Array 1 52717-52983 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQTQ01000126.1 Methanotrophic endosymbiont of Bathymodiolus puteoserpentis (Logatchev) isolate BPUTEOMOX, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 52717 27 71.4 32 TGA...A.-G.GG............... TGATCTTAAAATTATTCATGAGTTAGTTGTTT 52776 28 100.0 32 ............................ TTATTCAGCCGCGTATTTAAGAGAGAAGTCAT 52836 28 100.0 32 ............................ AAGGTTCAGAAACTAAAGCGTTAGCCAACTCA 52896 28 100.0 32 ............................ GAAGCAAAATCACAAATCGGTTGATTATCAAT 52956 28 96.4 0 ....................T....... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 93.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GCTTGGTTTTTACGATTAAGATCTTTATTTAACGCTTTGATTTCATTTCTTAAATTTCTGACAGTGACTTGTTTTTTGCTCTCTGATGACAAGACGGATCCAGTGATGAACTGCTGTTTCCATTCTTTAACATGATGAGGGAATATACCTTCGATTCGACAATGCTTATGACAGTCTTCGTCGCTCAAGCCATCCATTTTTATGATAAGTTTAAGGCGTTCTTCTAAACTCCAATCCTGAGGTCTTTTCTCTTTTTCTGTCATTGGCTGTGTAAGTGAAGCTGTATTATCTGAAATATTTTCTAATTGATGGTTCTTGGATTGAGTAATCCATCGTTGCAAAGCTGAACGACTTATTCCCAATGTTGTTGCCATCTCTGTCAGTGATATTTCAGGTGATCGGTTAAGGGCTTTTTCTACCGCTTGTATTTTAAATCCTTCGGTATATTTTGGACTCATTTTTCTTTCCTCTAAAGTTTATTTTAGAGGCGACAACTATTC # Right flank : ATGATATTTCAATGATTAAAGGGTGGGTGATGATTTTTGTTGAACTACCCTTTGACAGTCCAACTTTCTATACCAGCGATATTGATCAGCAATTCAAATTTATAGGCTGTTATCTTCGGTCTATTTTCAGGACCTTGGCACCTCGTATCTTCCCGGTCTTTAACTCCATCAGTGCTGTATTAGCTTGTTCCAGGGGGAATATTTCAATTTCAGGTTTAAGTTGCATTTCGGCAGCAAGTGCCAGAAATTCGCTGACGTCACTTCGGGTAATGTTTGCGACACTCTTAATTTCTTTCTCTTCCCAAAGATGCTGTGGGTATTCTAGTTCCATTAAGCTATTTTTACTGCCTTCCTTACGAATGGCATTGATCACCAGTCTACCACCTGGTTCGAGATTAGCTAACGCCTCAACAATGGGCGGCCACACGGGTGTAGTATCAATAATACAATCCAGCTTGTTTGGCGCCTTGTCTGTTGTTTCACCTGCCCAAACGGCTCCT # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1009-2587 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQTQ01000109.1 Methanotrophic endosymbiont of Bathymodiolus puteoserpentis (Logatchev) isolate BPUTEOMOX, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 1009 36 100.0 33 .................................... ATCTTTCTGTATGTATTCACCTTATGCCTCTAG 1078 36 100.0 34 .................................... TGTTAAAGATATACTTAGCTAATGGTTTATGGAT 1148 36 100.0 34 .................................... GATGATTGGAACATCGAATTTAACTTAGCACAAG 1218 36 100.0 35 .................................... TTGGCTGTGTTAGGCAAATACACGAATTAACTACG 1289 36 100.0 44 .................................... GATTGTCTTCGTAGACCCAAGGATCTCCGGTAGAGTAACCCTTC 1369 36 100.0 34 .................................... GCAGGAGATGTTCCCGAATCAAAAGAAAATAAGT 1439 36 100.0 34 .................................... AAGCATCTTAGCATCATTACGCTTAGCCCTATCT 1509 36 100.0 34 .................................... ATGCACTTTCCTTGATGTGGCTCGATAAATTAAG 1579 36 100.0 33 .................................... GATAAAAAGCGAGCCATTAGACTTCCCCAGTAG 1648 36 100.0 33 .................................... ACAGGGGATAGGTTAGGATATTCTGTAGATATA 1717 36 100.0 33 .................................... AGTTGAATTTATTTGATTAGAGTTGATCTTAGT 1786 36 100.0 34 .................................... CTCGCCTGCACCTTGCTATGCACTGAGTTCCAGT 1856 36 100.0 33 .................................... TGGTTTGGTATTTTCGTACTGTTTAGAAGTTGT 1925 36 100.0 34 .................................... TAACCATTATTGTTTCGAAGTGCTGTATGTCTTG 1995 36 100.0 34 .................................... GATCAAGATCTCTTTCGTTTAGCTGCTTTTCAAT 2065 36 100.0 33 .................................... TTTATTGTATAAATATTGGATATATTCATTTTC 2134 36 100.0 34 .................................... TGACCTGCGCATACTGTTAAATTAACACTTGTTG 2204 36 100.0 33 .................................... TTGACACTCTATCGCCTGTTATTTTTTTTGGTT 2273 36 100.0 34 .................................... AATGTTAAAAGTTCCTTTCTAACTTCCTTTTCTC 2343 36 100.0 34 .................................... ATCTGCTCAAGTATTAGTAGATCAGTATACTTAC 2413 36 100.0 34 .................................... GGAATGGCGTGGTCGGGGTTGTAGGCGTTGGCAT 2483 36 100.0 33 .................................... AACACAACATTATCAGCCAGTACTACGCCGTCT 2552 36 88.9 0 ............................G..GT..G | ========== ====== ====== ====== ==================================== ============================================ ================== 23 36 99.5 34 GTCAGAAAGTAGCCCTGTTTATGAAGGGATTAAGAC # Left flank : TCAAAAACAAAAAGGTAAAGATACTGATATTTTATATAAATTAGAAAGCTTAGGACATAGAGCGGCAGGTTTATATGGGCATAAATGGTTAATATCAGCACGAAAACTAGATGACCAAGCACTTAAGCGAGCAAAAGAATATAAAATTGATGTAATTTATGGGGCTGATTTAAAAAACTTAAAAGATAAGGTAATTACATGGATGGGTAAAGTATAATAATTTAGAATGCTAGAATTTGTAGAATTTGAACTTAGGCAATAGTTGCATAAACTTTGCAAGTAATACTTAGCAATCAATTCACTTTTAGTTGGGCAGGTATCAGGTTGATGTATAATGCCCTTTCGCATATTTTAAGCCTATGCGAATTATATAAAAAAGGATCCAGAATTGATTTTTTTGTATTTTTGAGTTAAAAATAGGGTTTAAAAAATGCTTTTTAAAGGCACTTGTGAACCCCCTTTGCAATCTATTGATAGTAAAGGATTATTAGCGGCGAGCA # Right flank : GACTCATAGAAAATAGAGGGCAGAGACTTTTTAATAGGGCGGATGCTTGTAAACGATGAAAAGAACATTATCGCAATGAGTGATTAAATCACTAAAGTATGTATAAGCAACTGTTTTTTAATAGTTAATATCAAGAATCTTCACTCATCTTGTCCCCCGTTTTGACCCTAAATAACTCAACTCGTTAGTCATGTATTAACATTTGATTAAGCAACCTTATCAAAATCAATTCGACTGAGTTTTTCTGTATCGACATTTTCCTTTGCCTTCCATAAATCGTATGCTTCTTGTAATCGCATCCAGCTTTCAGGACTTCCACCTAATACTGCAGATAATCTGATTGCCATTTCTGGTGATAGGTTAGATATACCATTTATAAGCCTTGAAAAGGTACTGCAAGCCACGCCTAATGATTCAGCAATATTATTGGCTGAAATATCATCAAAAGGCTCTATATAGGTTCTGTAAATTAACCCTCCCACATGAGGTGGGTTATATTG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGTAGCCCTGTTTATGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 18702-20272 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQTQ01000062.1 Methanotrophic endosymbiont of Bathymodiolus puteoserpentis (Logatchev) isolate BPUTEOMOX, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 18702 36 100.0 34 .................................... ATCTTCCCAAGATTCAAATGTTGTTTCTTCTTTA 18772 36 100.0 33 .................................... CAATATATACCGTCCTAATCACTGTAGCCCCTG 18841 36 100.0 34 .................................... GGCGTGAATGCGTGGCCTGTAAAGAGCGCTTTAC 18911 36 100.0 34 .................................... TCGAATCCATCGAGAGCCGGATTGGTTTAAATAT 18981 36 100.0 34 .................................... TACGCTCATACTCCCTAATCAAAATTACATCGTC 19051 36 100.0 34 .................................... GACTGGCACTGGATGCCGCTTTTGCTTTGTTGAG 19121 36 100.0 34 .................................... TTGATAAGTGAATTTAGCATGGTTTAATTCATCT 19191 36 100.0 35 .................................... GTCATTAAACCAACCTGACCAGTCCTGGGGTTTCT 19262 36 100.0 33 .................................... TTCTGTATGGGTATCCTCAGATACACTTATGTC 19331 36 100.0 34 .................................... GAGGCCGCGATGTTATCAGGCGCGGGAGCCTTAT 19401 36 100.0 33 .................................... ACGTTATCTTCAGTAACATCGTCTTCAGCTAAG 19470 36 100.0 33 .................................... TTACCAGCAATGTCAGACTCAACAAGAGTATAC 19539 36 100.0 35 .................................... TTGCAACGCATGTAGCCTGGTGATGTTATTGTCCC 19610 36 100.0 34 .................................... CAATGGAGAAATCCATTGAAGAGTTCACAGGGAG 19680 36 100.0 35 .................................... GAACACTGGTTTACATGCATTACACCTACTCTTTT 19751 36 100.0 33 .................................... TTCAAGCTCATTTCTAACGCTACGCTTGTCTCT 19820 36 100.0 33 .................................... TTATTTTTCCCCGAATAGTTTGCAGTCGCGTTT 19889 36 100.0 33 .................................... GCAAAATTGCCGCTGGATTCCCAAAATTGCACC 19958 36 100.0 34 .................................... ACTCCACTTTATGCCAGCCTGACTCGTAGGTTAA 20028 36 100.0 33 .................................... AACTGTTTCGCTAGTACTTCATGTGAATTTTTC 20097 36 100.0 35 .................................... ACTAAGTATTTCAGCTTGTACCTCTATTCGTTCTG 20168 36 100.0 33 .................................... AATATCCCCCGCTCTAGCTAAAGAGCTTGCCTT 20237 36 91.7 0 .................................AGT | ========== ====== ====== ====== ==================================== =================================== ================== 23 36 99.6 34 GTTAGAAAGTAGCCCTGTTTATGAAGGGATTAAGAC # Left flank : GGATAAGTTATCCTTTACCTTAAGCCATCGCTTTAATCGTTTTAGCGGAAAATTTGAGCGTAAACTAAAGGCTACTTTTTATTATCAGGCCGAACTGTATGAGAACTTTTCAGTTCGAGATACAAAAGTGAGGCGGATGTTGTCAGGACAATATCCTGATGCAGGTGCGTCAGATAAAATAGTGACGTTATTAAAAGGCGATCATTACTTTCTTTGTGTCGGTTTGGGAGCTAGCTTTGGTGTGCAAAAAAATCATTATAAATCCGTGCTTACAGTGTTCGATTTTGATGGTTATTTACAAAACAATTATGCTTAAGTATTTTATGGAACTATGTATAATGAACTTGTCGAGTCAATGAGTCTTCATGCCTCGATAAATGTAAAAAAGTAAGAATAGTGAAGATTTTGTGTGAAAAAGAGAGTCTAAAAAATGCTTTTTAAGTGCACTTGTGAACCCCCTTTGCAGTCTATTGATAATAAAGGGTTATTAGCGGCGAGCA # Right flank : TAGCAAGGAAGCTCATTGTTAACAAATTTGTCAGAAAGGACGTAACGACAAATAATTGCTTTAATAGTGCGGTATCATTATTCATAAAGCCGCTACTAGCGCTCTATTACGCAATCCATTAAAAGGAATTCATGTTATGTCTTTAAGCCCGACTACCGCTATTTGGCACCAGCACACTGAGGACGCTTTGCTTAAATCTATTACGCAAGGCGAATACCCTTATCTTGGTTTATACAGTTCTGATTTTTCTAGTAAATCTCGCGAATTTTTACATAAGCAGACAAAGCTAAAAAACAAACCTGTTGATGAGTTTATTCTGGGCTTACGCAAATGGCCGGCGATTTATGCCTGTTATTTAACGTTGCATGTGGCTGAAAGCTATGGTGATGAAACAGGTCGTGAGGTTTACCCCGCTATTAGTCAGGCTGTGTTTGCTAGTCGTCAAGAATTAACGACACATGATAGAAAGGCGCTTTGGCTTGCCTATCGGCGGGCTTGTT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAGAAAGTAGCCCTGTTTATGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 1348-123 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQTQ01000065.1 Methanotrophic endosymbiont of Bathymodiolus puteoserpentis (Logatchev) isolate BPUTEOMOX, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1347 27 96.4 32 ...-........................ TGAATCGCAATATCACTAACCGAGCAAGATGG 1288 28 100.0 32 ............................ TAATCAATACGGGCGTGTTGAGTCAATGGGAC 1228 28 100.0 32 ............................ ACCTATTAACAATGTTATGTGTTTACCTATCA 1168 28 100.0 32 ............................ TATTAATAGAGCCATCACGCAATACAGATCCA 1108 28 100.0 32 ............................ TAGCTCGTTAGGCACATCCTACTTGTTGGCTA 1048 28 100.0 32 ............................ GAGTATCGGCTGTAGTACGGCAAAAAGATTGT 988 28 100.0 32 ............................ CTGAACTGCTCGCGTTTATTATGAAGATAGAT 928 28 100.0 32 ............................ GCTAGGCTTATTTTGGGAGTCTATCGGTGGTA 868 28 100.0 32 ............................ ATTCAATAACTCAATCACATGACTATCCACAA 808 28 100.0 32 ............................ GTCATCCATAGAATACGCTGGTAAAACTGCAT 748 28 100.0 32 ............................ CACCGCCTGAGCCTGAACCACCGTTATCTGAA 688 28 100.0 32 ............................ ATGAGATAATTTTTACATCATCATTACCAACA 628 28 100.0 32 ............................ CTGCTTCGATCATTAACTCAGCATCTTCCGTA 568 28 100.0 32 ............................ TCTAACTCTGTTATTGATAGAAGTGATCGTGA 508 28 100.0 32 ............................ ATCACAAGACTTGAAAGATTAGAACCAATTTT 448 28 100.0 32 ............................ TGACCACGTCCCACCCTCGATCTCGACTGCAA 388 28 100.0 32 ............................ TCTTGATTTTGATACTAGCTCTCTTTCAAATG 328 28 100.0 32 ............................ TGTGGGGGTAAAGAGTCCTGCGAAAGATGATT 268 28 100.0 32 ............................ ATATTAAATACATGATTCTTTCCTTGAACAGT 208 28 100.0 31 ............................ AAAAAACCCCCGTCTATTTCTTCTTGTCCTG 149 27 75.0 0 ..................G.-.G.TTGT | ========== ====== ====== ====== ============================ ================================ ================== 21 28 98.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TCTTAAAAAACAATTTCCTAAAGAAAAGCGCCACATGGCTCTTTGAGCGCAAGCTCCGACCTGTTTTGATGGCATATCTGTAATAAAATGTCGGACAC # Right flank : TCAAACTAGTTGTCGCCTAAAGTTGTAAATCTATGCCTGCTCTTTTTGCTCGTTTTCAGTTTTTTGATTTTCTGGGTTTAAGTAGACTTCCTCTACTTTATCCCAGTTCCTTATTTCACCACT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //