Array 1 267888-269441 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOMU01000064.1 Escherichia coli strain SC364 NODE_1_length_380662_cov_145.312_ID_19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 267888 29 100.0 32 ............................. GATACGCTTCATCGCCCGACGTGGGGAGCATA 267949 29 100.0 32 ............................. ATATTGTCAGAAACTGGCTGGAGCATGGTGAC 268010 29 100.0 32 ............................. GGATTTTCTTTGGTGGGGAATGCCCGCCGTGT 268071 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 268132 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 268193 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 268254 29 100.0 32 ............................. GGAATAATTACCGCGCTGATTAAATTAATTAA 268315 29 100.0 32 ............................. GCGGCAGCGCCCGCCGGGTACGACGGCAGCAC 268376 29 100.0 32 ............................. CGCTTTTGCTCAGTAGTGAGTGTGATTTCATC 268437 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 268498 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 268559 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 268620 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 268681 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 268742 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 268803 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 268864 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 268925 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 268986 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 269047 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 269108 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 269169 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 269230 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 269291 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 269352 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 269413 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 284943-286007 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOMU01000064.1 Escherichia coli strain SC364 NODE_1_length_380662_cov_145.312_ID_19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 284943 29 100.0 32 ............................. CCCCTTGACCTTAACGCCGCGTTTAGCGTCAC 285004 29 100.0 32 ............................. GGTATTTTCAGCAGATTAACCACCGCGATCGC 285065 29 100.0 32 ............................. ATTACATCCGGCAATATCATGCTGATGCCTCG 285126 29 100.0 32 ............................. GGACGCCCAGGAAAAGGACATTGCAGCGTCAT 285187 29 100.0 32 ............................. AAGGTCGTAAACATTGAAGACGCGATCGCGCG 285248 29 100.0 32 ............................. TAACAGGAATGTTTACGCTGGCTGAGGCTGAG 285309 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 285370 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 285431 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 285492 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 285553 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 285614 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 285675 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 285735 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 285796 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 285857 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 285918 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 285979 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //