Array 1 947-58 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHAU01000269.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N18382 contig_284, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 946 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 885 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 824 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 763 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 696 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 635 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 574 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 513 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 452 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 391 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 330 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 269 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 208 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 147 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 86 29 96.6 0 ......T...................... | ========== ====== ====== ====== ============================= ====================================== ================== 15 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GGTTTGCCGTATCTTCGATCATACCGGAACGGTGTGTTCCCCGCGCCAGCGGGGATAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 28875-30000 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHAU01000079.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N18382 contig_79, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 28875 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 28936 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 28997 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 29058 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 29119 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 29180 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 29241 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 29302 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 29363 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 29424 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 29485 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 29546 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 29607 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 29668 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 29729 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 29790 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 29851 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 29912 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 29973 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 50-731 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHAU01000159.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N18382 contig_161, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 50 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 111 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 172 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 275 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 336 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 397 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 458 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 519 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 580 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 641 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 702 29 96.6 0 A............................ | A [728] ========== ====== ====== ====== ============================= ========================================================================== ================== 11 29 99.4 36 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCAGCGGGGATAAACCGTGGATTATCTGTATTTTACGGAAGTGGGCGCGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.28, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //