Array 1 13165-14753 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPED010000009.1 Clostridium paraputrificum strain D52t1_170925_F1 NODE_9_length_158037_cov_19.2605, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 13165 30 100.0 35 .............................. GATGCATTTAAAACTGATTTACTTGCAGCATGGGA 13230 30 100.0 36 .............................. ATGTTTTAGATCTTAATGTGTAGAAAGTACGACATA 13296 30 100.0 35 .............................. AAAGTATCAGTCTTTAAGTAAAAATCCCCTGTCTT 13361 30 100.0 35 .............................. AGAGCATTCTGAATAATAGAGCCTATAGCTCCATA 13426 30 100.0 35 .............................. GGCCTTTTTACTATACACTTACAATTTTCATCTGC 13491 30 100.0 36 .............................. CATTCTATGCAATAGCTTTATGAAACTTTCCTAAAA 13557 30 100.0 36 .............................. TGTCCAAGAAATTTCTGAACCCCTTGCAAGCTCATT 13623 30 100.0 36 .............................. GGCTGAAATTCAGGAAAATGGAATTATAAGAAATGC 13689 30 100.0 35 .............................. TCAATAGCTCCAACCTTATTGTAAATTTTAAAACT 13754 30 100.0 34 .............................. TAGAAAATGAAGAAGTTATAAGAGCTTATAAAAA 13818 30 100.0 35 .............................. ATTTAATTTGCAAAGAGAATTTAATAACTATAAGA 13883 30 100.0 35 .............................. GCAAAAAAGATGTAATTAGAAACGAATATTAAATA 13948 30 100.0 28 .............................. TCTAGTGAAAGATATAATCCATCTTGAA 14006 30 86.7 35 .TGG..G....................... AATATTAAAGAAACTTTCTAAAGATAAAAACTTAA 14071 30 100.0 35 .............................. AGAAATAAAATTAAAAACCAAAAATCTGAGTAGTG 14136 30 100.0 35 .............................. AATGTATATATAAAGTCAATACAATTATTATTTAA 14201 30 100.0 35 .............................. GAGGATTTAAGTTTGCTTATGGGTATTTTTAATGA 14266 30 100.0 36 .............................. AATGTTCTTAATTTAACGCCTGTTTCTTCTTCAAAG 14332 30 100.0 35 .............................. AAACCATAACTTGTCCGAACTATTTCTTGCACTTG 14397 30 100.0 36 .............................. TATCTCGTAGCTTTCCTGTATCTATAGGTGGCCCTC 14463 30 100.0 35 .............................. ATCGTTTCTAATCGTGGACTTTTATCCCTAGAAAT 14528 30 100.0 36 .............................. TTTTTTTATTACCTCCAATATTTTTTCTTATTCTAG 14594 30 100.0 36 .............................. TTGTTCTTTAATGCAGGGTATAAATAAGGTTGAGCT 14660 30 100.0 34 .............................. TCTTTAAGCAACTTAAAAACAGACAAACTATACA 14724 30 90.0 0 .........A....A.....A......... | ========== ====== ====== ====== ============================== ==================================== ================== 25 30 99.1 35 GATTAACATTAACATGAGATGTATTTAAAT # Left flank : CATAAACAAATAAATATATAAATATAAGAAGATATATTGTTATATTTATATAAATATATGTTTTTGTAAATATATGAATATACCAATATATAAATATGGGAAGCTCTAGAATTATTCTAGGGCTTCTTGTTTTATCTTTAGGAAATCATAATTGCAATTAAATTGTGATAGCTTCAATATTTTATTGCTAATGAAGTTTCATTTGATCTTAAAGTATAAAAAATAAAATATATGCAAGGAAGATTTTTCAGAGACAAGCTTGGAAAATTCATAGAAGCAAAAAATCACGACTTCACAATGGCCTCGTGAATTTTTTATAAATAAAATTTTACCAAGTGATCTTGAAATGAAAAATCTTGAATCAACTGTTATTACAGTGATAGAAGATGAAAAAAGAAAAATGAAATCCAATATTCATTTGCTTGGTAAAAAATTTGTAAAACTTGAATTAATAAGTAATGGGAGAGATAATAGATTTATTGAATGGCTTTTTTCCAATG # Right flank : TAAATGTGTCACAATATATTTACAAGTATATGTATTAAATGTAAAATTATACACAAGGAGGTGATATAATGAATGTTTTTGAAATAAAATTAAAAGTATTTTTATTAAAAGATATAGAGATTAAAGAGATTCAAACAGTAATTTCATCATTTATTGATAAGTCTCTTGCTAAAGATAAAGAATTATTAGAGTTACATAATAAGAATACTTTCAAGTATTATTGTTTTGATAGTTTATATCCTATAGGTGAGAATAGTTTATACAATGGTGAAAACGTTTATACCATTCGCATTAGGACAATAAGTAGAAAACTAGCGGAGTATTTTTTAGGTGATTTGCCTAATGAATATGATGAAAACTTAAAGGGATTAGTGGCAGAGATAAAAATATTGCCTAAAAAACATTTAGATAAGATATATGCTTTAACACCAGTAGTTATAAAAAATAATGATGGATATTGGAAAAATAAGATTGCTTTAGAAGAATACGAAAGAAGATTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 23554-24494 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPED010000009.1 Clostridium paraputrificum strain D52t1_170925_F1 NODE_9_length_158037_cov_19.2605, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 23554 30 100.0 35 .............................. TTGGCTACAAGCTGGTTGAATAATGCTTTAGCTGC 23619 30 100.0 34 .............................. AAGTAAATATTTTGAGATATTAACCCCTTTGTTT 23683 30 100.0 36 .............................. CAGTAAATAGTGCATTAGCACAAGTTAAAGGATCAG 23749 30 100.0 33 .............................. AAGTAAACAAGAATGGTGGATAACGAACTATAG 23812 30 100.0 35 .............................. TTTGGGCGCAATATCTTCCTGTTATAATAAACTTA 23877 30 100.0 36 .............................. GTCATACGCATACTATAATACTTAGACTTATATACT 23943 30 100.0 35 .............................. CTAAAATCGGCATAGTGTATGTCGGTAATGAAAGG 24008 30 100.0 35 .............................. TAATTAACACTCCTTAAATATTATTATTACTTAAC 24073 30 100.0 35 .............................. ATTTGATAAGAACAGAACAAGTTTTCCAAGGTTAG 24138 30 100.0 34 .............................. CTTGTTGATGCTACAAGTATTTGATGTGGCTTAA 24202 30 100.0 34 .............................. TCTGCATTTAAAACTACAAAACAGAAATTTTTTT 24266 30 100.0 36 .............................. GTTGGAGGAAGAACTCCATGTAGCAAGTGTGCTAAC 24332 30 100.0 36 .............................. AGAGCAATCAAGTAAATTGGTTTTAAATGGGGAGTT 24398 30 100.0 37 .............................. ATAAAAAAATATCATAAAAATAACAAAAAAACCGTAA 24465 30 93.3 0 ...............A.........A.... | ========== ====== ====== ====== ============================== ===================================== ================== 15 30 99.6 35 GATTAACAGTAACATGAGATGTATTTAAAT # Left flank : TGTTCCTTTTAGCTTAAAGGAGGGAATATAATGGGCAAGCTGACTAATTATAATTATGCTTTTGTTTTTTATGATGTAGGGGAGAAAAGGGTTAATAAGGTTTTTAAGGTGTGCAAAAAATATCTATCACATTATCAAAAATCTGTTTTTAGGGGAGAAATGTCTCCATCTAAGTTAATAAACTTTAAGAAAGATATTAATAATGTTATAGATAAAAACGAAGATTTTATTTGCATAATTAAATTGATGAATGAAAGCATATTTGGTGAAGAGGTATTAGGCGTTAATTATAAAATAACAGGTGAGGATTTAATTATTTGAATTTTACCAAGCGAATTTTCGTGGGAAGTGTATTCAAAGCTCCATATAATCAATGTTTTAGTGGAACTATATTCATGGTATTTTAATTTTGTAAAATACTTGGTAAAATAATTAAAGAAGATAGATTTTATCAGGGTTATACTAATATTAATAAGTGCAAAAATGCCATTAAACCGTTG # Right flank : TAAGAAAAGTGAATTTTATTTTTGACATCTGTGTGAAGCTAATATAAACAAGAGATGTATAGAATAAGATAGCATGTCTTTATTTATCATAAAAGAAAAACCTAGAAAACTAGTTTTTTCTCTGTGAAGGAATATAACCAATAAATTAGTTTAAAAGAGAAAGCTGTATGTTTAAGATATCAATTTAGTCCTTAAAAAATTATGTAATAAATCTTTGCCAGTTCTAGTCTTTATAATTTCTTCCATCCTATCCAAACTAATCTCATAATATCCTTCTTCAAAAACATTAATCATAAGATCAGCTTCAACTAAAACTTGAAAATCCATTCTATCAATTTTTTCATAGCTGTGATGCATCTTTATTAAATAAAGTATTCTATGAATTGCTTTTTCTTCATATCCAGCATCTTTTAAGAACTCACGAGCTAATAGGGGAGCCTCTTTTCTTTGAAGTTCTTGGCTTGCATCTCCATATTTTTCTTTGCAAATTTTTATTCCTA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACAGTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //