39 GTGAAGTAACCTATGATGCCGTGAGGCGTTGATCAC # Left flank : GGCGTGAAGTAACCTATGATGCCGTGAGGCGTTGATCACTTATTTTCTAGAATATTTATTTTATTCGTGTGGGAGTGAAGTAACCTATGATGCCGTGAGGCGTTGATCACAGAAGGTAATAAAGATAGAAACTTTTTGGAGGGATCGTGAAGTAACCTATGATGCCGTGAGGCGTTGATCACTTTTACCCCAATACGAGTTACCAGGGGGAACTTTGTGAAGTAACCTATGATGCCGTGAGGCGTTGATCACGGAGACATCGGGTTAAGTGATTGGATGGGATTATCGTGAAGTAACCTATGATGCCGTGAGGCGTTGATCACGTTCTTGAGGGTAATCGTACTTAGAGATACTATAAGTGAAGTAACCTATGATGCCGTGAGGCGTTGATCACCTAATAGGGCTTTCTTTGGTGGTGGTAATCGTAGTAATNNNNNNNNNNNNNNNNNNNNNNNNNTTGATCACAGACATGGGTTCAAATCCCATCTTTGGGTTTATTG # Right flank : CGATGCGATCGCCCATTTCTTAAAAAATCGCCTAATTCTTAAAGCGATCGCCCATTTCTTAAAAAATCGCCTATTTCTCAAAGCGATCGCCCATTTCTTAAAAAATCGCCTATTTCTCAAAGCGATCGCCTAATTCTTAAAGCGATCGCCCATTTCTTAAAAAATCGCCTAATTCTTAAAGCGATCGCCCATTTCTTAAAAGAATCGCCTATTTCTCAAAGCGATCGCCTAATTCTTAAAGCGATCGCCTATTTCTATCCAGCCGTGTTCTTCTACAAATCGGTTAATATGGGGATATTGTTGTTCAAAACTGTTGGATTTTGGCATCTTGGTAATTTAGAAAGCCCCTTCATATATTTCTGTCAACATATCATGAAATCCCCATCCTATATCTTCAGTATCTTTCATAATTTTTCGACAACGTTGTTCAAAGATATCTTTTAAATTAGCTTTGATAATAATTTCTACAACCTGCTGATATACACCTTCCATACTAAGAT # Questionable array : NO Score: 3.05 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.20, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAAGTAACCTATGATGCCGTGAGGCGTTGATCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 3 701372-701118 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI928192.1 Aphanizomenon flos-aquae NIES-81 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 701371 36 97.2 36 .............C...................... TATACATCAAACAAGGAAAAGATATGACTCTCTGTC 701299 36 100.0 37 .................................... TATTCTAGTGATCTTTCTTTGCCTTTATTCTCAATCC 701226 36 100.0 36 .................................... ATTAGTTAAAAATGACATTAATTTGTTAACAGTGAC G [701203] 701153 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 4 36 99.3 37 TTTCAACCCGCCCGACTCCGGGAGGGGTGTTGAAAC # Left flank : ATCACCAATATCCCATACCCTAATTTAAAATTGGGACTGAAATTTTGACTCTTTTGCCTATTGCCATAAATAATTTGTTGTGCTAACATAAGGTATTAATGCGGATATGGCGAAATTGGCAGACGCGCTAGATTTAGGTTCTAGTTCCGAAAGGAGTGAAGGTTCAAGTCCTTTTATCCGCACTTTTAAACAGATAGTTGAGTTAATAGTGATGTTGTGCTGTCACTTGCCGAATTATTTGACCGCGTTGACAAATTGATGTCCGTATTGCCAAATTAATTGTCTTTTACGCTCAAAATCAGGATTCTGTTTATTATAAAAATCTATCAGAGTTAAACTCACGACCTACTGATCTTTCAACCCACCTAAGGAATGTGGATTTATTAACTTACAATTCTTGATAACGACCGTCTAACCTAATGTTAAATTACATCCATCAAGATTTGCACTTTATTTAATCCTCATTCCTAAATATTTTATTGTATTTTTGAACTAACGCA # Right flank : TTTTGATAATTTATAGAGCGATCGCATCCCTGGATGAAGGTAAAGCTGTAATTCGTGTGTGGTTAGATATTATTTATCAGGGGTTAGCTAGTGTGTTAATTCTGTGTATTTTTGGAGGGATTGTCCAGAAAATTATTGGTGTTACCGTAGTTTACACCGAAAGCATCTGTTCCAGGCACGTTCTCATAAAAATATGACGACATATTTTGTGCATGAAGTCTTATAGGATAAGGGATTCAGAATTAACACACTAGGGGTTAGCTAAAAAATTGGCTGATTAAAACTAAAGTCGCACGATTACTGTATATTGGGGGCATCGCTTGCTTTGAATGAAAGTACGATTCCTACGGAGTGCTTCGCTATCGCTCTAAATAAAATTTTATGAACTATATTTAAATATTATTATTGCAGCAATGGATAATACTCCTGTACTCTTGAAGAATATCAATCAATATCATGACAATGTGATGGTTGAAATCTGAAACTATACTTTAATTCAG # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTCAACCCGCCCGACTCCGGGAGGGGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.50,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 4 1424691-1423277 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI928192.1 Aphanizomenon flos-aquae NIES-81 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 1424690 37 100.0 35 ..................................... TCTTGATTGTTCGCTGACATGGTTGAAGTAAAAAA 1424618 37 100.0 38 ..................................... CGTTACAGCAGCGGTAACATCGGCAGGGGCAGCAGCGT 1424543 37 100.0 35 ..................................... AAATACTGCCCCACGGTTAGCTGTGTGGTAAAAGA 1424471 37 100.0 35 ..................................... GAACTAACCTTTGTCCTGCAAGGTGGACTAAGTAG 1424399 37 100.0 34 ..................................... AAGTTTGCGAAAAGGACTTAATAGCCTTACGGAA 1424328 37 100.0 36 ..................................... CAATATCCCCGTTAGCTACAGAAGAGGCGATCGCAC 1424255 37 100.0 36 ..................................... ATTATTTTCCTCTACTTGACTAAATGGATTATAGGT 1424182 37 100.0 40 ..................................... TAAGCATTTGGCTTCACTCCTTATAGTTGGGGATTGTGAA 1424105 37 100.0 34 ..................................... TGAACCAGGTCGAATAACTCGATGTCTTCTTGTG 1424034 37 100.0 38 ..................................... TTTGCATCTTTACATCTGTAATAATCAATTCTGAAAAT 1423959 37 100.0 35 ..................................... TACAGCAGCCTTCCCTGACCACTTATACGAGTCAG 1423887 37 100.0 40 ..................................... GCTGCATAGATTAAAGGTCAACTACCATGCCAGAGTTAAA 1423810 37 100.0 35 ..................................... ATATTCGTAGGCTGGGACTGTGTAGGCGATACATT 1423738 37 100.0 33 ..................................... AGACCGTTATAGTCAAAACTGTAACCACGATAA 1423668 37 100.0 33 ..................................... ATTACACTAAATGGTATTGGACCGGATAGAGAT 1423598 37 100.0 33 ..................................... TTGCAGTTCTAGCTCACGTATGCGTTCTGACTG 1423528 37 100.0 35 ..................................... TTATTAGACTCAAGTATTCAATGTCTGGAAGATAT 1423456 37 100.0 35 ..................................... ACAATTAACAAAGAACTCATGCCACTTGTTTTTAT 1423384 37 100.0 34 ..................................... GCCAATGAATCTGACGCAATGTATGAGATGTCAG 1423313 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 20 37 100.0 36 GGTGAAATTAGCTTTGAGTAATCAGGTTAATTGCAAG # Left flank : AAGCAGATGTAAATGCAGCTAGAAATCATCTGCTAAGATCAAGTTTCTTGGAAAGTGGTGAATACCGCCTTTGGGATTGGTATGAAGCACATCAAGAAAATACCTCGCTTGGATCGGGGGAATTTAAGCCTGATGGAGAAATCCTATTTAGTGGAGACTTGCCACTAAGTGAGACTGAACACTCGATTAGTAAGTCTGTGAAGCAGGAAGCGGAAGCGATCGCCGCATCATCGGTGGAATATGCCGATCAATTAACCCCCCAAAAGGGGAACAAAGCGCGGAAGGGAGGGTGTAAAAAACCTAAATCCGCAAAAACAACCTCAAAGCTAGACACCGTAAGCGATCCGAACCTTGACAATAAGCCAGATACTCGCGCACCTTGCACATCAAGCATTTCACCGAATTCAGTGGAAAATAAAATTCCCAAAACTAAGAAAAAAAAGAGATCCGCGCAATCATCATCTGAAAGCTTTACACAGCTTACTATCTGGGATACGGCA # Right flank : ACCAGAGACAGATTATTAATACTACACACAGCTAAATGCAAAGCATCCAAAGTTCTTAAAGGCAGATCAAACCTGGATATCCAATCTCTAGCTAAACGGTAATGTTGATTTTCCAATAAAACAAGACCATACAAACCTTCATTAAGATGATTTTCAAACAATTCTGTAATCCGTCTAGCGTCATTTTGGGAAACTTCACCCATTCTTACCCTACGAGATAAGGCAGAAAATAATTCCACCTCAACTAATTGACTAATGATCGGTTTATCTTCTTGTTTTTGTAATAGTTGTTCAACAACAGCACTTAATTTTTCAGGCACATAATAAGAAACAATGGCACTAGTATCTAAATAAATCAATATCTTTCGTTCTCTCTTTCTTCTAATATCGTGGTACTCATTGAACTTCCTTTTAAAACTATGGATTTTCTAAAATGGTTTAAACTAGGAAATGCTTTTTTTACCTGTTGGGGAGGAAGAAGACGAGCAATTTCTTTGCCT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTGAAATTAGCTTTGAGTAATCAGGTTAATTGCAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 5 1506234-1508393 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI928192.1 Aphanizomenon flos-aquae NIES-81 scaffold00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 1506234 37 100.0 35 ..................................... GTCTGAACCTGTTCCAGGGAATAAGCCACATAAAT 1506306 37 100.0 38 ..................................... TAAACCTCTTAAAATGCCACCGAAATCAGACATTAATT 1506381 37 100.0 34 ..................................... GCTTATTTCTAGGAAAACCATCAAGAATAAAATC 1506452 37 100.0 36 ..................................... ATTTCTGACGTAATGGCATCTAATGACTTTTCACAT 1506525 37 100.0 37 ..................................... CTGTTAAGGTAACGCATACATGGCTTTTTGGTGACTG 1506599 37 100.0 40 ..................................... TAGTTACGATAAGAATGCAGCACTTTATACCCGAATCAAG 1506676 37 100.0 39 ..................................... ATCTGACATATTAGATAACGAATCAACTATCACTACAAC 1506752 37 100.0 33 ..................................... AACGTATAAACTACCAGGAATGGCTTTTATTTC 1506822 37 100.0 34 ..................................... AATGTTGTCACCACTAGGAATGTAACTAGTGTTA 1506893 37 100.0 41 ..................................... ATCAACATTTTTTTCCTCCAGATTATGAACATGAATTGCAA 1506971 37 100.0 36 ..................................... TGACTGAGTGAATTGTGCTACCGGAGATCCGGGCTT 1507044 37 100.0 33 ..................................... TTGCTAATCCTCGTGGTGGCACTGGCACAGATG 1507114 37 100.0 39 ..................................... GTTGTTCCGCGTCGGATTCTTCTTTGAGTTGATTCAAAA 1507190 37 100.0 35 ..................................... ACTAACAATGGTAACTTAGGTGTAACAGGAACTTA 1507262 37 100.0 34 ..................................... AAGTATTACTTTACTATCATAACCGCACAACCAC 1507333 37 100.0 34 ..................................... TCCAGATTAATTGTTGTAACGTTACATGAGGTAA 1507404 37 100.0 38 ..................................... CACTCTTCTAAGTGGACGATTACCTGTTGCTCACCAAA 1507479 37 100.0 39 ..................................... GCCTACTGCCATCACTGTTAACTTTGCAATAGTTGTAAG 1507555 37 100.0 33 ..................................... ATTAGTTAACACTTCCCAATGGAATTTATACTC 1507625 37 100.0 33 ..................................... AGCAAAGCGGTAGCAGTATCTCTGGCAGACTGA 1507695 37 100.0 37 ..................................... TTCATAACTTTGTTATATTGATCATCAGTTAATAAGA 1507769 37 100.0 40 ..................................... CCTTAATACCATTAACATTGCAATCGAATAAGGTACAACT 1507846 37 100.0 35 ..................................... ATTAGCAAAAGGATCTAATAAATTAACAGTATAAT 1507918 37 100.0 35 ..................................... TCAACTTGTCTACTTAACCATTCAATTGTCTTTTC 1507990 37 100.0 35 ..................................... CTCAATGGCTTCAAAACCTGCCTTGAGGACGATAC 1508062 37 100.0 35 ..................................... TTGTCAGGCGATCGCCGTATCACCGTAACAAACGA 1508134 37 100.0 37 ..................................... TTATATCCCAGTTCGTGACCTGCGAGTACCCTGGAAT 1508208 37 97.3 35 ............T........................ ACAGCCTATACAGCTAATGATGTTTACGGGAACGA 1508280 37 97.3 40 ............T........................ TTTAAGGGTACTAGGTTAGAGGAAATCAAAAACTTTTATA 1508357 37 97.3 0 ..........................A.......... | ========== ====== ====== ====== ===================================== ========================================= ================== 30 37 99.7 36 ATTGCAATTTCACTTACTCCCTATTAGGGATTGAAAC # Left flank : ATGAATGTTGTTGTTTCTTACGATATTTCTGAGGATAAACGCCGTACTAAAATCCATAGTATCCTCAAATCCTATGGACAATGGGTGCAGTATAGTATTTTTGAATGTGAGTTAACTGATACTCAATATGCTAAATTGCGATCGCGTCTTCATAAACTCATTAAACCTGAAACCGATAGTATTCGCTTTTACTTCCTTTGTGCTTGCTGTTTTGGTAAGGTGGAAAGAATCGGTGGTGAACAGCCCCGTGATCAGACGATTTTCTTCGCTTAATGCGCGGGGGGGTGGGTGTAAAAAATTCAATTTCTCAAAAAATGCCTGAAATCATGTCTACACAAGCTTTTCATGCAGTTCATGGAGTTCACCCATCCGCGCACCTTGCACAGCAGGAGTTTCAGCTATTTTACTCCTTGACACTTTTCTTGAAATGGATTATCATAAAGGCATCCGCGCAACTGAACCTTGAAAACTACATATATATAGGCTTTCAGCACCCCGCG # Right flank : CGCTACAGGCGTAAAATTCCATCACACCAGCCCCCATGAATTGCACTATTGCCAAAGCCCTGAAACTTTATTGATATCGTCACGATTTTATTGGGTTTCAGACATATTTTGGAAAATTGGCAATAGTATTGATCTAAAGACATAATTCAATTTATGACCCTAGACTCAAGCATTGGTCTGACCAATATAGCAATATTGAATCATTTAGCACTGAATTAATGAGGTTCATTATGATTATCTCAAATCCAGTTGACAAAACCGCAAATATTAGTCTGCAAAAAGACACACTACTTATAGAATTAACTGCTGAAGAGTCTTCTAGTATTGTTGGAGGGTTTACAATTAGAAATGATTCAGGAGGTACAAGGCGTTTTTATAATTTAGGGGCAAATGTACCAGCACAAGTGCAAACTTTACAACCTAATACAGAAGGCACTTATGATGGAGAATACATTATATATAACACATCAAAGACCGGATTTGAACCTGTATTAGTAAAA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCACTTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 5193-3126 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI928195.1 Aphanizomenon flos-aquae NIES-81 scaffold00004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 5192 37 100.0 37 ..................................... TTCACTGATAAATTCAATCACATTATCCTCAGCACGT 5118 37 100.0 34 ..................................... ATTTGGATCTTCCTTATACTTACTTCCATCAGGA 5047 37 100.0 34 ..................................... ATTTCCCCATACGGTTTCAGGTACTCGACAACCA 4976 37 100.0 37 ..................................... CAATTCAGTTTGCACCGGAAGCGATTGCTAGGGCTAA 4902 37 100.0 32 ..................................... AATGCTTTACCTACTTTAGTACCGGACAAAAC 4833 37 100.0 36 ..................................... TAGCGACACATAATGAATGGACGGAGGAAAACGAAA 4760 37 100.0 35 ..................................... TCCGTGTCGAGAATTAATAGTTTAGGCATGATTGG 4688 37 100.0 34 ..................................... TGAATTAGCTCTATTTTTCAACACTTCTTTGACT 4617 37 100.0 33 ..................................... TAAATTATTCTGAATTGCTAACAAATCTAAAGC 4547 37 100.0 36 ..................................... AGCATCAAATGATTTGTAACTGAGATAACCATGCTT 4474 37 100.0 34 ..................................... TGTTTCCGGTATTTTCTCAGGGTGTTTTCAGAGT 4403 37 100.0 37 ..................................... TTGTTATCTATTGTTGGTAATGAGATACAAGACATTA 4329 37 100.0 37 ..................................... TATGAAGTATATGATACAGAAAGAGAAGTAGAGGATC 4255 37 100.0 33 ..................................... TAGTTTTGATGGCACTTATTTTATCCATCTCGT 4185 37 100.0 35 ..................................... CTTTGTAGCGCATAGAAATACCTAACCATTCATTA 4113 37 100.0 38 ..................................... ATATGAAGGTAACTATATTAGTGCTAAGGAAGCTAATG 4038 37 100.0 36 ..................................... CAGATGCTAACTTAGTTAATAGTTCATCAAATTGAG 3965 37 100.0 34 ..................................... CTGTATCTGCTATATCGTCTTGCACGGCTAAGTC 3894 37 100.0 37 ..................................... AACGTCTGAAATTTGCGTTGCTTGAACTGTTTTGAAT 3820 37 100.0 39 ..................................... TCCAATTTCTCTATTGACGAATTATCTCTTAATCTTCAG 3744 37 100.0 35 ..................................... TACTCGCATCATCTTTATCAAGTATTCGAGCGCAT 3672 37 100.0 35 ..................................... GTGGGGTTATATATCATTTACCCATTGTAGCATTT 3600 37 100.0 37 ..................................... TAAAGCTAACCTTAATGCCTCTAGAAATCTTTGCAAC 3526 37 100.0 35 ..................................... TTAATGTACTGGTTAAGATATAAAACACCCTTGTT 3454 37 100.0 35 ..................................... AACTTTGAACTCTTGTCCGTTCATGGATATCGTTA 3382 37 100.0 36 ..................................... GCCATTCTCTAACCGTACTGCTTGACTCATACTGTT 3309 37 100.0 35 ..................................... GACCTGTTTATTTTGCTAAAAAACTTCACTACTAA 3237 37 100.0 38 ..................................... CTTGTGGCGAAACTTTCGATTAGCTACTTTGTAGTAGA 3162 37 97.3 0 .......................T............. | ========== ====== ====== ====== ===================================== ======================================= ================== 29 37 99.9 36 ATCGCAATTTCACTTACTCCCTACTAGGGATTGAAAC # Left flank : AAGTCAAAATATGGAATTTCTTTTTGTTTACGTCACTTGTAAAGACCGTGCTGAAGCTCTTAACGTAGGTAGAGCCGTAGTAGAAGCCCGTCTTGCGGCCTGTGCCAACATAATTGACGGTATGGATAGTATTTATTGGTGGCAAGGTGAATTACAAGTAGAAAACTAGAGAGCGATCGCTATTCGCTGCTGCAAGCAGTTCGCTTCCCCCTTCGTAGACATCGCCCCTACCAAATTATTAAGGGAAGCGATCAGACGATTTTCTTCGCTTAATGCGCGAGGGGGTGGGTGTAAAAAATTCAATTTCTCAAAAAATGCCTGAAATCATGTCTACACAAGCTTTTCATACAGTTCATGGAGTTCACCCATCCGCGCACCTTGCACAGCAGGAGTTTCAGCTATTTTACTCCTTGACACTTTTCTTGAAATGGATTATCATAAAGGCATCCGCGCAACTGAACCTTGAAAACTACATATATATAGGCTTTCAGCACCCCGCG # Right flank : AGGAGCGCGATCGCCGCTTTTAATCCGAAACATTGAATTGCAATTTCACTTACTCCCTGTTTCCGCACATCTAATCCCCGCAAGGGGACTGAAACCTTACTTGAATACGATGGCGATTACTAGGTCGTGCTTCGCTATCGCCCCGCTCTTAGATTTCCCCCAAAAAAATCACCAAACAGATCGCTCCACAACAAATATTAAAAATTTCCCCTAAGAATGCTGGAAAGGTTGACCCCACAAATCCCATATTTCCTTATTGAAAGGACTGCGCCATTTCCGAATCATTGCTTGCTCTAAAGTTTGACGGGGTTTTCTATCTACTGGGGCATCCCACCAAAAGCCGATATTAATAGCTGTTGTCATATCATATTTATAATGTAATTCTTGATAACTAGCGATATATTCTTTACAATCGTGGGTATTCTTCCAGCGTTTATTACTTTGGCAAGTTTCCCCAACATAAAGCAGTATTTCAGCAGCAGAATCAATCACAAAATATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGCAATTTCACTTACTCCCTACTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 2 47413-48031 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI928195.1 Aphanizomenon flos-aquae NIES-81 scaffold00004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 47413 36 100.0 35 .................................... TAAAACTGGATGAAAATTAACGACACCGCCTTTAA 47484 36 100.0 39 .................................... TCTCTATAAGCTGACTCACAATAACATTAACTCCTAATG 47559 36 100.0 34 .................................... ATGACGGTATTGTGAATTTCTTCTAGAGGATTGT 47629 36 100.0 34 .................................... GCCACTTCATGAAGTTGCTGTTCTCAAATTGCTG 47699 36 97.2 42 ...........T........................ GATTTTATTTGTGCTACCGCGTTTCTAATTGTCAGGATTGCT 47777 36 100.0 36 .................................... TGGTCGCCTATTGTGATTCCAGTGATGGATAGTATA 47849 36 100.0 37 .................................... TTTTGGTCATTGTTAGCCCATACATGACGTTCCCCTA 47922 36 100.0 38 .................................... TCAAAGAGGCTGTAGTGTATTCTTTTCCCTGGGGTAAT 47996 36 80.6 0 ...........................GGGTAC.G. | ========== ====== ====== ====== ==================================== ========================================== ================== 9 36 97.5 37 GTTCCCACTCGCTGGGGACGTTAATTGAATGGAAAC # Left flank : TTAGCTGATATTCCGATTGTCAGAAGTCCACGCAACGGGTATATTAAAAAGATTAAACCTTGGGTGGGTAAAGATGGTAAATACACAACTTCTATCACTATTGTTTCTAAAAACCAATAACTACTAACCATGTTCGATTAAGTAATTGGACAAAAGTATTTACAGTCATTGCGAGCGAAGGGAAGCGATTCCTATGGAGCGCTTTGCGATCGCAACCATTAGAATTGCTTTATTTCACTTCGTTTCCTATGGCTAACGCCACGCAACGCTTACGCAATAACATTGTGTAATTAATTCTGCATCACTACTTATTACGTAATTTTTCCGAAGGTCAGGTAAAATGGCTGTAATGTTACTTTTTCGTTGGGAACTTCGGTCGCTTGTTGGGCAAAGGTTTCCGGCTTTTTTCCCGCTATCGGTCAGTGATTTTAACACTTTTTTTCCTGACCTTCGGAAACTGTCTCTGGACATCTTACTGGGTAAGGATCTAAAATTGAGGG # Right flank : CCGGGATACCTGCAAAATGGGACACGATGTAAAGTTTTGTAAACTTAATTTTTCAAACTATTGATTTACCGTTGTTTCAGCATCTATCTGAACTTAATTATTCAAATCAAAACATCCCAATCAAAAATCATTATTAATTCAGCAATTCCCTAGTTTTGATAACTGGGGATTTTTTGTATAAAATATACGAATAGTCAATGGTTTTTATTTCCATGAAAATCAAATTATTCATAATTTTATCAATTGTAACTTTTCCTCTAAGAATGGAAATAGCGATCGCAAAGCGCCCCATAGCGATCGCACAGCACTCCATAGCGATCGCAAATCGATCCATAGAAATCGCTCAACCTACCCAACCCCGACAAACACCGATACAAACCACGACAAAACCCGTCAATAAAAACCCGACAATCCCGACAACAAAGCCTGTAACGCCTGTAGATGATAGCGGTGAGACTCCGACAGCAGAAGAAACAGAAGAACCAGTAGAACCAGAAGAA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCACTCGCTGGGGACGTTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 260-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZYY01000315.1 Aphanizomenon flos-aquae NIES-81 contig00315, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================================== ================== 259 29 100.0 48 ............................. TGGAAACCAGCTACACACCAATCAGATTTACCTCTCCAGTATTCTAGA 182 29 100.0 42 ............................. TGGAAACGTCTCTTTCTTTAACTGTTGGTAATGTGTTTGAGC 111 29 100.0 53 ............................. TGGAAACATCGCAGTATTCTTGGCACTAATCTGACTTCTTACAGAGGTGACAA 29 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================================== ================== 4 29 100.0 48 ATCGCTTCTTTTATAAGAAGTGGAATTAA # Left flank : TGGGT # Right flank : A # Questionable array : NO Score: 2.61 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.24, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGCTTCTTTTATAAGAAGTGGAATTAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.40,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-5.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //