Array 1 33-793 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJXL01000208.1 Meiothermus hypogaeus NBRC 106114 sequence208, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 33 29 100.0 32 ............................. TCTTAGGCGTGCTGGCATCTGCCCCAGATGAT 94 29 100.0 32 ............................. GTGGTTGACCGCGAGGAGGGGTTCAAACTCTT 155 29 100.0 32 ............................. CCGCAGCCCCGGGAATTGGGTGCGCGTCGTTT 216 29 100.0 32 ............................. GCAGAAGTGCCGTCTACCGTGATGCTGATGGT 277 29 100.0 32 ............................. CGCTCGAGGAGGAGCACCAGGAGCACCTAAAC 338 29 100.0 33 ............................. TTGTAGGGACGGGTCATTTTCGCCTGTGATTGC 400 29 100.0 32 ............................. GGCAGGGTTCATGTCAAGTTCCCTACGCAGTG 461 29 100.0 32 ............................. CTCAGCGCTTTATTCAACCATCGGCTGCGCTT 522 29 100.0 32 ............................. GGATGGTTGCCGGAGTTTCCCATCGCTCGCTT 583 29 96.6 32 ............................T GAGACTTTCCAGCAACAAATGCAGGCGGAGGC 644 29 100.0 31 ............................. GCGGGCCCTAATGTGGCTTAGCCATCTCCTC 704 29 100.0 32 ............................. TGCGGCTCGGGGGTAGGGCCGCTTACCGGCTG 765 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 13 29 99.7 32 GTATTCCCCACACGCGCGGGGATGAACCG # Left flank : CCCGAAGAGCCTCTGGTAGTTACAGGTGGGCCG # Right flank : GTCAGCGGGCCCACCACCGATACACGCCATAGCTTCAAAAGGATGCTGTGTGGGGTATTCGTGGGAGGCCTCTATGTCAATACCCGGCACAACGCCCGGTAGACGTCCACGTCCCGGGTCACCTGGCGCTTGGTGGCCCGGGTAGCCTGCCGCCGGGCCATGCCCTCGCACATCTTTCGGGCATGATAGGCCTGGGTACGGGGGTCAAGTCGTAAGCGGTTCCAGGTGATGAGCTCAATCACCCGGTTCAGGCGACGGTTACCGCCTGGGTTAACCTTGACCCGCTGGCGTTGACCGGAGGAGTGGTCTAAGGAGGCGGTAGCTGCATAGGCTGCAAAGGCGGCCTCGTCGCGGAAACGCTCTAGATACTGCACCTCGCCGATCAGGACGGCGGCGCTCACCAACCCGATGCCGGTCTCGGTCTGCAAGCCCCGGTAAGGCTCCAACAGGGTTTGCATGGACTGCTCCAGGGCCGCAATCTCCTGGCTGAGGCTCTGCAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACACGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCTCGCGCGGGGATGAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.00,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 978-34 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJXL01000220.1 Meiothermus hypogaeus NBRC 106114 sequence220, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 977 29 100.0 32 ............................. CCGGGCTATCCCCGCTTCAAAGGCCGGGGCTG 916 29 100.0 32 ............................. CCCGTACATGCGAACCCAGGCGGCATTGTAGA 855 29 100.0 32 ............................. TGCGGGCGCTGGCCACCAGGCTCAACCTCGAG 794 29 100.0 33 ............................. GGTGGACAACCCGCATTATCTAATCTCCAGTTC 732 29 100.0 32 ............................. GCGGCTACCTCGAGCTTGCGGCTGCCGATTGG 671 29 100.0 32 ............................. CCCAGGACCTCACCCCGCTCCAACTACGTCTT 610 29 100.0 31 ............................. TCGGTGCTCGACCAGGTGGGCTTTATCGAGC 550 29 100.0 32 ............................. AAAGAGCAGGTAGCGGACGGGAACGAAGCCAA 489 29 100.0 31 ............................. GTCAGTCGGCAACTGGTAGACCTGGCGGCCC 429 29 100.0 32 ............................. TGTGGGCGCAAGAACTTTTGGCTTACTTGCGC 368 29 96.6 31 ............................C GGCTTCTAACCACATGGTGGCGTTCATCGAA 308 29 100.0 32 ............................. AGGCTGCATTTGAAGGTGGTGCTGAATACAAA 247 29 100.0 32 ............................. GTTTAATCCTTTTTGAATCTCACTCCAAGCAC 186 29 100.0 33 ............................. TGTTACAGTTACACCCCCTGAAAAACACTGTGC 124 29 100.0 33 ............................. CTACCGTTTTCATAGATAGCTATACCGACATGC 62 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 16 29 99.6 32 GTATTCCCCACACGCGCGGGGATGAACCG # Left flank : GCCCCCGGTGAGCTATGGGATGTGGACGGTACGGTTCCTGGTGGGGTGGCCTACGGCGAACTCGAGCAAGACGACCCCAACTAAACTATGGTCGTGATTGTGCTGGAAAACGTACCCAAGCGTCTGCGCGGCGAGCTATCGCGCTGGATGTTGGAAGTGAGCACCGGTGTTTTTGTGGGGAGCATGTCGGCATTGGTGCGGGATCTGCTATGGGAAAAGTGTAAGGAGAAAAAGACGGTAGGGCGTTGTTGTCTGATGTACCGTACCAGCAACGAGCAAGGTTTTACAATCCGAACCCATGGCGACACCACCCGCACCCTGGTAGACTTTGATGGCATAACACTGGTAGCTGTGCAAAACGCCGAATGGCAGCGCATCCATGCCAAACGGAAAAAGTCTAAGGCGACCGAGAACCTTGAAAAAGAAAATCCCAACCCATCAGCTCGGGATTCCGACACTTCAGACGGGGTAAGTGGCTGAATTTGCTGTTAGGATCAAGT # Right flank : AGATGGTTGGTGTTTTCAGGTGTATTGACAAGCC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACACGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCTCGCGCGGGGATGAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.20,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2448-33 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJXL01000226.1 Meiothermus hypogaeus NBRC 106114 sequence226, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 2447 29 100.0 32 ............................. GCCTGAGCGTAACAGCAGTGGCTGCTGAGGTG 2386 29 100.0 33 ............................. AAGACCGAGCGTGGCGAAAATAGGCCCGGTTAC 2324 29 100.0 32 ............................. CGAGCTGAGGATCTGGTCGCTCGATCGCGGCT 2263 29 100.0 33 ............................. GAGAGACCATGCAAGAAGCCTTTGAACGAATCA 2201 29 100.0 32 ............................. CGACTGTAAGCGCTGTGATACCCCCAATAACC 2140 29 100.0 32 ............................. CTCGTTGGCAACGGTAGTCAGGGCTTTGTGCA 2079 29 100.0 32 ............................. CCTGACCACTTACCTTGAGGAGTGGAAGGAGC 2018 29 100.0 32 ............................. CCCGGCAGCGTGCAGCGCACCATTTTGGAAGC 1957 29 100.0 32 ............................. GCCGCCGGATAACGGCGGCCTGGAAAGCTGCT 1896 29 100.0 32 ............................. TAGTCCGCAGGCCCAGAGCACCCGCAGGCTAC 1835 29 100.0 33 ............................. CCCTCCTCAGGGGTTTCGCCCCACCCCCCGCAC 1773 29 100.0 32 ............................. GGCGACCTCAAAGCCGAGGGAAGCCTGACCAC 1712 29 100.0 32 ............................. GAGGGGCGGCGCTTTCCTTTCCGCAATCCCCA 1651 29 100.0 31 ............................. CGTCGCCAGGCGAAGGCGGCCCGCCCGCTGC 1591 29 100.0 32 ............................. GAGGAATGGCAGGCCCTCGAGGAGCGAGCAAG 1530 29 100.0 32 ............................. TCCACGCGCGTTTGCCTAGCACGCTTCAGCGC 1469 29 100.0 32 ............................. CACGTGGAGTGGGGGTGTATTGCTATGGTGGT 1408 29 100.0 32 ............................. TGAGCGCGTCACAACCCGTGGTGGTGGTGTGT 1347 29 100.0 34 ............................. GGTGGGTGCTACGCCGTGAAAAGCCGTCCGAGGG 1284 29 100.0 33 ............................. AGACGTGATAATAGGTGCAGCCGACTGAGCAGC 1222 29 100.0 32 ............................. GCACCTGGTTTATTTCATGCTGAAGCGTAACA 1161 29 100.0 32 ............................. AGTGGGGCTGGCCGGGCTTGCGGGCGGTCTGG 1100 29 100.0 32 ............................. CCTGCTTAATCAGGAGGTGCAGCCATGAAACC 1039 29 100.0 32 ............................. CGCTGGCCGCTGCCCCTGGTGCGGGGCGACCA 978 29 100.0 33 ............................. TCCATGGACGCTCCGGCAGATTGTTGAGGTGGC 916 29 100.0 32 ............................. CAGTACCGCGAGCCGGGCCGGCCGGGCCCCAG 855 29 100.0 32 ............................. GTTCGACAATCATGCTGTCGTCGAACACGTCA 794 29 100.0 32 ............................. TGCCGTTGGGACTTTCAGCCCAGACGGTAGCG 733 29 100.0 32 ............................. GGGGAAACACATGGATATGGATTCCGAGCGAT 672 29 100.0 32 ............................. CCCAGCGAGAAGCGATGCAAGATGTGGTGAAT 611 29 100.0 32 ............................. GATACCGAGCGAGCGGCGAACAGGGCGTACTG 550 29 100.0 32 ............................. GCAGCCCACACGCTACCTTTGAATATCGCCTT 489 29 100.0 32 ............................. GGAGGCACAGCCAGAGCCGATAACTGGCCTGC 428 29 100.0 31 ............................. GCAAACCACAGTTTGGGAAAGCGGAAGAGTA 368 29 100.0 33 ............................. GGTATATACCCCACCGTTGTCGTTGAGCGCGAC 306 29 100.0 32 ............................. CCTCGAGCCAGCGCTTCGATGTGGGATACCTG 245 29 100.0 32 ............................. CGGCTCAAGCCCAGGGCTGCGGCGGTGAACCG 184 29 100.0 32 ............................. TCGAGACCTGGGGCTGGTTGTCGAACCTGTGG 123 29 100.0 33 ............................. CTCCTGTCTGCCGGGATGCGGGCAGGTTCGGGT 61 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================== ================== 40 29 100.0 32 GTATTCCCCACACGCGCGGGGATGAACCG # Left flank : AGGTCTTTCTCCACCTTAGCTAGTGCATCCA # Right flank : GCGTTCTGTGGCAAACATAGCTTCCCGCTGGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACACGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCTCGCGCGGGGATGAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.20,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [21.7-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2812-37 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJXL01000042.1 Meiothermus hypogaeus NBRC 106114 sequence042, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 2811 37 100.0 35 ..................................... ACTTCATTCCAGGTTACGGTTTCAGTTTTCATATC 2739 37 100.0 35 ..................................... TCGATAACGCGGAGACGCCCCGCGTTGTTCATCTC 2667 37 100.0 35 ..................................... CCGGCGGGATGAGGGGGAGCAGCGATGAATCCCCT 2595 37 100.0 36 ..................................... GTGCGGCTCAAATTGACCACCGCCACCAACCCCAAC 2522 37 100.0 34 ..................................... TCATCAGGGGGTCGGGGCGATTCATGGTTGTTCC 2451 37 100.0 35 ..................................... GAGGACGAGCGCAGCTCGAACAGCGTGACCAGCCG 2379 37 100.0 35 ..................................... CTACGCCGAAGAGGTCATCTGGGCTCAAGGCCCGC 2307 37 100.0 35 ..................................... TTCCATGCCCGGCTTGAGAAGGCCCTACAGATCGC 2235 37 100.0 34 ..................................... CCCAACGCCAGCGCGTATATGCCCGCTCTTCCTC 2164 37 100.0 36 ..................................... CTCGACAGGGTTGCCACGATCTCCTCGTTGCCGCTC 2091 37 100.0 35 ..................................... TCGGTGCGAGAGATGGCCGAAAGCGCCGGATCCAG 2019 37 100.0 34 ..................................... CCCCAGCGGTACCAGCCCCAAGTTTTCCAGTTGC 1948 37 100.0 35 ..................................... GGGTAGTATCTGGCCCCACCGACTTCCGTTCCCAA 1876 37 100.0 34 ..................................... CCAACGACTTTGTAGGCGCTGACTCCCAACCCTA 1805 37 100.0 35 ..................................... TGAACGTGGGTCTGAATCTGAACCGTTGGCCCCTG 1733 37 100.0 35 ..................................... CCTCAACCCAAGTTGGAGGCAGGACGCAGTCCTGG 1661 37 100.0 35 ..................................... AAGCCATTGCGCGGGCGGTGGGGGAGGGCATCATA 1589 37 100.0 34 ..................................... CACCGAGCAGGCGAGCCTCAAGCTCGAGCAGTCG 1518 37 100.0 36 ..................................... GAAATCCCTTGATTGTTGACGAGCTGCGCTGGGAAA 1445 37 100.0 34 ..................................... TTGGAGATTCGAACCGAGTTGCTAGTGCATGCCG 1374 37 100.0 35 ..................................... ATGTATGTCCTCCTCGCGGCTGTGGCGGCCTGCTG 1302 37 100.0 35 ..................................... GCTAATCTGATATTTACGCACTTTAGCCTGTGTAG 1230 37 100.0 37 ..................................... CAGGATTTTAGGCCCACATGTGCGGCTAAACCAGATG 1156 37 100.0 35 ..................................... GTGGGAGTAGGCGCGGCCATCCAAAATGTTTACGC 1084 37 100.0 35 ..................................... CATACCGCCGAGCCGAAACGCCCCGAATTCAACGA 1012 37 100.0 36 ..................................... ACCCCCTCGGGCAACAGATAGACCGGCTTGGCCCCC 939 37 100.0 36 ..................................... CGACCACCCCGACAACCCCCATGCACGTTGGGGCAA 866 37 100.0 35 ..................................... CCCGTCGCGATGCCGTTGTAGCTTTGAAACGCGGG 794 37 100.0 35 ..................................... CTAGCGGGTAATCTAGGACGACAGGAGGTAAGCAT 722 37 100.0 35 ..................................... CTAGGGGCTAGGGGCTAGGCTAGGGCTAAGCGGAT 650 37 100.0 34 ..................................... GTTGCGCCAGCGCCAGCACTAGGCATTGCCATAG 579 37 100.0 38 ..................................... GCTGGGGAGACATCGACGAGGCCTGGAGGGAGCAGCGC 504 37 100.0 36 ..................................... TCACCGAACGCCACATCCAGCGCCAGATTGTGGACT 431 37 100.0 35 ..................................... TTCGTCTCCCCGGCATACCGCCATTACAACCTCAT 359 37 100.0 35 ..................................... GGCGGCGAGGTGGTGCGCCGCCGGGAGGATGGCAT 287 37 100.0 33 ..................................... CCTGAGTCCATGCTCGAGCACTACTCGGCTCTG 217 37 100.0 36 ..................................... CCTGCTCCTCGTGGTCTACCCCGTATGCTCGGGGCG 144 37 100.0 34 ..................................... ATCCCCGTAAAACTCCACCGACCCGTCGGGGTGG 73 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 39 37 100.0 35 GTTGCACTCGCGCGAAAGCTCGAGTGAGGATTGAAAC # Left flank : TGGTCACCTACGATGTAAACGTTACGTCTGAGGACGGCCAGGCCCGGCTGGCCCGGGTAGCTAAAGTCTGCAAGAACTTTGGTCAGCGGGTGCAGATGTCGGTCTTTGAGTGCAGGGTTTCGCGGGCCCAGCTCGAGGACATGGAAGCCAAGCTGCTCAAAATTATCGAGCCCGACAAGGACAGCCTGCGCATCTACACCCTTCAGGGCGGCAGAGAGAAATGCCTGCGCGTCCATGGCCAGGACAAGTACACCGACTTCGACGACCCGCTGGTGCTCTAACCCCTCCAGGGTTGGGCAACCTACCTGGCGCTTGCTTAGCGCGAACCCCAAGCAAGCGCCAAAACCCAGGGGGGTTCGCGCAAGCCGAGAAATCGGCTAGGGGACATTGAAAACCCGTATTTCCTTCACCTTCCCCCACCCTGCGTCGGAGGCCTTTTTGCGGGGGTTCGCGCAAACAGCCCCTTGAACCCCGTGCAGCACGCACGCTAGAATGAGGCC # Right flank : CCTTGAAACCATAGCCGCGCAGGATGCCTTCCTCGAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACTCGCGCGAAAGCTCGAGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.50,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [26.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : NA // Array 1 22331-21644 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJXL01000056.1 Meiothermus hypogaeus NBRC 106114 sequence056, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 22330 37 100.0 35 ..................................... AACGGTCATCTCAGTCAATCTATCTGAGAAAACAG 22258 37 100.0 36 ..................................... TTGGCGAATGGTCTTTACCTTGTAGGGGTTGCCCGC 22185 37 100.0 36 ..................................... GCAGGTTTTTCATTATTTGATGTTGACTTTAGCCAG 22112 37 100.0 36 ..................................... CCTGCCCTTCACCTCCACGGCTAACTCGGCCTGGCC 22039 37 100.0 35 ..................................... TGCCATAGCTGGTTTTGCTGGTGCTGGTGCGCCAG 21967 37 100.0 36 ..................................... GGTGAATATGCTGAAACCGTTTTTGTATATGCAAAG 21894 37 100.0 35 ..................................... CGCCATGCGCTCGAACAGGCTTTCGGCCCCGCCTA 21822 37 100.0 34 ..................................... CGCGTGCGCCCGTGCGCGTGCGTGTGTGTGCGTG 21751 37 100.0 34 ..................................... TTGAGCATTTCGATAATCTTTTCCATTGCTTTGT 21680 37 89.2 0 .............................CGA....G | ========== ====== ====== ====== ===================================== ==================================== ================== 10 37 98.9 35 GTTGCACTCGCGCGAAAGCTCGAGTGAGGATTGAAAC # Left flank : GGAAGCCCCCGAAAAATCCCATCCCCAACCATTG # Right flank : CCTCTCCCCCCGCGTCACGTGCGTGGCCTCCAGGTCGAACCCCCGCCCCTTCAAGGCCCCAAAGAGCCGCTCTATCCCCCACCTGAGCCCGTACACCTCTAGCACCCGGTGAGGGTCCAGGTCCGTGGCCACAATCAGCCACTCCCGGACCCCAAGGCGCAGCCCCACCACCCACATGCGCCGGCCGTAGACCCAGTACCGCCGCTTAGACACCCGGCTCTCTCCCACCCTAAGGGAGGCAAAAAGCTCCCAGGCCCGAGGGCCTGAGCCAGGCCGCCACATTCGGGTGTTGGCCTTGACCCGGATGCACCGGGGGTTCCGTCAGACGGAAGTTTCCAGAACCGTAAAATATTTTCATGAAGCGAAAAGCTTGGGACGTGTACAGCGAGGTTCTTAAGGCGGCCCGAGATCTGGGCCTCGAGGTTGAGGAGCAAGAGGTGGCAAAGGCCCTCCTCGCCTGGCCCAAGGAGCGCTTCCACGTCTTCGCCGCCCGGATGGGC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACTCGCGCGAAAGCTCGAGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.50,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [25.0-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : NA // Array 1 364-36 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJXL01000057.1 Meiothermus hypogaeus NBRC 106114 sequence057, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 363 35 100.0 38 ................................... CGGGTTATCGTTTTTGCCTGCAAGCGCCAGAATACTAT 290 35 100.0 37 ................................... AACACTCGACGGATGGACCCCTTGGCCACAACCCCGT 218 35 100.0 40 ................................... CTGGGTAGGGGTCAGGTTTCGGGCATAAATACGATCAAGG 143 35 100.0 38 ................................... TCTCCCCATACCCACCCCTCGCGGGGCAGGATGCCTTG 70 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================== ================== 5 35 100.0 38 GTCGCAAAACCTTAGCCCCGAAAGGGGATTGCAAC # Left flank : GCATAGCGTTACGCAGTAGGGGTACTGGGCTTCTATTGTGTGAATGGCTGGTGCCGGCCCTCCTAGCAGCAACACCTCGCAAGACCACCCGAATCTCCTCGAGGCCCACGCCATGACCTACCCCCCCGTTACAACAGGCGTTATCCACCCTTTAGCCCCCACAAATGCTGTCGCAACCGCACCCCCTTGTTGCCCAAAGCGCACAAAAACGCCCATCGCCACACAATGGAAGCAACTTCCAAAAATGACCCATTATGTTTTGCACAAAATGCTATAATGCACATGTCGAGTTTTTCGACGGTGCTTCTTGAAAACCAGAATGTGCGATGAAAAAGGCAAACCCGCGCTATAAAAAATCCAAAAGTGCGGATTTGTAAGCATTCATCGCAAAAACGGCCATTTTCTACTCAGTTATCCACAGGCACCTGTGGATAACTCGCTTTTCTCATAAATACCCCCCTCCAGACCCCTGTACAGGACGAGGTTTAACGGGGTATGCT # Right flank : CAGGAAAACGGCACGGTGCCTAAACGCACGCTCCGA # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAAAACCTTAGCCCCGAAAGGGGATTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [23.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 2 17215-16382 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJXL01000057.1 Meiothermus hypogaeus NBRC 106114 sequence057, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================== ================== 17214 35 100.0 36 ................................... GCCAGCTTTACGTGCCAGATGAAGCGGACGCATTTT 17143 35 100.0 36 ................................... TGGGTTTCCCCAGGCAGCCCAAAGGCCCGCACAAAC 17072 35 100.0 35 ................................... AACTCTCTGAGTTCCTCGGGGGTGAACTTGCACTT 17002 35 100.0 38 ................................... AGCGGATAGCGGCCATAAAAGCCGGAGCTGAGGATGAA 16929 35 100.0 42 ................................... ATTGCTTATTCCCGATTGCCTATTGCTGATTCAGTATCTCAC 16852 35 100.0 39 ................................... CGAGAACTACCGGCGTCACCTGCCTTACCAAGTAGTACT 16778 35 100.0 38 ................................... GCGGTCGCCGCGCGAGAGCACGATGTGCACAGGGTGGA 16705 35 100.0 37 ................................... TTGAACTCGCGAACCCTTGCCTTGGCCTGAGCACTGT 16633 35 100.0 38 ................................... TCGGGTAGCCTCGGCCCGCGATATTGCGCAACTACCAG 16560 35 100.0 36 ................................... TGGAAAGCGAAGGCCCTTTTACCGCGAACAACCAGA 16489 35 100.0 38 ................................... TCGGGCCAGATTGCCTATGCCGATTGCCTGGAAAATAT 16416 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================== ================== 12 35 100.0 38 GTCGCAAAACCTTAGCCCCGAAAGGGGATTGCAAC # Left flank : CCACCATCCCGGCAGGCAAACATTAGGTTAGTCGGGCTTGGGACGCTTGTCAAGGAGACCTTCCCAGTGCCGGTGCAGCCCCGACAAAACCCCTCGCCCCACCCCAAGCCGCACCCGGCCAGCCCCCGTTACAATAGGCGTTATCCACCCTTTAGCCCCCACAAATGCTGTCGCAACCGCACCCCCTTGTTGCCCAAAGCGCACAAAAACGCCCATTGCCACACAATGGAAGCAACTTCCAAAAATGACCCATTATGTTTTGCGCAAAATGCTATAATGCACATGTCGAGCTTTTCGACGGTGCTTCTTGAAAACCAGAACGTGCGATGAAAAAGGCAAACCTGCGCTATAAAAAATCCAAAAGTGCGGATTTGTAAGCATTCATCGCAAAAACTGCCATTTTCTACGCAGTTATCCACAGGCACCTGTGGATAACTCGCTTTTCTCATAAATACCCCCCTCCAGACCCCTGTACAGGACGAGGTTTAACGGGGTATGCT # Right flank : TAGGCTTCCTTACGATGTCTGGGTTTGCTTATCAAGCTCGAAGGATAGGGTTGTTTTCTGACCTTTGAGGCGGGTTTTTTGGTATATCTGTGGTATGGAAACCCAGACCCACAAAGTGCTCATCCTGACCGTGGGCCAGACCCTCGAGCCCCTGGAGTTCTCCCTCAGCGAACACACCCCGGAGGGGGTAATTTTTGTGGCCAGCCAGGGGAGCCAGCCGGTAGCGGGGGAGCTGGTGCGGCGCTATGGCGATGCACTGCGCTTTCATACCCTGCTTCTGGACGACCCCGAGGACATGGGCGAAATTTTCCGCAAGGCACGGGAGGCCCTGCGTAAGGCCCTGGAATGGGAGGCCCGGGTGATTGTTGCCGACATTACCGGTGGCACCAAGACCATGGCGGCGGGTGCGGTGCTGGCGCTTAGTGGGCAGGGGGTCACCTTCAGCTACGTGGGCGGTGCCAAGCGCGACGACAAGGGGCGGGTGGTGAGCGGCTCCGAGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAAAACCTTAGCCCCGAAAGGGGATTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 1 15630-17611 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJXL01000055.1 Meiothermus hypogaeus NBRC 106114 sequence055, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 15630 37 100.0 36 ..................................... CTTATCTACCCACTCACTCAGCAACAGATGGTAATG 15703 37 100.0 34 ..................................... CAATGTCGAGTGTGATGGTTACCTCTCCAAGCTC 15774 37 100.0 35 ..................................... ATGCGGGCACGGACTGGCGGGCTCTGGTCACACTG 15846 37 100.0 37 ..................................... CTTAGACAGATAAGCTACAGCCCCATCTCGGGAGCGA 15920 37 100.0 36 ..................................... ACCGGCGTGACCCTCTGCTGAGTCACGCCTATGACA 15993 37 100.0 36 ..................................... CTTTCCAACCCCGAGACAGCAGCGTCAAGGCCGCCC 16066 37 100.0 35 ..................................... CGAAGTGCGGGGGTGGCGGTATGCCTAATCCCCAC 16138 37 100.0 36 ..................................... GTTCTAGCGCCAGTGCTAGTGCGCCAGTAGGGCTAG 16211 37 100.0 36 ..................................... GAGGTGCTCCGGGAGCTTCCCGGCCTGGACCTGAGC 16284 37 100.0 35 ..................................... CGGGGTAACGGTGTCTCTTTTCCCCGCCACAGCGT 16356 37 100.0 35 ..................................... TTGAAAAGCTTGGAAGAAGCCCTCAACGAACTTGC 16428 37 100.0 34 ..................................... ACGATCTCGTTGGGGCTCAGGAGGGTGGCCACGC 16499 37 100.0 34 ..................................... ATTTTCGTTTTCATCGTCTACGTGTAGCTCCTGC 16570 37 100.0 34 ..................................... GAGCCAGCACCGCTTGCCCGCTCCGGGTTCGCGC 16641 37 100.0 36 ..................................... TCGGCTCGGCAGTGGCCACAGCCACAGCGGTGCTGG 16714 37 100.0 36 ..................................... TTGATGTTGGCGCACCTCTATGCCCTAACCAGGCGT 16787 37 100.0 32 ..................................... ATCGGGGGGCAATGTTCGCACGGCGTCATTGT 16856 37 100.0 35 ..................................... TTCGTGGTCGCGCTCAGCCAACATCCTGAGCGTGG 16928 37 100.0 34 ..................................... GCCGCCCATGAGCACATAATCGAGCACAGGGTGC 16999 37 97.3 36 ..........C.......................... TCATTGACGAAGCTGAAATGCACATGCCCACCCAGG 17072 37 97.3 31 ..........C.......................... CTCCGCACCTGGAAAATCCCCAACATCCCAT 17140 37 97.3 35 ..........C.......................... GTCTACTTTGAAGCCTGCCCAAGCACGCTTGTTGA 17212 37 97.3 35 ..........C.......................... CCAGAGGCTGGCTGGGCCTCTATCAGGCGCAGGAG 17284 37 100.0 35 ..................................... CCTCGTTCGGAACCTGGCTTGCGCCGCCGAATCCG 17356 37 100.0 36 ..................................... GCCGCCATGTTCGAGGATTCGGTACACGTCGAAGGC 17429 37 100.0 36 ..................................... TCACTCAGGACTACAAGTCCTACCGCTGACGCCTGC 17502 37 100.0 36 ..................................... GATGTATTCGCCCACCCGCTTGTTGAAAAAGATTGC 17575 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 28 37 99.6 35 GTTGCACTCGGGCGAAAGCTCGAGTGAGGATTGAAAC # Left flank : TTTGGATAGCGGCCTAGACACCTCGATATCTTACCGCTCCGATGCAGCCAAGGAAGCAAAAAATGCCCCTGGCCCCTACCCTCCGCTACCCAGCTTGGGCTGGTCACCGTCAGCAAAGGGGCTGGGTTGAACCGGCTTTGCTGCCAGTGGTGCTGTCACAAGCAACAAAAGCAGCAAAACCATAGCTCCAACCCAAGAGATTTGCTTAAAGCCGATAGCCTCGATGCCGGGGTTATGAAGTTTCTTTTTCATACCCCCAGCCTTGGGCCGAGGCCTGCACGGTTTGTGCAGGGTGGTGTAACCTATGCCCTAAGAATCTGCGCGAACCCCAAGCAAGCACCAAAACCCAGGGGGGTTCGCGCAAGCCGAGAAATCGGCTAGGGGACATTGAAAACTCGTTTTTTCTTCACCTTCCCCCACCCTGCGTCGGAGGCCTTTTTGCGGGGGTTCGCGCAAACGGCCCCTTGAACCCTGTCCAGCACGCACGCTAGAATGAGGCC # Right flank : CCAGCGGATCTTCTTCTCGCCATCCTTTTCGTACTGTTGCACTCGGGCGAAAGCTCGAGCACACAAAAAGTAACGCTTGTGGGCTAGGGAGGGGAACCCACAAGCGCTTCTTTACCCCCACTAGGTGGGTTGACTCATTTCTACAGCATGTAAATGCTGTTGAATAGGGAAAAAAGTCCTGCTTAGGGCTTTTGTAGCGTCTGGGCCAGGGCTAACTGCCCCAGGGCTATTCCACCATCGCCCGGTGGTACCGCTCGATTCCAGCAGACCTCTAGACCCTGCGCCTGTAGTCCTGCCAAGGCTAGGCCGTGAAGCAGGCGATTTTGCCACACCCCCCCTGAAAGAACAACGGTGGAGTAAACATAGCGCTTGCGCAAGGTACGCGCGGCGTCTACTACGGAGGTGGCCAAAGCAGCGTGAAACTGCCAGGCAACCTGTTCTTTTGGAGCACCTTTCTTCAGATCAAGGAGGAGGCCCTCGAGCAAGGGTCGATAGTCCCA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACTCGGGCGAAAGCTCGAGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.10,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : NA // Array 1 5883-5325 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJXL01000073.1 Meiothermus hypogaeus NBRC 106114 sequence073, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================== ================== 5882 35 100.0 36 ................................... AGGGGCGCTGGCTGGTGCCCCAGCAGGCGGATTACT 5811 35 100.0 40 ................................... TGGAGTAGGAAATGGCTTTGCGACGGGCCAGTTCTGCCGA 5736 35 100.0 40 ................................... GGGATTTCGCGCAATTCCTCGGCGGTAAAATGGCACTTTT 5661 35 100.0 42 ................................... CCTGGATTGCGGTGGTAAAGAGCCTTGCCTTGTGGTCGTCGA 5584 35 100.0 42 ................................... TTAGCCAAACGGCTAAGGACACGACCATCGGTAGCTGGGTTC 5507 35 100.0 41 ................................... TGCGCTGCCCGTACCACGCTCGCCAATCTGGGGAAAACCGC 5431 35 100.0 37 ................................... AACAACACATCCAACTGCGAGCGACGCGCACCCGCCA 5359 35 88.6 0 .............................A.GT.G | ========== ====== ====== ====== =================================== ========================================== ================== 8 35 98.6 40 GTCGCAAAACCTTAGCCCCGAAAGGGGATTGCAAC # Left flank : AGCTACTGCAAAAGAAAGCGGAGCTCTCCCAGGACAGCATCCGCATCTACCCCATTGGGGGTACGGTAGAGGTACTGGGTACGGGCCGAATCATCGAAGACCCCGACTTCCTGATTCTCTAACCTGCGTTAAGCAAACCGTTACGCAGCCCCCAACCCCCAAAAAACCCGTCGCAACCGCACCCCCTTGTTGCCCAAAGCGCACAAAAGCGCCCATTGCCACACAATGGAAGCAACTTCCAAAAATGACCCATTATGTTTTGCGCAAAATGCTATAATGCACATGTCGAGCTTTTCGACGGTGCTTCTTGAAAACCAGAACGTGCGATGAAAAAGGCAAACCCGCGCTATAAAAAATCCAAAAGTGCGGATTTGTAAGCATTCATCGCAAAAACGGCCATTTTCTACTCAGTTATCCACAGGCACCTGTGGATAACTCGCTTTTCTCATAAATACCCCCCTCCAGACCCCTGTACAGGACAAGGTTTAACGGGGTATGCT # Right flank : CACAAACCCCCGGTGTGGGCCGGGGGTTTTGTTGTGCTGGGACTATCGGCTTACTCTAAAACTCTTCGTCCCACTCCACGATGGTCTCGCTGGTCAGGCCGGGGTTGGGTTTGGCGGCGGTGCTTGCTGCGGTAGCGGCGGCTGCGGTTTGAGGAACGGTGGGGTTGCGTGAGCGCCGCAGAGGTGTGCGCTGGTTTTGTAGCAGGCCAAACTGGGCGGCGATGCCCCGCAGGCCAATGGTGGCAAAAATAATCACCAAAAACACCGTAAGTCCCCAGAACAACTGCGCTACCAGGTTTTGCTGGATGGAAAGGTTGGTGAGGACACCCAGGAAAGGCAACCGCCCGTAGCGAGAGTCGGAAAGAATAGAACCGATGTAAGAAAGACCTTCCATCATGGCCGGGAGCAGCAGGAAGAAGAAGGCCAGCCCCAGGAAACGCCAGTACATATTGCGCCCCCCAAAGGTGAGGGTTAGCAGATACAGCGGAAAGAAGGCCAGC # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAAAACCTTAGCCCCGAAAGGGGATTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 2 18192-16244 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJXL01000073.1 Meiothermus hypogaeus NBRC 106114 sequence073, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================ ================== 18191 35 100.0 35 ................................... ACTCTGGAAAGAAGGGTTTCTGTGTAAGCCTTAAT 18121 35 100.0 40 ................................... GTCACGGGGGGGGTCCCTGCGCACGCGTGTCGGGGCTTGT 18046 35 100.0 36 ................................... TATTGCCTATTGCCTATTCATTCCATGCGCTCACCT 17975 35 100.0 40 ................................... CCGGAGCAACCGGAGCCGGAGCCTGAGCCTGAGCCTGAGC 17900 35 100.0 43 ................................... ATGGCCTGGATGTGGGGGTGCGCACGCTTAGCCCACAGCCGAG 17822 35 100.0 37 ................................... CAGTCCTTGTAAAGCAGTTGCCCATCTGGGCCAAAGA 17750 35 100.0 40 ................................... ACGAGATTTTCCGGCTTGTCTTGAGGCGGGTAGCCCAGCA 17675 35 100.0 36 ................................... GGTGTACTCGCACTCATCACAGGTCACGAATTCATC 17604 35 100.0 42 ................................... TGGGCGATATGGGACAGCGACCTTGAGGGCTTGACAGCACTT 17527 35 100.0 37 ................................... TCCAATAGGCGGTTCACCAAGCCTTCCTTATCGTCAA 17455 35 100.0 37 ................................... CCGCCACACGCAACCTTGAGGGCCTGATAAATCATCT 17383 35 100.0 38 ................................... GCCGAGAGCTGGGCAGGAGACCTTTTTGTTCGTAACAA 17310 35 100.0 39 ................................... GCCAGCCAGGACCCCACCGCGTCGTTTTCCACGTACACG 17236 35 100.0 40 ................................... TAGTCACCGATAGGACTGCTGTCACCTCCCTTACTTTGAG 17161 35 100.0 44 ................................... AGAACCACATGCCGTTTCGAGGCCAGACCGAGAAAGAGGGGTGG 17082 35 100.0 34 ................................... TCGTTCTGAACGAGAACCTGAACGAGAACCACAT 17013 35 100.0 42 ................................... TCAACTTTACCCCTAGCGGCCTCGAGGACACCAAGGACTTGA 16936 35 100.0 37 ................................... AAGGAGGAAGATGATGGATAGAATCGAAGTGCAGAAG 16864 35 100.0 40 ................................... GCCGAAAATCGTCATGGGGGATACTCATATCCCCCTGCAC 16789 35 100.0 36 ................................... ACCATTGACAGCGACCCCATCCTGCGCACCGCCCTC 16718 35 100.0 36 ................................... GAGTACCATTTGACGCTTTCTCGCTTGTATTTTCCG 16647 35 100.0 39 ................................... CTCGAGCAGCAAAAACTATTTCGACCACACCGGCGATGC 16573 35 100.0 39 ................................... GTGAAGAGGCTGAAATGGGTCGGGGTTTCCTTTTCCTTT 16499 35 100.0 39 ................................... ACAGGGTGGAGCTTGCCGTTTGCTTGAATCTTCCCTACC 16425 35 100.0 39 ................................... TCTACCTACGCGCTACGCGCGCGGTAGGCCCAAAGCCCT 16351 35 100.0 38 ................................... ACCAGCGATACCCTATCGCTCCTGTCGAATTTTCCGAA 16278 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ============================================ ================== 27 35 100.0 39 GTCGCAAAACCTTAGCCCCGAAAGGGGATTGCAAC # Left flank : ACCTCCACGGCCAGTTCGGGTTGGCCGTGGTCGGG # Right flank : TTGAGGTGCACAGGGTCTTGTGCGTGTTGAAAAATTCAACAATAGGAGCGCTTGGGCGGCATTGAGTGGCTCATGTGTTTGTGCTTTTGTTGGTGTGGCTTACCCCAAGGCCAAAAGCCGGGGTCTTCTGGGGTCTCGAGCATGAGCAACCTTACCGCTCTCGCCCAGCGGCAAGCCCTGCCCTGTTCTCAGAGTGTCAACTAGCAAATATAAAAGTAAACTGCTGTGACAAAATACCCAGCTAGTTGAAAGGTAAGTGCTATAAATGTTCCAGAATGGACTCAAACACTCCAAATAAACTTGCGCTGGCAGGGCTTCTGCACGACCTGGGCAAGGTTTACCAGCGGGCTTATTGGGGGCAGCCGCCTGAGGGCGTTTCGGACTGGAGCCACCCGGCCTATACCGAGTGGGCCATTCGCAAATGGAAACGGCTTTTTTCCGACAACGAATGGCTGGCCCTGACAGCAGCCCGCCACCACGAGGGCTGGCGGGAAAAGCCT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAAAACCTTAGCCCCGAAAGGGGATTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.74 Confidence: MEDIUM] # Array family : NA //