Array 1 96450-94163 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIOI01000045.1 Corynebacterium diphtheriae strain ST378-KZN-2015-45466 45466_contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 96449 29 100.0 32 ............................. GGTGCCGATCAGATTCACTTTGCCTTGCGCCT 96388 29 100.0 32 ............................. TGTAACGTCGCGTAATGGCAAAGTCTGGTACA 96327 29 100.0 32 ............................. GGCAAGGGCAACAAGTCGCGGGCTATCCCTTG 96266 29 96.6 32 ............................G AAGTCGAGGTTGAGGCTAAGCGGCTTGCTGCC 96205 29 96.6 32 ............................G CTGTAGGAATAGCCGGCAGGCGCTGAATACAG 96144 29 100.0 32 ............................. AGTCGTTGAAAGTCCGTCGTGTCGAGGTCCAT 96083 29 96.6 32 ............................G TCGATCCTTTACCTGCTGCCACGCCGACGACA 96022 29 96.6 32 ............................G AGATGAAAGACTGGACGAACGCCCAGCTAAAA 95961 29 96.6 32 ............................G TCGCCTGCGGAAACCACACCCTCAAAGCGCTA 95900 29 96.6 32 ............................G CACTACTTTCCCATGGTCGTAAAGGTATGTTG 95839 29 100.0 32 ............................. CATGATCACACTCACAACCACACTCACCCTCA 95778 29 100.0 32 ............................. CTGTCATCGGATTTTTTGAGTTTTACCAACCG 95717 29 100.0 32 ............................. GTCTCGCGCCGCGACGCTAAAGCGGTGGGCCG 95656 29 100.0 32 ............................. CATTCTTAGCGCTTGGCGTCGTGCGAGCTGGT 95595 29 100.0 32 ............................. ACGCGCCCTACGTCGGCTAATTCCTCAGCAGT 95534 29 100.0 32 ............................. GCTTATTAGGGCTTCCCCGTCAACAACGGACA 95473 29 96.6 32 ............................G ATTCGACTTCCACCGATCCGATGTTTGCTCAC 95412 29 96.6 32 ............................T CCTCTGCGATTCGTGTGCGTATGGAAACCCTG 95351 29 100.0 32 ............................. GTTGGCGAGGGCACCAGATACCAATGTCAAGC 95290 29 100.0 30 ............................. TCGTCCACAACGGCTAGGCTCTCGGTCTCG 95231 29 93.1 32 .....T......................T CATGTGAAGGTGATGGTCGAATGAGTGCCGGT G [95229] 95169 29 100.0 32 ............................. CACGGCGTAGTTGGTAGGGGATGGTTCTTCAT 95108 29 100.0 32 ............................. ACGAGCGGTGGTCTAGCGTTCCTCCCCGCAGT 95047 29 100.0 32 ............................. CAGGTAAATAGTCGAGTTATCCGGATTCCTCG 94986 29 96.6 33 ............................A CAAGGCCACTAGACGCGTATTGCCACAGTTCGA 94924 29 96.6 32 ............................G GAGACCTGATGGCTAAAGCTACTGTGACTTTT 94863 29 100.0 32 ............................. ATCTACACCACACGCCGCACACACGAAATGCA 94802 29 96.6 32 ............................G AAGCCGCGACGAAAAAACAATAAATAGAGCAC 94741 29 96.6 32 ............................G TTTTACGGATGATTCCGAGCGTCCCAGTCGTG 94680 29 100.0 32 ............................. TCTCCCCAGGTCAGATAGAGGCCATCAGGGAG 94619 29 96.6 33 ............................G CAGGCCCCCACGTCAACCCCTGCCACGTCGAAG 94557 29 100.0 32 ............................. TGTGACGTCGCGCAATGGCAAGGTCTGGTACA 94496 29 96.6 32 ............................G TTGGCTGGTGCATCTTCGAATGGGATGTAGTT 94435 29 96.6 32 ............................G CGTCGGATGTGTGCGAGGGCTTCTTTTTTGGT 94374 29 100.0 32 ............................. ACAGGCGGTTGCGCTGATTGGACTAGGAATCT 94313 29 100.0 32 ............................. CTCAAGGCCAGAGCTGGAAAAGCCGACGCCGG 94252 29 100.0 32 ............................. AGATCGTTAAACCAATCTGCTTGCTTTGCGGA 94191 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 38 29 98.5 32 GTTTTCCCCGCACCAGCGGGGATGAGCCC # Left flank : CTTACTTGGAAAGAAGCTGAGGCATTGGCTGGAAACACAGTGCGTCTGCCAGCCCAAATGACACGTAGAGATTCGGATTTTAATGCCGTTATTGATTCGCTCGAAGCACAAACACCACCAGAATGGCAACGATCCGGTTTGCTTAAAGGCCAAGTTGCGTTGTTTTTCGACGAAAGAGGAGAGGCTCGTTTAGGTCGATTCCTAGTGCGTTATACCAATGAACGTGGATTAGAGGTGGAGGTCTGCCCAAAGGAAGACGCATAAAAGGAAACCCCGCTGGTGCGGGGAAGTATGCCTATGTAAATCTTGTAGAGATATTAAAAAGGCTCATCCCTGATCGCAGGGAACAATGCCAGCCTATGGCTAGAAGAAAGGACTAAGCAAATTTGGGTGAATGGCTGATCCTAAAACAGTAGAAATAAAGATGAAGCAGAAAAATTGCTGAAACAAAGTTATATGTAATAAGCTCTAACTGGCTCTAAACGTGCAGCTTGATAAGT # Right flank : AGGGACTTTGAGAACTGGACCGCCGTGATTCCTTGCACTAGCAGGGTGGATGAATCTTTGTTGAAGAACGGGTTTTGGGATCTGTGTTTTCATTCAGAGAAATCAGTAAATGATGGGTCTACTAAAAAATTTTGAAAAAATTAACTTTTAATATCTATAAGGTGTATTCTGTAGAGAAAGTGCTTCCTAAGTTGGGAGTTTTAAAACAATCAGGAAGGAGTTGGTGGTGGCTTCGTTACTGGAGATCCGCTGGATTCTGGCTCTTGATACTCAAGGTAACCAGATTTCAGTTGGAATACGAGATATTTTCGCGGGGGAGGTGCAGGTTGCCTATATTCAGGGGGAGTCCCCAGCTCAAGACTATGCTGTGATGCGGCTTTTGCTGGGTATTTTCTGGCGTGCCCATTCCATGGATATCGACATGGACGTGGAACCTTTTGATTTTCTTGAATGGTTCAACAAGATGAGACGTCAGCTTGCTCGAAAAGGGAAAGATCAGG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.93, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACCAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //