Array 1 42516-43581 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXQL01000002.1 Salmonella enterica subsp. enterica serovar Montevideo strain BCW_4004 NODE_2_length_145702_cov_4.38483, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 42516 29 100.0 32 ............................. GGTCAGGCGATCATATTCGCGTGGATTGACGA 42577 29 100.0 32 ............................. GTTCAGGTTTCGCGTCATCTGACGTTGGTAAT 42638 29 100.0 32 ............................. TGTCCGCAATTGAGCGTTTCTCGGCTGATATC 42699 29 100.0 32 ............................. ATCCGAGTAGCTCAACTGGGGGATATCCCCAA 42760 29 100.0 32 ............................. GCGGTGCGGCAGGCGTTCCATGCCTCCATAGC 42821 29 100.0 32 ............................. TTCACCTTTCCCCACAATGTCAGAGGTTATTT 42882 29 100.0 32 ............................. ACCACTGTCCGCAATCTGTCGGCGAACTACCG 42943 29 100.0 32 ............................. GAGATCCCCCAGCGTGAATATCTGGGAGTGTC 43004 29 100.0 33 ............................. GCTGAATTGCTAAATAAAGCGGCCTGCGCTGCC 43066 29 100.0 32 ............................. ACGATTTATGAAATCCACCCGGTAAAAATGAA 43127 29 100.0 32 ............................. ATGATCCGTGAGGGGGTGGCAACGCACGCGTT 43188 29 100.0 32 ............................. GGACAGGTAACAGCGTGCTTGGTTCTGGTAAC 43249 29 100.0 32 ............................. AGTGAGTATCAACTCAACCTTATTGAAGATAT 43310 29 100.0 32 ............................. AAATAATTGCGCAGTTTTAAATGCCTGAATAT 43371 29 100.0 32 ............................. TCACAGTCACCGGTGATGACGGCGTCGTCGCT 43432 29 100.0 32 ............................. CGCAAATGAGCCAGGCGGACAGGCATTTTAAT 43493 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 43554 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCATAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAGTGCTTTATAAAGAACGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGTTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 59717-61210 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXQL01000002.1 Salmonella enterica subsp. enterica serovar Montevideo strain BCW_4004 NODE_2_length_145702_cov_4.38483, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 59717 29 100.0 32 ............................. GTCGCGGTGTGAGCGGAAAGCCTGGCGAACAG 59778 29 100.0 32 ............................. CGAGCTCGTCAGGGAGGGAAAGGTTATCCGGG 59839 29 100.0 32 ............................. GTAGGTAGCGCCCAATGGATGTTGGGGGAAAT 59900 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 59961 29 100.0 32 ............................. AAAACAACATTAATAAAAACCGGTTTAAGCGC 60022 29 100.0 32 ............................. GAGTTGTTTTTCTTGCGGAGCAGGACGGCGTA 60083 29 100.0 32 ............................. ATCCGATCCACATCAGCAGCCAGCTCTTTAAA 60144 29 100.0 32 ............................. ACCAAAGCTCGATATCAGTCAATTATGGCCAG 60205 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 60266 29 100.0 32 ............................. CCGGTCACGATTGTTCACCCCAAAAGCGGACA 60327 29 100.0 32 ............................. CACTCTGCGTAATGGCAAATTCCAATTCTTTC 60388 29 100.0 32 ............................. TTGACACAATAGCGAAATCAATTACTGAAAAG 60449 29 100.0 32 ............................. GACGCCAATTATACATTGGCTCTATATGAATT 60510 29 100.0 32 ............................. CTCCCGGCCGAGGCCGTGACGGTGAAACAGAA 60571 29 100.0 32 ............................. GTACAGAAAAAAGAGGCGTCGCATGTGGCGAT 60632 29 100.0 32 ............................. GGCCTCACAGCGGCGCCCGCTGGTCACGACCA 60693 29 100.0 32 ............................. CCCGCCGTCTGTCACACCTGTTATGTAATTGT 60754 29 100.0 32 ............................. TTATCCACCAGCAATCAGGGGCCGGATATACA 60815 29 100.0 32 ............................. CAAACAGTGCATAATTCGCAAAATTTGCGCTA 60876 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 60937 29 100.0 32 ............................. ACGAGCACTGCAACGGCGAACTGGCAATGGCA 60998 29 100.0 32 ............................. GAATTATTTAGTTGATCTGAAGAATTCAGGAA 61059 29 100.0 32 ............................. AACAGTGCAACCAGAAAGTATTAAAAAACCAA 61120 29 100.0 32 ............................. CAAAAGGCCGACGGTGTGTACACCTCTAAAAA 61181 29 93.1 0 A...........T................ | A [61207] ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGTGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTCCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //