Array 1 1029-1508 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEMP01000118.1 Thermus scotoductus strain 8_S8 NODE_206_length_3080_cov_153.518_ID_411, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 1029 36 100.0 35 .................................... GAGGCGTTTAGGGGGGAGGCTAAGCGGTATGAGAG 1100 36 100.0 38 .................................... CTACTATGTGGTGGGCAACACGGAGGAGCCAACGATGG 1174 36 100.0 42 .................................... TCTGACTTTTTCGTCCTTGAGGGCCTCGCTATAGGCCGTGTT 1252 36 100.0 43 .................................... TTGGACCCTTTCCCCACCTTCGCCTCGATCTCCTCGTAAATGG 1331 36 100.0 31 .................................... CGTGGGGGCGGCCCTACCTCTTCACCCTCCT 1398 36 100.0 39 .................................... AGCACTAGCTAAGATGGCAAAGAACTTGTTTGGTATTAA 1473 36 97.2 0 .................................C.. | ========== ====== ====== ====== ==================================== =========================================== ================== 7 36 99.6 38 GTTGCAAGAGATGCTTCCCCGAAAGGGGATTGCGAC # Left flank : AGTTTCCCAAGGGAGAGGCGGTGTACAAGCTTTTGTACCTGGAGTCTGAGCGGCAGGAAGGGAGGTGGGCGGAGCGGAGGTTGAAGGGTGTTGCCGAGGTGCAGGAGGTGTTGGAAGGGATGCTTCGGGAAAGGTATGCCCCCCGTACACAGACGCTTACACATAAATCTTGACACGACCGTATCGATTGGGTAAGTATTGGTCCGGTTCATCGCAAACGGTATAAAGCCAGGATCCGTTTGACCGAGTACACCGTTACGTTCAAGTGCTATAATCGGGGTGTCCGGAAAGCCGGACGAGGATCTTGAAAGCCGATTTTCCTCTTGCGCAAGGGCAATATGCGTTTTCACCTTCTTATCGACCGCTTCTACAGTGGCTTCGCAACGAGCTAAACCCCGCAAAACCCCCTTTATTCGCCATGTGTATATTCCAGCCTTCATGATTCTCACAAACCCCCCCTCCAGGAGCACCGTCCAGGACGATGTTCTAAGGGGGGTACC # Right flank : CCCAGGCTGGAAGCCTGGGTGGCTTGTCTTTTTGGCTCTGCCAAGCTTTGTTCGCCGCCTGCTCTCCCGTCCCTGGCAAATGGGAACTAAACGGGCTTTCTCGGTCGCCAGGGCAGTAGGTGGTGGTGACCTCCCTCCACCTTTATGAGCCGAATCCCCTCTAACGGTGGCGCAGGGTCTTGGCGGAAGGGGCATGGGAGCGGGGTCTCCTGCCGGTGTTCGGATTTCACAGGTTGCCGCCGGTTCCCTGTTATCCTCCATAACCAGGTGGTGGGCAATGTGGAGAACAACCCGCGACCCCGACGCCCTTAGGGCTAGTTTTATCGCCCTTCGGGAGGCGGTTAGGCGAAAGGCCCTGGCCCTCGAGGCGCGGTATGAGAGGAAAAGGCGCCCCCTGGAGCGGGCCCGCCAGGAGTTCTTGCAGCTGCTCGAACACCTTCGGCAGCAAGGGGCAGAAGGCCGTTACCCAGCCTCCTTGCTCAAGCCCGCCCTCATGCGGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGAGATGCTTCCCCGAAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 777-2207 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEMP01000016.1 Thermus scotoductus strain 8_S8 NODE_114_length_6843_cov_37.4613_ID_227, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 777 29 100.0 30 ............................. CAGGGCGTGGGCATCGCCCTCGGGGTGGCC 836 29 100.0 32 ............................. CGTAAATGGGCGGTAGGCAGACCTTCCGCCTC 897 29 100.0 32 ............................. TGGGTCTATGGCCGCACCCGACAGGAAGTGGC 958 29 100.0 32 ............................. CGCCCTGCATCCGTCACCTCACCAGAGGGGCA 1019 29 100.0 32 ............................. ATGGCGGAAGGCCTCTTACGGATCTGGCAGGC 1080 29 100.0 31 ............................. GGCCTTCTTTTTGCTTCTTTGGGGAGAGGAC 1140 29 100.0 32 ............................. ATAATCCCAGATGGCCGGAACAGCCCAAAGAA 1201 29 100.0 32 ............................. AGGCCGCGGAGCGCCGCGTAGAGAAGAAAACC 1262 29 100.0 32 ............................. TGGCTCCTGTCTCGCCTGGGCCGCCATCGTGG 1323 29 100.0 32 ............................. CGCCCTGCATCCGTCACCTCACCAGAGGGGCA 1384 29 100.0 32 ............................. ATGGCGGAAGGCCTCTTACGGATCTGGCAGGC 1445 29 100.0 31 ............................. GGCCTTCTTTTTGCTTCTTTGGGGAGAGGAC 1505 29 100.0 32 ............................. ATAATCCCAGATGGCCGGAACAGCCCAAAGAA 1566 29 100.0 32 ............................. CCCCCGTTGTTGATGAGGGCGGGCCTAGGGAA 1627 29 100.0 33 ............................. GCGCGCCTAGCCGTTTGCCACCGGATCGGGACC 1689 29 100.0 32 ............................. TTCCTCCACGATTTCCCCCAGGGGGCGGAGGC 1750 29 100.0 33 ............................. GATGTAGTCCCTGGCGTCCTGCACGATGGCCGC 1812 29 100.0 32 ............................. AGGCCGCGGAGCGCCGCGTAGAGAAGAAAACC 1873 29 100.0 32 ............................. TGGCTCCTGTCTCGCCTGGGCCGCCATCGTGG 1934 29 100.0 32 ............................. GAGCGCGGGATGTCCAGGGGGGAGCTTGCAAA 1995 29 100.0 33 ............................. GCCCTCATAAAGGGGAAGTCGGCCCAAACGCCG 2057 29 100.0 32 ............................. CTCCTGCTTGGGCCGGGGCCCCAGCCGAAGCG 2118 29 100.0 32 ............................. GTGTCATAGAGGCTAGCCACAGAGGAATCAAA 2179 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 24 29 100.0 32 GTAGTCCCCACGCACGTGGGGATGGCCCG # Left flank : TGCCCACCAAGGAACAGGTCCTCGAGGCCTTGAAGGTGGTCTACGACCCGGAAATCCCCGTGAACATCGTGGACCTGGGCTTGGTCTACGACGTGGAGATCCACGAGAACGGGGTGGTGGACGTCACCATGACCCTCACCGCCATCGGTTGCCCCGCCCAGGACATGGTGAAGGCAGATGCGGAAATGGCGGTGATGCGCCTTCCCGGGGTGCAGGGGGTGAATGTGGAGTTCGTTTGGACGCCTCCCTGGACCCCTGCTAGAATGACCGAGGAAGGCAAGCGCATGATGCGCATGTTCGGATTCAATGTGTAGGGGGCTCAGCTGGGTGGTATAGTGGGCCTCGAGGTGCGAGGGAGCCAGGCGCGTACAGAAGGCTTTTAGGCTCCGGATGTGCGCCTGGGCTCACGCACGGGGGATCTTGAAAGGCTAATCTGGACTGGCTCCCTTTACATACACATAGAGGGGGGTCGGCGGGGGTTTTTGCCGTCTGGGTCATGT # Right flank : GCCTATCCATACGCCCCTTGCCTGTTTTCCGTCGGACGGAAAGCCCTACCTCACCTTTCCCCTTGTTTCGGGGATGGATCCAGAGGGGTGCGGGGGTTTCTACCGCCTTGCCCGGTTTACGGGGCTCCCTCTTCGGATCTGGCACTGGCTGGGCCTGAGCGCACCACCAGGGTGTCGGCGATGAGGTCATGCCAGGCCTGGCGCTTAGGGTGGAAGAAAGCCCAGAGGTAGCCAAGGAGGAGGGGCAGGGTGGAAAGGGTCTTGCCTACCACCTCCCGCATAAAGGCGGTGAGCCAGTCCACAGGCTGGCCGTCCGTGCGGACCACCTTGAGGCCCAGGGCCATTTTTCCCGGGGTTGCCCCATACAATGCGGTGAAGATCACGTAGTAGGCCCAGCTGGGTATCCAGTTGAAGAGGAGGTCCTGGACGAAGGTGGTGGTTTGCGCCAGGGGGCTTATCCCGGCCAGGGCCATCAGGAGGAAGCTCAGGGGAACCAGGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCACGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 356-1912 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEMP01000173.1 Thermus scotoductus strain 8_S8 NODE_256_length_2047_cov_26.175_ID_511, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 356 29 100.0 33 ............................. CGAACCCAGTACTCTCGGTCATAAAAACACAGC 418 29 100.0 33 ............................. TGATGGGGATCAGCCGGAGACGACCGGGCTGCC 480 29 100.0 32 ............................. CCCCTCAATCAGCGCAGTCATGCGTCCTCCCT 541 29 100.0 33 ............................. GCCTGTTTCGCCAGAGCTAGCGGGTCCACACGC 603 29 100.0 32 ............................. TATGCGGAGGATGACACCAACGGCCACCCCCA 664 29 96.6 32 ............................T GACCCGGCCAGCGTCCCGGCGGGCGTACATCA 725 29 100.0 32 ............................. CATTCCCGCCCTACCTGCACGCAGACGCCCAG 786 29 100.0 32 ............................. GGCGTCCACGAGGAGGAAGGGATGAAGACTCT 847 29 100.0 32 ............................. GTTAGAGAACAAGCCCACGATGGCCTGGGCGG 908 29 100.0 32 ............................. GCCCATGCCCTTGACTTTCCGCATTCCTCCGC 969 29 96.6 32 ............................T GTGCCCGGTGGGCTGATGGGGCTGATGGGGCT 1030 29 100.0 31 ............................. TAGCAATGGGCGTCATCCAGGACATATCCAC 1090 29 100.0 32 ............................. AGAGAGCGAGCCTCAGGGCTGGAATGGACACG 1151 29 100.0 31 ............................. AAAGCGGCCTTCCCCCTCTTCCCGGAACCGA 1211 29 100.0 32 ............................. CCCCTCCGGCACGCTAGTCCCCCTGACTTTAG 1272 29 100.0 33 ............................. AGGGCCACGCCCAAACACGAACCCGGACCACTC 1334 29 100.0 32 ............................. GTTCTCCGCCGCATCCAGGACCCACTGAATGA 1395 29 96.6 32 ............................T CCCGGGCTAGCTGGCCAAACGCATCAAGGAGG 1456 29 100.0 32 ............................. ACGTCATCCCACGAGTCTATTCGCCGCCACCC 1517 29 100.0 32 ............................. AGTCCGGTGGGGGTGGCGGTCCTGTCATTGAC 1578 29 100.0 32 ............................. AACACCCAGCAATCTATGGCCTGGAAGACGTC 1639 29 100.0 32 ............................. ACCTGATTAGGGTCAGTATAGGCCAGTGTTCC 1700 29 100.0 32 ............................. AGACTATTTTCAATGGCCGCCTCGTGCGGGAT 1761 29 100.0 32 ............................. AGACGGCCCTTATCCACCACCTCAATCCGCCG 1822 29 96.6 33 ............................A GTGTCGTTCAAATACACCGGGTACAGCCCGGAC 1884 29 89.7 0 ..............C........A...T. | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.1 32 GTAGTCCCCACGCATGTGGGGATGGCCCG # Left flank : TGAGGGCCAGGAGGCCCCAAAGGGGGTACTGCCGGTTGCGGGCCCGGGGGTCGGGGATCTGGGACAGGGCTTCGCGCAGGGTCATGCCCCCTCTTTACTCCAGGAGCCGCATATAGGTCAAGTCTGCTTCGGGTCCATAGTTGGAAGCATTATAGCCTAAGTTCCGCTATACTGGGGTTACCTGCCCTATCCCTAGCTAGACGTTCAGGGCACCTTGGGGCAGGGGGGGTTCTTGACAAAACATCCCTCGCTTCTCACGGGGTTCGAGGCTTTAAACGGGCCTATTGTCTGGAATAGCCCCCTTTACAGACACATAGAGGGGGGTCAGCGGGGGTTTTTGCCGTCTAGGTCATGTG # Right flank : AGAATGTACAACCCACATTCCGCACCCCCTTCACTCCAGCAGGTAATATCGCCCGGCCCCCAGAAGGCGCACCGCGGTCTCGTGATGGGGAGCCAGGTTGAGGACGAGCAACTTGCCCCCCAGCTCCACCAGGCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCATGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 169-424 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEMP01000227.1 Thermus scotoductus strain 8_S8 NODE_304_length_1309_cov_26.2766_ID_607, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 169 36 100.0 37 .................................... TCCAAGAGCCACTCCAGGTTGAGGCGCTTGAGGAACT 242 36 100.0 40 .................................... AAGTGTACGTAGTCGACCTTCTTCACCGACTCCTTCACCT 318 36 100.0 35 .................................... CTTCCAGACTAGGGCCGGGCACTCCACGCCATCAG 389 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 4 36 100.0 38 GTTGCAAGAGATGCTTCCCCGAAAGGGGATTGCGAC # Left flank : GGGCAATATGCGTTTTCACCTGCTTATCGACCGCTCCTGCAGTGGCTTTGCAACGAGCTAAACCCCGCAAAACCCCCTTTATTCGCCATGTGTATATTCCAGCCTTCATGATTCTCACAAACCCCCCTCCAGGAGCACCGTCCAGGACGATGTTCTAAGGGGGGTACCG # Right flank : CCCCGGGTTTGGCAATATGGACGGGTCCTGGCAAACAGTATGGAAAAATTTCCTCGAGGGTGCCTGCCGTGGCTCGGGCGATGAAGTGGATCGGTGTGGTCATCCGGACGACCCAGGGGGGATCCGTGGATTACGTCCCGTTCCCCGCCCTGGGGGAGGCCAGGGGATGGGCCAGAAAGGAAAAGATGGGTGAGGCCGTCCCTTTTCCCCAGCCCAGGTGGCTTTTCCCTTACCCGGGGGAAGAGTGGTGGGTGGGCTACCAGGAGGGAGGGGAGGTGAAGGTGGTGGCCGTTTTTCCCAAAAGGCTTAGGGCCCTTCCTGATGTGCCCATCCTGTTCCGCTATGCGGAGTACCTGAAGGAGCTCATGGGCCCGGACGCCTCCTCCGACGAACCACGCGCGCGAACTAGGGAGGCTCCTCCCTAGCCCTCGAGGCCAGTACCCTTCTTAGCTACACATCGCGCTACTCCTCGGCGTGAAGCCCAGGTTGTGATAGAACGT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGAGATGCTTCCCCGAAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 1 3125-3537 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEMP01000390.1 Thermus scotoductus strain 8_S8 NODE_55_length_12171_cov_25.6494_ID_109, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 3125 36 100.0 37 .................................... CCCAGGGCCACGGCCATTGCTGTAAGCCCTACCACTA 3198 36 100.0 37 .................................... TCGTCGTACTCCTTGTACATCCACTCCTCGTAGCTAA 3271 36 100.0 41 .................................... GATGAAGCGGTAGGCGGGGAGAAGGTTCCGGCGCACCTCGT 3348 36 100.0 41 .................................... GATGAAGCGGTAGGCGGGGAGAAGGTTCCGGCGCACCTCGT 3425 36 100.0 41 .................................... TACCCTCGCACTGAGGGCATTCCTCGTACAGCTCAGCCGGG 3502 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 6 36 100.0 41 GTTGCAAGAGATGCTTCCCCGAAAGGGGATTGCGAC # Left flank : GGAGCGCTTCCACCAGGAAGCCACCCACCCCCTGCGCTTCCGAAAGACCTACGCCGAGCTCCTGGACACCCAGGCGGCAAGGCTCAAGGCGGCCATAGTCAAGAGGGAACCCTACACGCCCTATTACCTAAAGTGACCTATTCACCTTTGGAAGCCCACTTGACACGCCGCAAAGGAATGGTATCGATTGGGTAAGTATTGGTCCGGTTCATCGCAAACGGTATAAAGCCAGGATCCGTTTGACCGAGTACACCGTTACGTTCAAGTGGTATAATCGGGGTGTCCGGAAAGCCGGACGAGGATCTTGAAAGCCGATTTTCCTCTTGCGCAAGGGCAATATGCGTTTTCACCTGCTTATCGACCGCTCCTGCAGTGGCTTTGCAACGAGCTAAACCCCGCAAAACCCCCTTTATTCGCCATGTGTATATTCCAGCCTTCATGATTCTCACAAACCCCCCCTCCAGGAGCACCGTCCAGGACGATGTTCTAAGGGGGGTACC # Right flank : CCCAGGCCACCAGCCTGGGTATTTTGTTTTTATGAAGCGCCTCTATGCCATTGCCTACGACATCCCGGACGACAACCGCAGGGTCAAGATGGCTAACCTGTTGAAAAGCTACGGGGAGCGTGTGCAGCTTTCCGTGTTTGAGTGCTACCTGGACGAAGAGCTTCTCAACGACCTGCGCACCCGAGCCAGAAAGGTGCTGGACCTCTCTCAGGATGCCCTGCGCATCTATCCCGTGTCGGGCGAGGTCCAGATTTTGGGCGTGGGGCGGGTTTACGAGCTGGAGGCCTTTGGGCTGGCCTAGGCCGTGTGCAGATGTCGCCCGGCCCCGGTTCCTTCTGTGGCATCCTAAGAATCATGCAAGACCTGGCTACCCTTTGGGAGGAGTACAAACAGGCGGTACGGGCAGGAGGGGATGCCGTGGGTCTTTACCGGGAGCGCGTCTGGCCTGCCCTGCTGGAACGCTGGCGGCAGGAACCCCCCGTCCACCCTTCGCCTCAGGA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGAGATGCTTCCCCGAAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 1 1473-835 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEMP01000398.1 Thermus scotoductus strain 8_S8 NODE_62_length_11540_cov_29.1215_ID_123, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1472 29 100.0 32 ............................. TCTTTGCGGCTTTCTGGTGGGGGGTTGCGGCT 1411 29 100.0 31 ............................. GAGGCAAAACCGGTTGAGAGGAGGGGGGCAC 1351 29 100.0 32 ............................. CTCCTGAGCCTAAGCCAGAGGAGAACCCGGAT 1290 29 100.0 32 ............................. CTGACCGATGACCCGATGGTGGATTACATCGG 1229 29 100.0 32 ............................. AACCCCCAACAGCTAGCCACCGAACCCTCGGT 1168 29 100.0 32 ............................. CTGGTCAAACAGTCTTCGTTTGGGCGCTATGT 1107 29 100.0 32 ............................. AGCTGGACTGGCTGATAGCCCTGCTTGAGGCC 1046 29 100.0 32 ............................. CGGCGTTGGGAGAGGAGGGTGTCCACCGGCCC 985 29 100.0 32 ............................. CTGAACGATCTGTTGGCAAAGGGGTCCAGTGC 924 29 100.0 32 ............................. AGTTGGGACCGCTTAACGCTCAATAATCCAGC 863 29 82.8 0 ........G.T...G.C..C......... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.4 32 GTAGTCCCCACACGCGTGGGGATGGCCCG # Left flank : CCAGAGGAAGAGGTGGACGAGGAGGACCCGACCCGTCCGGGTGGCCTGTGGGACCCGGAGGGAGTGGTGGAGGGTGGGGTGGCCTATGGTGGTGATGATCCTGGAGAGGGTGCCGAGGAGCCTGAGGGGTGAGCTTACTCGGTGGCTGGTGGAGGTGGATACTGGGGTTTTCGTGGGCCGGGTGAGCGCTGCGGTGCGGGAACTCTTGTGGGAGAAGGTGGTGGAAAAAGCGGGTGAGGGCCGCTGCGCCATGGCCTGGCGCACGAATAACGAGCAGGGCTTCGCCCTCCGGCTGCACGGGTATCAGGACCGGGTCCTCAGGGATTTTGATGGTATAGTGCTGGTAGCGGTGCGCAACGCCGAGGCTATGCGAAAGGCGGATAAGTTAAATGGCATAGCCCGGTTCGCACGCGGGGATCTTGACAGTTAATCCTTAGACTGGCTCCCTTTATATACACATAGAGGGGGGTCAGCGGGGGTTTTTGCCGTCTGGATCATGT # Right flank : GTAAGGGGAGCAGTGAAAAGGCTTTTGCGCAAGCGCTAGAGGGCAAGTAGCTTCTCGAGGGCCTTGAGGTAACGGCCCTGTCAAGGAGCCCTCCCCACCGGGTTTGGGGCCACTCTCCGCTTAGGGATGCGGGCTCAAGCCTAATACCCTCCCCGGGCTAAAGCACTGGGTGTGGTGCGCGAAAGCCATCTTTCGCGAACATGTACCTGGCACCCTATGCTTGGCTAACCAGAACCGGTTTCGGAATGTTGAGGGAGATCCCGGAGCACCTATTGGCCCTGGGGGTGGACCCGGTCACCGACAGGAAGCACTCCTGGGATGGACCCGAGATGGAGGCGGTGCCGGGCCACCCCCGGGTCCTGCGCCCCCTCAACTACAGCCCGGCCACCCCTAGGAAGGGCTTCGCGGTTTTAGAACAAGTTGGGAACCCATACCCATGTCCCCACCCTGGACACCCGGGTGCTGCCCAAAGGTACAGCCTACGTCTCCGACGTGGGGAT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACACGCGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTAGTCCCCACACGCGTGGGGATGGCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //