Array 1 2968332-2965741 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZEJ01000001.1 Paenibacillus sp. D9 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 2968331 33 100.0 34 ................................. TCCGCCCTTAACCGGACGGCCCAGCGTGTCAAAA 2968264 33 100.0 33 ................................. TCATCCTCGTCGATGTCCCGGACCAGCACCAGG 2968198 33 100.0 33 ................................. CGCTCTGCCGTCAGCCGCTCTATCTCCGCCGTC 2968132 33 100.0 34 ................................. CTCATCCTTTCGTATCGCTAAGAATATGAACGTA 2968065 33 100.0 34 ................................. TGATGCAAAGTCTTCGCGCTCCAGTCCGTAACGA 2967998 33 100.0 33 ................................. AGTTTTGTTGAGATACTGTTGAACCTCAACAGA 2967932 33 100.0 35 ................................. AGGTGTGGTTATCTCTCGAAGAGACTTGGGGGCCG 2967864 33 100.0 34 ................................. TTTGTTGCCATGCTCAGCCAAACGCCTGTCTCCG 2967797 33 100.0 36 ................................. AAATTGCCGTTTGAATGTCGTGACGTATCCGCGTAT 2967728 33 100.0 36 ................................. AGCCAAGTCCCCTGGATCAGTTCCATGGCCTCTTTG 2967659 33 97.0 36 ..................G.............. CATCATCGCTATCCCTCCTTGGGAAGCCTTAGCCTC 2967590 33 97.0 36 ..................G.............. CCCGAACAGTTGATTCGGCCATGCATCCTCGCCGGG 2967521 33 97.0 34 ..................G.............. AAGTATGAAGCCGCAGCAATACAAGGTCATCGCC 2967454 33 100.0 36 ................................. TCTGCCCAAGGGATGTCTGTACCCTCTGCGTTTCGG 2967385 33 100.0 34 ................................. GCAATAGAACCCATCACGATCCGCGTAGATAATC 2967318 33 93.9 35 ................TT............... CTCGCCGGCCAGGTGCAGCGGATGCTGATACTGGC 2967250 33 100.0 35 ................................. ATGATTGAAGAAAACGGATTGCCAACAGGCCTCCC 2967182 33 100.0 35 ................................. ACGTTGTCGGCATGGATCTCGGTCACGTAGATTTT 2967114 33 100.0 35 ................................. TTGAAAGAAGGGTTGTAGACAGCACCCCCGTGTTA 2967046 33 100.0 35 ................................. CCCGTAGGTAAAGGACTGGAATACCTGCAAGCTCG 2966978 33 100.0 33 ................................. CGGCCACGGCCGGAGGGATGCCACCCAGCGAGG 2966912 33 97.0 34 ..T.............................. ACTGGACGCCCTACGCCCGCGCCGAATATTAACG 2966845 33 100.0 34 ................................. ATCGATGCCGAGTTGGCCGGGGACACCATTGTCC 2966778 33 100.0 36 ................................. CAATTGGAATGTCTATCGAAGGTGATTTTGCACCGT 2966709 33 100.0 35 ................................. TCTTACTGCGGCGAACATTACCGGAGTTGCGAGAG 2966641 33 100.0 34 ................................. AGAACAAACAGGTATTCCTAAGGGTAGGATATCA 2966574 33 97.0 35 ......T.......................... TGCCAGGTCAACAAAGCCGCTCACGACCGCGGATC 2966506 33 100.0 33 ................................. CCTTTGAACAGGTACGCTTGCTGGCGGATTTTC 2966440 33 87.9 36 ..A......T..A............G....... AGCTCGTCGGAAACGTTGTACGTGTTGACGGCCATT 2966371 33 84.8 33 .........T..A...AA.......G....... GCTTGAATTGAGAGCAATCCCGAAAGCCGTTAT 2966305 33 87.9 33 .........T..TA...........G....... TTTGGCTATTTGCCGACAGAATGGCAGCTCGTC T [2966277] 2966238 32 84.8 34 .........T..AA....-......G....... GCTCCGCTTTCGGAGCCTGGAGGGGCCATTGGTT 2966172 32 87.9 34 .........T..A....-......C........ TTCAGAAAGTTGTATTACATCGATTAGGCCGGCG 2966106 32 87.9 33 .........T..A..A.-............... TCACACAGATAGGCCCTTTGCGGCCGCGGCACG 2966041 32 87.9 34 .........T..A....-...A........... TGCACCATGTCCAGCAATCGCATAATCTTGTCGA 2965975 32 81.8 35 .........T.AA....-..TA........... TGCTACGGCATTTATGGAAAGGTTAGCAGCTTTGT 2965908 31 81.8 36 .....-......AC...-.T....A........ GACTTGGGAAGTGCCTGTTGCTGTTACACCGTAAGG 2965841 33 87.9 35 .........T.AA...................A CGAGCCTGCCGAGGGCGTGAGTCCACTCGGCACAG 2965773 33 69.7 0 ..A.T.T.....T....A...T..TG...G..T | ========== ====== ====== ====== ================================= ==================================== ================== 39 33 95.1 34 GTCGCTCCCCGTGTGGGGAGCGTGGATTGAAAC # Left flank : GGAGGAGGTCGACGGAATGCTCGTATTGATTACGTACGACGTAAGTACCATTACCAGTGAGGGACGCAGGCGTCTTTCGCAGGTAGCGAAAAAATGCCAGGATTACGGACAGCGGGTGCAGAACTCAGTGTTTGAATGTGTCGTTGATTCGACTCAGTTTCGACGTCTTCGGTTTGAGTTAGAGGAGCTGATTAACCCGGATACGGACAGCTTGAGGTTTTACAATATGGGCGACAGATATAAAACAAAGGTCGAGCATATCGGGGCAAAACCTGCTTACGATATGGATAGTCCGCTGATTCTATAGGAGCAGTACTTTGGTTCGAATGGGAAGCTCCCATAAAAACCTTGGGGGATTCGCACCTCGAAAATTGTCGAAAACAATCTATTTTCGGATGAGTGAAATGTAGTCAAGTATCGTAGCATACCTTATTTATTTGTTTTAAGGCGAAATGAACTTTTTCCATACCTTTATTAGATGGTTTTAGGTGATTTTTGCT # Right flank : CACCACCTGGAAGGAGCAGGTCAGGTCATCAAGGTGGCTTCTCGTGCGGGAGTGTGGATTAAAGTAACAAACGCTACTCTTTTCATATCATCCAGTTGATCCCAGTATAGGGGCGGGATAATCGCACCGGATTTGTCCGAACCCGGAACTTGCCGCTCCGAGGCGCCAAAACATGATTTCCAACGGGTGAAAAAATCCCCCGGCTGTGCTAAACTACAGGAATTGCATGTAATTTGGGGGGTAACAAGGCTTTATGCTTATCATAGGAATCGCCGGCGGCACCGGCTCGGGCAAGACGACCGTCGCCCGCTCCGTCATCGACCGGATGGGACCGGGCAAAGTGACATTCGTATCGCAAGACAACTACTATAAGGATCACTCGGAGCTCAGCATGAGCGAGCGGGAGAAGATCAACTACGATCATCCCTTCGCATTCGACAACGAGCTGCTCATCGAGAATCTCAAAACGCTGAAGCAGGGGCTTGTCGCCCATGCGCCGG # Questionable array : NO Score: 8.90 # Score Detail : 1:0, 2:3, 3:3, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGTGGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.40,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [58-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2977005-2978790 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZEJ01000001.1 Paenibacillus sp. D9 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================================================================================== ================== 2977005 33 100.0 36 ................................. TACTGCTCGTTAGTCTATTGAATGCTTTTTGGGTGA 2977074 33 100.0 34 ................................. CGGCTGTAGAGTCGGCCTACACTCGAATTGCAAA 2977141 33 100.0 35 ................................. CCCCGGCCCAAGTACCGAATGAAGACACAGTCGGC 2977209 33 100.0 34 ................................. CTTGCTATGGCCAGCGCGGCATCGGATGGGGAAA 2977276 33 100.0 35 ................................. ATGGACAAGCAGCTATTTTACATTTTCGATGATGT 2977344 33 100.0 35 ................................. AGTCCGAGTGGGTGCAAGGTATGGGTGCCTTTACG 2977412 33 100.0 34 ................................. AGGAGTCGGTGAAGCTTTGCTATGGGTGATAGGC 2977479 33 100.0 33 ................................. CCTGGACGCATTATATCAATCTGAGCGGCCAGG 2977545 33 100.0 36 ................................. TCCCATCCCTTGAGGCCGCCTGGGGTGGTTGGTCGC 2977614 33 100.0 33 ................................. GGCACCAATTCCGTTTGCACAGACGTTATCGTA 2977680 33 100.0 34 ................................. TTCGATCAAAATAAACACCGATGGTTCAATGTTT 2977747 33 100.0 33 ................................. CGTCATCGGCACCCGGCCCGCGCACTCAATTTA 2977813 33 100.0 36 ................................. ATGAGCGGTCATAATATCGTCTCCTTCGTTTATTAG 2977882 33 100.0 34 ................................. AACGAGGCGGTAGAAGCTCTTGATAAGGTGCAGG 2977949 33 100.0 36 ................................. CCCTTGCTTGCCGCCTTTGTTTACCACCCGATACTG 2978018 33 100.0 35 ................................. TCCGAAATGACGTGCCAGATATGCTGCAGCCAAAC 2978086 33 100.0 33 ................................. GCATTCCTCCGTTCGTATCTAATCATGCTCAGC 2978152 33 100.0 33 ................................. TTTTGAGGGGCGTGATGTCATGAGTAACGAACA 2978218 33 100.0 32 ................................. GCCAGTTCGGCTATCTCCACCTGGAGTGCAAG 2978283 33 100.0 36 ................................. CCATGGGCTGGCAGACTCGTTGAGATGGAAGCCGCG 2978352 33 100.0 36 ................................. CAGCGATAAAGGTACTTGAGCGCGGAGGCTGTGTTC 2978421 33 100.0 33 ................................. AACGAAATTGTCACAATCAAAACCCCAAATTAC 2978487 33 100.0 34 ................................. CTATTCTCGGACGGTGACGCAGAGCACCTGCAAA 2978554 33 93.9 41 T....................A........... CGAATAGACGTCGACCTCCTGGAGCGCAAGGAACAATCAAC 2978628 31 81.8 99 ................A...-..AT.-.....A CTGATGGCTATTGTCAGAACGGTTCCGAACACCGGGGCGACTCTCTATAGGGGGAGCGTGAGTTTAATCTGTCCCCCTACACAAATGACATTAATAAGA 2978758 33 84.8 0 A.........TT.............T......C | ========== ====== ====== ====== ================================= =================================================================================================== ================== 26 33 98.5 37 GTCGCTCCCCGCATGGGGAGCGTGGATTGAAAT # Left flank : CTCAGCGTATTGTTGAACCGATAGAAGGTGGTCATGGACTGATTCCCGCTGACCGTCCAATTGCCGGATATGAGCTACGAATTCAGTTTGGCTTGCATGATCTACACTCCTCGGCATCCTCTTCCCTCCTAGAAATACAGGACCTAAGAACCTTTTTTACAGTTACTCCGAGATAGGGTTCGACAATTATACACACAAACCTTCTTAAATAATGGAAAATATTCCAGTATAGATTTGGATGTGATTTAATCCCGGTTAAGAATGAACATTCGGGTTGGCAATAATATTTTTGTTCATTATGATAGGGGCAGCAATCCTTGTGCGAATGGCAAGCTCCCATAAAAAACCGGGGAGATTCGCACCTCGAAACTTGTCGAATGAAGTTCATTTTTAGAAAAAGGTTATTTCGTCAATCCTCGATGCATACCTATTTTGATTGCAAAATTCGCGAAAACAGCAATTCTCATACCTTTCCAGAAAGGTTCGAGGCTGTTTCCGCT # Right flank : CTTTATTGCGTTCGTGACTAGCCTGATTATGCCGGGTACGGAAGTGATTTACCAACCAACATTACATCCCGCTACTCCCCGCCCCCATACTTGCTCCGCAGCCTCCGCACCGCATCCATCAGCTCCCGCCCCGCGAGCTTCTCCGCCTGTCCGTACAGCGGCTCCCACAGAGCCATCCACTCCCGCCGCTCCGGCTCCTGCAGGTCGGCGATATTCATCCAGCGGCCGCTCCGCATTTCCGCGAGCTCCTTGCGGCTCATTTCCCGAGCGCTCTCGTTGGCCCAGCCGGTCGTCTCCCGCATCGCCTCCTGGATGATGGCCTGCACATCCGGCGGCAGGCTTTCCCAGAAGGAGCGGTTCATCAGCACGGCGTACCCGAGATAGGCGTGATTGCTGACCGTCATGTATTTCTGCACCTGATAGAACTTCTTGCTGTAAATATTCGTGATCGTATTCTCCCCGCCGTCGACCGCTCCGCTTTCGTAAGCCTTGTACACGCT # Questionable array : NO Score: 8.98 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:-0.20, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGCATGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.50,-8.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA //