Array 1 179604-182055 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZFU01000015.1 Nocardia panacis strain YIM PH 21724 NODE_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================================== ================== 179604 37 100.0 35 ..................................... ATGTGCTTGACGATCTGCGGCACGGTGACCCCGTA 179676 37 100.0 36 ..................................... CCTCGCCCACCCGGCCCGCCGGGGCGGCGACCCGCG 179749 37 100.0 34 ..................................... GGATGCCGCACGAATTCGGGCCGGCGGGAGAACC 179820 37 100.0 37 ..................................... GGGGTCGGCAGAGCGGGGATTGGCGGTGTTCATGCGT 179894 37 100.0 35 ..................................... CTCAGCTCGATGACGCGGCCACCGCTGTGTTCGTT 179966 37 100.0 38 ..................................... ACGGCAGCATCGTGTTTGAACGAGTTGACGGGAGGCAA 180041 37 100.0 36 ..................................... AGTTCCGCGAACACCGTCGACTTCTTGGCGCTGCCC 180114 37 100.0 35 ..................................... AAACGGTGAGCGCCTTGCGGCCGGAATCGGGGGTC 180186 37 100.0 36 ..................................... CGCCTCGTGGTTGCGGATCGGCTGGCCGGTCCGCAT 180259 37 100.0 36 ..................................... GGCGTCGGCGAGCCGTGCGGAGTCTGCATCTTCCCG 180332 37 100.0 35 ..................................... CCCGGCTGCTCGGCGCGCCCGCTCGGCCCGCCACT 180404 37 100.0 34 ..................................... GCATTTCGTCTCCCCACTGCGTCGAATCGTCCTT 180475 37 100.0 35 ..................................... GCGATCCGGACCGCGATGGCGACAGCGATCAGCAG 180547 37 97.3 38 ......................G.............. TCCTCGTCGGTGAGCTCGCTGTAGTACTTGCGCCGCGA 180622 37 97.3 33 ......................G.............. GACACCATGAGCCCCGCCGAGGTGGCGGCGATG 180692 37 97.3 35 ......................G.............. TGCGGTGGCTGGGTCGACCCCGGCAGTGGTGCCGC 180764 37 97.3 36 ......................G.............. GAGGTCTGGTCCGCTGCCTGCGGGGCGATCCTGGTA 180837 37 97.3 35 ......................G.............. GAGGATGCTCATCTATCTACCGTCCTGCCGTTCCA 180909 37 97.3 36 ......................G.............. TCGGGGTACGACTGGTACCGCCAGTAGGCCAGGGAG 180982 37 97.3 37 ......................G.............. AACGCCAGGTACACGTCGTCGGCGGTCCACCCCGCCA 181056 37 94.6 36 .C....................G.............. CCAGGGGTCGGTGAGGCGGGTCAGCGCGTGGTGCAG 181129 37 97.3 37 ......................G.............. TCCCCCAGATTGGTGACCTTGTCCTGCAATTGGTCAC 181203 37 97.3 37 ......................G.............. GCGGACGGCGAGTGTGAGCGGGCGCAGAGCGTCCATG 181277 37 97.3 39 ......................G.............. TTCGGCCCACGGCGTGTAGGCGTCGATGTCGGTCACCAG 181353 36 94.6 35 ...............-......G.............. GCGCTCGTCGGCCCGGACCTCCCGTCCCCGCGCGC 181424 37 97.3 33 ......................G.............. AGGCCGAGACCGACGTATCCGTCCGCGTCGCAC 181494 36 94.6 34 ......-...............G.............. AACGCCTCATCCGCGCTCGCCGCTCGGGTAGGTG 181564 37 97.3 36 ......................G.............. CCGAAGCCCGGTGGGATCATCTTGCGGCACTGCGTG 181637 37 91.9 36 .........G..........C.G.............. GGGCCGGAATCGGTGCCCCCGGGACCGTTCCCCCGC 181710 37 86.5 34 .........G..........C.G..A...G....... TTCAACCCGTGGTCCGGTGGCACTGGCGGTCTGA 181781 37 91.9 54 .........G..........C.G.............. TTGGCCCGCAGCGCGGTGGGATCGCCGATATGCAATGCCGATGCCCCGGTGGCG 181872 37 91.9 37 .........G....C.....C................ TGCACCTGCTGCGGCCCAGCCCGCAGTGCGCAGGCGT 181946 37 89.2 36 .......A.G........A...C.............. AACACCTGGTTCGACGAGGCCACCCTCAACGCGATG 182019 37 78.4 0 .......C.G.T..........G..A...G....GT. | ========== ====== ====== ====== ===================================== ====================================================== ================== 34 37 96.5 36 GTGGCGCTGAGCCGTAAGGCTCAGCGAGGATCTCAAC # Left flank : GGAGTACGCCGGACCGCCGACACCACGACACGAGTCCGATTCCACCCCAACGACGAGTGGCTTCTGCTGCACGCTCGATGGACCCGAATCAGCAACGGCGAACGCCCCCAAGCACTCATCGACGTCACCCCAGCGACTCCGATACCGGCTGCCGTGACGAACTGCCGGGAATGCGAAGCCATGGCAAACCGGAGAACACCCCGAAGATAGCTGCACCGGAACTCGAAGTTCCCTGGTTCGACGATAATAAGATATGAACAGTTTCCGTCAGCTCGGACCGATCGATCTTCAACGTTTGGCACCTGTTGCGTTCAACGGCAACGGATCCGACAGGGGCATACCCAGCCCGATAGACTCCGGTCGGCAGCCGGTTCGGAACCCGTAGTGCAGCTTTGAATACAGGAAGGTTCCGAACCACCGACCAGGGATTACGGCGGAACCGTGTCACAATTCAGCGATTCAACTGGTAGCGGAATCCAACAAACCCCAGGTCAGCCAGG # Right flank : CAACGGGACAAGAAGCGAGAGCAACGATGGGATTGGACGACTGATGGTGTTGGGGGCGCATAGCGCACATCAAATACCTACGGCGAGTGGCGGGTTGACGACAGGACCACGCCACAAGCTCGGTACACATTGCCGGTCGACGGCGGAGTGGGCTGCGCGGTTCGCGGCGGTATTCGGTGCCGGCGAGTTGGCTTATGCGTTGGGGTTGTTCCATGACGCGGGGAAAGCCGGTCGGGCGTGGCAGCAGCGCCTTCTGGTGGTCGAGGGGACCGATAACCGGGTTGGGTTGCCGCACAAGGAGTTGGGGGCGCGGCTGATCCTTCCGACTGCGGGGCTGGCGGCGCTGGCTGTGCTGGGTCATCACGGTGGGTTGACGAGTCCGCAACGGCTGCTGGCGGTTTTGAGCGAGGCTGATTCCGTCGATGATGACGAGATCGCGGCCCGGTTCTACGCGGAGGTCCCGGAGGCGGTGGGTGTGCGGTTGCGGCGGGGGTTGTTTC # Questionable array : NO Score: 2.59 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGCTGAGCCGTAAGGCTCAGCGAGGATCTCAAC # Alternate repeat : GTGGCGCTGAGCCGTAAGGCTCGGCGAGGATCTCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-16.90,-15.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-37] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 2 191472-192090 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZFU01000015.1 Nocardia panacis strain YIM PH 21724 NODE_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 191472 37 100.0 36 ..................................... CACCGCCGTATTCGCCTACGAACTCGGGTTCCTGAA 191545 37 100.0 36 ..................................... GGCGTAGTCGTCGGCCGATTCGCCGGGTTTGCGCGG 191618 37 100.0 36 ..................................... GCGTTCCCGGTTCTCGTACGGCAAATCGGCGCGGGC 191691 37 100.0 35 ..................................... GGGCAGTGCGCAGCCCGACAGCAGCGCGGCGATGT 191763 37 100.0 36 ..................................... TCGCAGGCGTGGTTCGACACCTACCGGCTCGCCGCC 191836 37 100.0 34 ..................................... GCTTTCATCCGCACCTGCGTGCGATACAACCGGC 191907 37 97.3 37 .................A................... GCTGTCCGATACTTGAGCGACGGCGGCTCCGGCCTCC 191981 37 97.3 36 ..................................C.. GAGGAACGATCGCGCACTCAAGGTGAACACGTGGTG 192054 37 86.5 0 ...A..A......T..T...............G.... | ========== ====== ====== ====== ===================================== ===================================== ================== 9 37 97.9 36 GTGGCGTCGAGCCGCGAGGCTCGGCGAGGATCTCAAC # Left flank : CTCTCCAGAACAGTTATCATGTTGCACGCCACATCGGAGCGGAATACGGGTTTCGGCACCCATAGCCGATGCTCGCCGAGCAGCTTCGAACCGTGAAAGCTGTTGCCCTTGAAGTCGACCTAACGTGCTATTCGAACGCAGCAGATCGAACCCCAAGGCCGGTCCGGCTGATCAGCTGCAATGAAATCGGACAGGCGGAAACCCCGTCCTCACCCACCTTGGCCGCGTTGAGGAACATCACCGCCTCATCAGCGTGAACAGTTCCGACAACTTGGACCGGCCAGTCTTCCAGCGGTTGTCCCTGTTGCATTCAACGGCAACGGATCCGACACCAACATGACCCAGCCGATAGAGTCCGATCGGTAGCTGGGTTCGGAACCTGTAGTGCAACGCCGAATGCAGGAGGGTTCCAAACCATCGACCAGTGATTATGGAGGAACCGTGCCACAATTCAGCGATTCGACTGGCAGCGGAATCCGACAAACCCCAGGTCAACCAGG # Right flank : CGATGTCCGACGAACACCAACACGCTCTGACGAATGGTGGTGCGGCAGAGTCGCATCGGGCACGTTCACCTGCGAAGACATGGTGATCGGCGTTACTTGTCGGTGGCATGGTGCATGATCCTCGGCAGTGATCGCCAGGGGTAGGTCGAGGTTGCTCTGGGGGTCTCGACAAGAAGAACATCACGGTTCCGAGAGGAGTTGTTGTGCCTGTCGTAGTTCAAGTCGCCGGTGACGGTGCCTTGTTCACGCAACCCGGGCTGACTGCCGAGCGATTGTCGTATTCGGTGATGACGCCTTCTGCTGCGGTGGGGGTGCTGGAGGCGATCTTCTGGAAACCGGAGATTCGATACCGAATCGAGAAGATCGAAGTGCTTCAACCGATCCGGACGTTCACTTTGCGGCGCAATGAGACCACCGATCTCGCGCCCCTACTCGAAGCTGCGAAGGGAACCAGGACCGTCGATACCGCAGCGAATCGTGTGCAGCGAAATGCGGTGTGT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGTCGAGCCGCGAGGCTCGGCGAGGATCTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-15.70,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 3 197939-198625 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZFU01000015.1 Nocardia panacis strain YIM PH 21724 NODE_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 197939 37 100.0 36 ..................................... CCGGGCGTGACCACGGGGCCGCTGCGGGGGCGTGGT 198012 37 100.0 34 ..................................... GGACGGCGGCGCTGGTCGGCGTGCCGGGACGCGG 198083 37 100.0 34 ..................................... AGCGTCCAGGTCAGCCAGTCGGAACGGTCCTCTA 198154 37 100.0 35 ..................................... GCGGAGGCGGTGGCCGAGGGTGTACGTAGGGCGAT 198226 37 100.0 35 ..................................... ACAATCACCGCGGTCAGCCAAGCTGTGCTGCCCGG 198298 37 100.0 37 ..................................... TCCGGTGAGGCATTCGAAGAGGACGCAGGTCAGTGAG 198372 37 100.0 34 ..................................... TACCTCGTCGACGGCGGATCGGTGCTGGTGGCCT 198443 37 97.3 35 .....................T............... ACCACGGTGACCGCCAACGACGGTGACGCGGTCCA 198515 37 94.6 37 ................GG................... TTGGGCCTTGTAGTCCACGCTGACGATGGTTTGACGG 198589 37 91.9 0 .................G...........A..C.... | ========== ====== ====== ====== ===================================== ===================================== ================== 10 37 98.4 35 GTGGCACCGAGCCGGAACGCTCGGTGAGGTTCTCAAC # Left flank : GAAACCACGACACCCGAAGGCGCTCAACGACTCCGCCGCGTAGCCAAAATCTGCGAAGGCTACGGACACCGAGTCCAGAAATCCGTCTTCGAAATCACCTGCACCCCAACAACCCGCCTCCAACTCGAAGCCGCCCTCACCCGAACCATCAACCACACCCGCGACAGCATCCGCGTCTACCAACTCGACCGAGGTGCCTTCAGCGCCGCCCACCACCTCGGCGCAGCAATCGAAGCACCACATGACACACCATTGGTCCTGTGATGCAGCCTGTCCCCGACTCACGTGGATATCGAATTCCTTTGGTACAAGCTGGAGTATGGCCATCACCACCAGTCGGGCAGCCACGATCGACATGACTGCCGCATAAGTTGGGAACGTCAAGTGCGACGTCGCTCCCAGGAAGGTACCGAACCAGCGATCAGGGCAAATCCGGGAATTGCTTCTGCAATCCTGCTCGAAAGGTCTTGTGTTGGCCAAAAAGTCGCAGGTCATCCAGG # Right flank : CGGTGAATGGGAGCTGACGATGGCCAAGGCCGGTCGAGTGTGGTAACGGAGCCGTATGGGCTCGACGCCGCCGATCGGGAGTTCCGTCGACGTACGTGTTTTGTCAAATGAGAGGCCCGCTCAGCAAATAGTCCGAGTCCCATCACGACTGGTTTGCTATCCGATTGCCATGGTCTTGAAATCGCTTGCGTTCCGGCGTGTCGCCGCTCCGATACTCCCTCTGAACATCTGCGGTTTCAAACCCAACGGGCCGCCCGACGAAGCACCGAGTTGGCGGGCGCCCCGTTCAGGCCGCCTCGCAGCAACGAGCACACAGGCCATAGGTGTCGACGTAGGGAACCAAGCAGAGCTGCGCGAACGTACTCAGCCCTATGCCTGCGGAGAGCACCGGAACAGATTTTCACAGCCTAGTCAGCCGGATGGGCGATGCAGTGCCGTTGCCACCATCCGCGTTGTAGTTCGAGTGGGGCCAGCATCAACAGCCTGCCCCACTCGAACTA # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCACCGAGCCGGAACGCTCGGTGAGGTTCTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.80,-12.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 426765-426972 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZFU01000041.1 Nocardia panacis strain YIM PH 21724 NODE_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 426765 29 100.0 32 ............................. ACCCAGGACACTCTCAAGGACAACATCCGCAA 426826 29 100.0 32 ............................. AGACCGTCGCGAATGTTTCCGATGACGACCGT 426887 29 93.1 28 .T..........................T GGTGTCGGAGATGGTGAAGGGCACTGGT 426944 29 75.9 0 CCA.G........GG..A........... | ========== ====== ====== ====== ============================= ================================ ================== 4 29 92.2 31 AGGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : CTGGCCCTGGCCTTCGGCGGCCTACTCATTGCCCCGATCGGCATAGCCGAAGCCGGCACCGCCCTCCTACAACCCGCAATCCTCGCCGCAGGTCTCGGCGTAGCCCTACTGTCCTCGGTCCTGCCGTACTCACTGGAACTAGAGGCCCTGCGCCGCATCTCCCCTCGAGTATTCGGCGTACTCATGAGCCTGGAACCCGGCGCAGCCGCCCTGGCCGGGGTGGTCCTGCTCAGCCAGCCGATGAATATCTCGCAGTGGGCCGGAATCGCTTGCGTGGTAGCCGCTTCCATCGGTGCGACCCGGATGGCTACACCATGACGGCCTATTCCTCGCTCGTATGGTCTGAATCCCGAGCAGTCGGGAGCGAGCGTTGCAACTGCCGCGTGGGCGGTGTGCGAACTTGGATATGGATAGAGTTGGGTTCCGCTGGTGGTCAACAGTTGTGGGTGAAAGTGAATGAAAAATTGCCTTAGTTGATGAATACGCGCTGGTCAGGAAGT # Right flank : CGCTCTGGTGGCGGCTGCGGAGATATCTCCGCGATGCTCCCTGCCCGTATGAGGATGGGCTTCCCGCCTGGCATGCCCACTCCGGAAGAAATCATTCTTTGCGCGAATGCAGGATGAACTCATCGACTGCGCGGGACGGATTCGCGCAGCGGACGCTTGAAAGGCGTTGCGAATTCAGGCGGTTGCGACAATCGTAAGGGCGTCGTCGAGGATGGCCAGTGCCCGCCGAGCTTCCTCGGCGGTAACGGTCATCGGCGGAGTCACCCGCAGCACATTCCCATGCAACCCACCTTTGCCGACCAAGAGCCCACGTGAACGGCATTCCGCGAGAACAGCATTCGTGCGGGATACCGCCGGGATCTTGCCGGGCTCGACCAATTCCACCCCGAGCATCAGTCCCGCTCCCCGCACCTCGCCGATCAGGGGACACCGCTCGGCGATCTCGCGTAGTCCCGTGAGGAGGATCCGCCCTACCTCCGCCGCATTCGTCTGCAAATCGT # Questionable array : NO Score: 5.47 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 17749-18578 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZFU01000036.1 Nocardia panacis strain YIM PH 21724 NODE_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 17749 37 100.0 35 ..................................... TTGACCCGCTGGGTGTTCTTGAAGGCCACCGGGTC 17821 37 100.0 35 ..................................... AACGAGGAGACCGGCGAATTCTACGACACCTATAG 17893 37 100.0 35 ..................................... ATGGAGCGCATGGGCTTCACCGCCACCCCGGATGG 17965 37 97.3 35 ................A.................... ATGATCTGTTGGACGCTCGATAAGCGTCGGCCGGA 18037 37 100.0 34 ..................................... CGTCTCGGATCCTGGCGATGTACTCGCGGCTGAA 18108 37 97.3 36 .........................A........... GCGCCCTGAATGAAGGCGTCCCACTCGCTGGCGCTG 18181 37 91.9 37 ............A.C.................A.... GTCGTCGACCGTGGCCCGTGATCGGGCCGTCGACTGC 18255 37 94.6 33 ..............C.......G.............. ACCAGCCGGTGAACGTACGCGGTTGCCGCAGTG 18325 37 94.6 34 ..............C.........T............ CACCGAGACGACGACGTGACCGGCGTATCCGGCA C [18343] 18397 37 94.6 34 ..............C...T.................. CTGTGGTGTCAATCCGGTGGCGGCGGCAGCGGTG 18468 37 97.3 36 ..............C...................... GAGACCGGCCAGCGCAAACCACGTGTCAGCCAGGTC 18541 37 94.6 0 ..............A.A.................... | C [18572] ========== ====== ====== ====== ===================================== ===================================== ================== 12 37 96.9 35 GTAGCGCTGGACGTTCGCGTCCAGCGAGGATCGCAAC # Left flank : AATATCACCGACCTGCAAATCGCTTCCGGCGCTATGCAATGGACCAGCAGCCGACTCACCGCCACCCTCCTCGACTGCCATCGCAACGCCCGCGCGGACGCCAGAGCACAGATCGAAAACCTCGCCGCGAAATCCGATCCCCATATCCGCGACCAACTCCAGCGAGCACGCAAAATCCCCGACCCTCAAAGGCATCTCGACAGCCAACAAATGACCGAAGACGAGATCCAAGCTGCTGACGACGCCTACTTCCACAACCGCAACCGCTACGGCGGATGGAACGACCGACGATAGGCCGCACGTCTCGTCCGCAGCCCGAACCGGCGGGGATCGAGCGTCGACTCGACCGAAACCCGCGTGCCGGGACCCGGTTCGGAACCCCAAGTGCGACTTGAATACCAGGAACGTTCCGAACCAGCCACCAGCCGACTCGCCCCACCACGACCACATCGAACACCGCCGGATCATCGCGGGAAGGAGAAAAGCGCAGCTCAACCAGG # Right flank : CGCGCGTCGCCGGACGAGGCCGGCCGCGGCAAGCTCCGCCCCCGCCGGACCGGGCCTCAGCTTCGGTCGAGCAGTCGCGTCCGCCATTTGCGTCCACTCCCCCATGGATCGATCATTTCCGCAGGTCGATCCGTGTGTTTAACGGATGTGTCCCCCTCCGGACACAGAATAACAGCAGGTCAGGGGCTTGATCGCAAGGTTTCGCCTCCTCTGCGTCCACACAGCGGTCCACACACAGGGAATCTGAGGGGATTCGGCCTGACGCAAGGACCCATGCCCCATGGCAACAACTCCCCGTGTACGAGTCCGCAAAGACGGCACAACCTACTCACAGGTGCGCTACCGCATCGAACGTGACGGCACACTCGTCCAAACCTCCCAGTCGTTCGACGACCACGCCGCCGCGATTCGGTTCGCCAAACTCGTCGATCGCGTCGGCCCGGTCGAGGCCGAGCGCGTACTCGCCGCGCAACTCGCCGCGGTGCCCGAGGCGGTCATGT # Questionable array : NO Score: 2.65 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCGCTGGACGTTCGCGTCCAGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-14.80,-14.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-25] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 2 21409-21139 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZFU01000036.1 Nocardia panacis strain YIM PH 21724 NODE_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ==================================== ================== 21408 26 96.2 35 ...........A.............. GCACCCACATCGTCGGACCACGACCGCGATTGGGT 21347 26 100.0 35 .......................... CCGCGATGGGCGCGCAATGCTATTCCAGCGCATGC 21286 26 96.2 34 ........C................. AGACAATCCGGCCGCGTGGCGGCGTGTCAACGGT 21226 26 92.3 36 ....C...C................. TCCACCGAAACCGGTGCGCCGGTGGCGGATTCGGTC 21164 26 69.2 0 G.CTCTG.C.............T... | ========== ====== ====== ====== ========================== ==================================== ================== 5 26 90.8 35 CGGCTCCGTACGCGCGGGGATGGTCC # Left flank : GGAGTCCAAACGCGCCTACGTCAAGGACTACCGACTGTTCTTCACATTCCTGCGTGAGCGTGAAAAGTGTTGGCAACATGCCGATTACGAGGACGTCGACGACTGCGAGTCGTGGCGGCGCCGGTCGCCGGACAATCCGCGCCGCATCGGCGGCAACAAGTGGGCATGGTGCGCGTACCGTCCCAGAGTGGCGGGGCCGGTTCCGCATCGGCGGTGACCGTGGTCGCGGTTGTCACAGCGAATAACACCAGCAGGGGCACACGGGGCAGGGCACGACGCATGGACGAACTCCCATCCTTTCCGAGGGGCGAGTGGCCAGCGGGCGGCTCGCCGGTCACACACGACCGGAACACATCGTGACCGGTGTAAACACCGTTCCCGCAGTCCACAAGCAGAGCGAGTTGCCGTTCACCTTCCTCTACAACGACAGATGCGCACCGTCGGCGTCAACCGAATGAAAATCGACAAACTGCACTGTAACGCTGCAGGTCGACAAGTGT # Right flank : TGCTCAGCTGCTACCGCAATGTCGCCGGATCAGTTGGCCCTGTACGTGCCCCGGTGGCCCCGGTCATCCGTACTCGGTCTCGGTCAATACCCACTTTTGCGTGTTGCACTCGCCTAATACTCCAGCCGGACTTCATGATCAGGTGAGGCGGCGGGATCGTCGCTGGTAACGGCTGGTGTGGGCGCGGTGTTGGTGCCGTCAGCGCCAGATCGACCAGTGCAGTCGGTAACTGATGGTGTGGATCGGTTGCAGCAGCAAGTCCGCGAATAGATGCCGGATTTCGTTGCGGGTGATAGGAGGTTCTCTTTATTATTTCAGTATCCACCACCCGTGTTGCCGGCAGTGAAATACCCTGATGTGCCGGTAGTAGGAGCAGGGGAAATAGGCTCTATAGTGTCGCACACTGTAGACGGTTCATTTGCTCGGCTGGTCATCCGATCTACCAGTAGATAAAACCCGCCTGAAAGAACCGTCAACGCGATAACAGCGGCTAGGACATA # Questionable array : NO Score: 3.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.54, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGGCTCCGTACGCGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.10,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 21835-20886 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZFU01000010.1 Nocardia panacis strain YIM PH 21724 NODE_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 21834 30 96.7 35 .........T.................... TGGCAGGGGCAGTCGCATTCCTGGCTGGGCGCCCA 21769 30 96.7 35 .........T.................... GGGAAGTCCGGCGCGGTGCAGGCGTTGCTGCTCGG 21704 30 96.7 35 .........T.................... AGCTGGCCGGCGACATGCTGATCGAGCTGCTGACC 21639 30 96.7 36 .........T.................... CTGGTCATCGGCCTGCGCCAGGCCGGCCCGCAGCAG 21573 30 96.7 38 .........T.................... AGGCGTGAACCGACCCGGGGCCACGGCACGCGGACCAC 21505 30 100.0 35 .............................. GCGAGCAACGACGATGATGATCGCGGCCGCGAAGG 21440 30 100.0 34 .............................. CTTGCCACAGCCGTCGGCGCTGCGCCGCCGCCAC 21376 30 100.0 34 .............................. CAGCACGGCGCCTGCGGTCTCCCGCACCACCAGC 21312 30 100.0 36 .............................. TCAACCTCAAACCCGCCGGATCGGCGACGCCGGTGC 21246 30 100.0 36 .............................. CTTCGTCTCTATACGCGCATAGACGTAAAGCGGCCC 21180 30 100.0 35 .............................. GCATGGAGCGTTACGAAAGTCCCTCGGCCACAGGA 21115 30 100.0 40 .............................. TGGTTCTGGCCGGAGATGATGTAGTACAGGCGAGTCCCGT 21045 30 100.0 34 .............................. CCCGTCTCGCGGTCGATACCACTGCCGCAGTCTC 20981 30 96.7 36 .........T.................... GCGGCTTCGGGGTGCGCGCGCAGCGCGGTTTGGTAG 20915 30 86.7 0 .................A.........TGA | ========== ====== ====== ====== ============================== ======================================== ================== 15 30 97.8 36 GTCCGCATCCGCCCTACGAGGGCTCGCAAC # Left flank : GTGCTGTCTGTCACTGTGATGAAGCTGACAGCGCGCAGCAAGGCTAAGTGACGATTTGGCCCGATGTCAAGAATCCAAAACCTACCGGAAACAACGAGGAGCGTGCAGCCACGACGAACGCCGACACCTGTGGAAGGTATTGTCAGAGAAGCTCTTACATCACCCAACCGGGATCCGCCACCAGCCGATGCCTGCATGGGATCGCAACTTGTTCGCGGTCGGTTTTCAGACGCCTGCCTCCATCAGCCCTCCGAGGGTTGCCGTCCACCTCACTCGAAGCGCTGTCGCGTCCGACAAACCTACTCGACATCCGAAGCCCTGCAGAGCCATGACGCGAAATGAAGATCAACAATTCGACGCTCCGAACCCGGTCTCGTTCCACTACGGTGACATCCGAGTGCAGCGACACGCCGAGCTCACGTGCAGGACCGAAGGTTCACTGCAGAAACTGGAATCCAGTCACTTGAAAAGCAGTCTTCTACCAGTGATTTTACCCTCGG # Right flank : GGTTCCCCCGAGTAGTGGACACCGGTTTGGCAGGACCGCCGGTCGTCGAGAGGATGGGCTGGATATGCCAGCGAAGTACGGTGCAGCGACCAGGGCCAAAGCCATGCGGTTGGTCGTGGAGCACCGCTGACTACGACAGCGGGTGGGCCGCGATCACCGCGGTCACGTCACGCCAGGGTATGACCTGGGGACGTTGCGGAAATGGGTGCGGCAAGCCGCGGTCGACAAGGGGGAGGTCGGGGAAACTTCGACCGAGGCCGCGAAGATCATCCGTGAGCAGGAACGCAAGATCGCCGAACTTGATCAGACGATCGAGATCCTTTCCGCCGCAACATCTTTTCGCGTGGGCGCAAGGCCCGCGACACCGTTGGTGGTGAGTTCGTCGCCGAAGACCGTGACCGGTTCCCGATCACCGCGATCTGCCGGGCACTGTCGGCCCGAGGCGTGCCGATGCTGGGCTGTGCGCAACTGCCGGGCTGATCTCTCACGCGACCTACCAA # Questionable array : NO Score: 3.07 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCATCCGCCCTACGAGGGCTCGCAAC # Alternate repeat : GTCCGCATCTGCCCTACGAGGGCTCGCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.60,-7.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 32780-33081 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZFU01000010.1 Nocardia panacis strain YIM PH 21724 NODE_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 32780 30 100.0 40 .............................. ATGACCGGCTGTCCCGCCTCGATCGGGCTGGGCTTGCGGT 32850 30 100.0 42 .............................. CCGAATCCCGCGCCCACCAGGTCCGACAGGTCCGGCGTCCGC 32922 30 96.7 36 .........................A.... TGATCGAGGACGCCGCCCACGCCATCGGCGCGGAAC 32988 30 96.7 35 ..............G............... GGGTGAGTCTCAAGATGTACCGGCAGCGTCAGACA 33053 29 80.0 0 .......CA..-...T......T.....G. | ========== ====== ====== ====== ============================== ========================================== ================== 5 30 94.7 38 GTCCGCATCCGCCCTACGAGGGCTCGCAAC # Left flank : CGGCCCCGTAGCCGGAACCCAGCACGATGCCGCTTATCCTCGATGCAGATGTGGGCGGTGAATCGGACGACGCTCTCGCCCTGGCTGACGCCGGAGGGTCGAGTGTACTGTCCCGGATCTGGTGGTGAGCATGTACGTCATCGTCGTCTATGACACCGCATCCCAACGAAACCCCCACGTACTCAAAGCATGCCGCAAATACCTCCACCACATCCAACGCAGCGTCTTCGAAGGAGCCATCAGCCCCGCCCAACTCAAACGCTTCCGCGCCGAAATCGTCAATGCCATCGACCCCACCTACGACAGCGTGCGTCTACACCTACCCACCCGGCGCCACTCCCCAACGCGACGAATGGGGCACCCAGCAGTCGGCACCCTCCGACATCCTCTGACCCGAACGCAGCGACACGCCGGAGTCTTATGCAGTACCGACGGTCCGCTGCAAAACCAGGACACACTCGGCTGGAAAAGGAACCTTCTGCCAGCAGCTTTACCTTCGG # Right flank : CAGATCGGCACCATTGCGGAAGTCGAGCCAGTGGCCAGAAGGTAGATGCAAGACACGAAGTAGCCACCCACCCGAGCAGGCTTGAAGACCAGGGCATCATCGTCTAACGTTTCGACCCACTCGATCACCGGAAGGTGGCGTAAGCACAATTTCGAGGGGCTCAAGTCCCCTCTCGCGCACAGAATCGCGGTGTTTACGCCACATTTTGCGGACCGGTGTCGACCGTCAGGTAGTGCTAGCTGGCTGCCGTGACAGAATTCCTCCAGTGCGAGCCACTGTGGGGTGGTCAGCTGGTTGGTCGGCCGGGGCGCTGCGGGGCCTGCAGGAGGGACCGTCCATCTAGATCGGTTCATCGACCTGATCTGATATCCCTGCGTTTCATTGCGGCTACCGCGGGGATGGCGGCCCAGGCCAGGAGCGCCATCATCGACATCGCCGCGGCCAGACCGAAATCGGTGTTGATGCTTCCGAAAACGGCGATGCCGACGACGAAACTGAAT # Questionable array : NO Score: 2.72 # Score Detail : 1:0, 2:0, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCATCCGCCCTACGAGGGCTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.60,-7.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //