Array 1 290637-287983 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYZA01000001.1 Salmonella enterica subsp. enterica serovar Kottbus strain 08-0447 NODE_1_length_737009_cov_3.80428, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 290636 29 100.0 32 ............................. TAATGCGCTCACTAAATGGATGGTTACCGGGA 290575 29 100.0 32 ............................. CATGGCTGAGGGGATGGCGCTTAAAGACTGGC 290514 29 100.0 32 ............................. CCAGTAAAGAGGCTGACGTTTGCAGTCTGCAT 290453 29 100.0 32 ............................. GGATCGACCAGTCGATGCACTCTGCCGCCGTT 290392 29 100.0 32 ............................. CTGGCATAGTCTTTTGCAATCGCGATAGCAGT 290331 29 100.0 32 ............................. CCATCAGGCCGGATGCCTTCTTTCGTATGCAC 290270 29 100.0 32 ............................. CAACCGAGCTTATCACGAAGCTAGGCGGCAAT 290209 29 100.0 32 ............................. TATGAGTATATTGATTTATTTGAGACTTCTGC 290148 29 100.0 32 ............................. CCGGTAAATTTAATGGCGGATTTAATTAAACC 290087 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 290026 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 289965 29 96.6 32 A............................ TTAATCCCCACGGCCAGGAGGTATTGATCAAC 289904 29 100.0 32 ............................. GTGCACGTTAGCCGCGTAGCTGAATTAGGTTG 289843 29 100.0 32 ............................. AGGCACGAAAAGCCATGGCCGCCGCAAAATCC 289782 29 100.0 32 ............................. CCATTAAGGCACTACTGGCTAAAAATGATGCC 289721 29 100.0 32 ............................. CGGCCGAACGTTACGGCGACGAGGTCGAGAAA 289660 29 100.0 32 ............................. GCGAACGGCGACGACGTGGCGCTGACCGAGGC 289599 29 100.0 32 ............................. GACTGGAATTAATTGGACCGTCTCTCACTGGT 289538 29 100.0 32 ............................. CGGCCGAACGTTACGGCGACGAGGTCGAGAAA 289477 29 100.0 32 ............................. CGGCCGAACGTTACGGCGACGAGGTCGAGAAA 289416 29 100.0 32 ............................. TTCGTTTGATCTCCACTCACAACGGTATTGAA 289355 29 100.0 32 ............................. AAAAATCTCCTTCACAACCTGGGGGGCTCTGG 289294 29 100.0 32 ............................. AAAACAATATTAGACAGCGCGCTATATAAAGA 289233 29 100.0 32 ............................. CGCTGATATTGTTCGCGCAGATCGTCGTACTG 289172 29 100.0 32 ............................. CCCTTGGATTCACAGTAAAGCCGCGCCTTATA 289111 29 100.0 32 ............................. GTCCGTGAATCAGGGGCGCGATAAATTTTTGT 289050 29 100.0 32 ............................. CAGGTCCTCGTATTCGGTTTTGAGGGCATCGA 288989 29 100.0 32 ............................. CGGATGAAAAATTCGCACGAATGCAGAATGGC 288928 29 100.0 32 ............................. TTCGGAGTCCGGATCATCATTCAGGATAACGA 288867 29 100.0 32 ............................. AAATCGCGCGGCGATCGACTCAAGGCGGCGAC 288806 29 100.0 32 ............................. CATTCGATGCCAGTAAAATTGAAGCACACCAC 288745 29 100.0 32 ............................. AAAATCGTGAGTGACTATCGTTCTGTTATTGC 288684 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 288622 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 288561 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 288500 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 288439 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 288378 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 288317 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 288256 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 288195 29 96.6 32 ............T................ AAGCCATTGACGCAACGGAAAACGCCAATGCT 288134 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 288073 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 288012 29 100.0 0 ............................. | A [287985] ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 308616-307306 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYZA01000001.1 Salmonella enterica subsp. enterica serovar Kottbus strain 08-0447 NODE_1_length_737009_cov_3.80428, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 308615 29 100.0 32 ............................. TCGGCCACGATGCAGAGGGCTACGAGCAGGTG 308554 29 100.0 32 ............................. GCATCGACTATATGCACGGAGTTAAACGCCGC 308493 29 100.0 32 ............................. AATCGCGCGCGCTGGCAGGGGATATGATGGTC 308432 29 100.0 32 ............................. GTGTTTAATCCGCAGACTGAGAAAGAAGAGGA 308371 29 100.0 32 ............................. ATATCGAATGGCGAATACAGCAAAGCGGTAAA 308310 29 96.6 32 ..........................A.. CGGCTTCTGCTATTAAATCTGGACTAATGTGG 308249 29 100.0 32 ............................. CGAATGGCTCAACTTTGAAGAGTTCAAGAAAG 308188 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 308127 29 100.0 32 ............................. CGGGCCATGTTCTTTTCCCTCTAAAAAATCCG 308066 29 100.0 32 ............................. ATTGTGTTGTCGCCGCTAGTGGCTTGGGTTAA 308005 29 100.0 32 ............................. AATATCCACTTAAACACAACCATTATTCGCTA 307944 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 307883 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 307822 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 307761 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 307700 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 307638 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 307577 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 307516 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 307455 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 307394 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 307333 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAATCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //