Array 1 350516-351742 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031780.1 Yersinia pseudotuberculosis strain FDAARGOS_342 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 350516 28 100.0 32 ............................ GAAGTACGGTCAGGAGCCGGGGGTGCAGTTTT 350576 28 100.0 32 ............................ GTTCGAAATTATCCTTACGTGCAAGGAGCCGT 350636 28 100.0 32 ............................ GTTCGAAATTATCCTTACGTGCAAGGAGCCGT 350696 28 100.0 32 ............................ ACCATGAGAGGAATGAGAATACTGACGACATT 350756 28 100.0 32 ............................ TGAAACAATAGCAAACAATAATTCAGGTATTC 350816 28 100.0 32 ............................ TTATCAGGGTGAGGATAGACACGACCCCAAAA 350876 28 100.0 31 ............................ ATGCCACAAATGAGTTTGTTTCCATAGCAGG 350935 28 100.0 32 ............................ TGTAGCTGTAAATCCAACTGGCATTGGAGGAT 350995 28 100.0 32 ............................ ACCCACACGCCGCCTGCCCATTCGCCGGTAAC 351055 28 100.0 32 ............................ GATCTACTTCGCGATACCGCCCATCGCTGGCT 351115 28 100.0 32 ............................ TGTCCAAATTTAGGAATATAGAGAATGTTTTT 351175 28 100.0 32 ............................ ACGTAATCCACAACGAAATATAATCTAGTGCT 351235 28 100.0 32 ............................ AATCATCAGTAACGTGTGTTCTTTCCACAAGA 351295 28 100.0 32 ............................ ATTTGCATAAACTTCACACGCTCGACTTAAAT 351355 28 100.0 32 ............................ ATAGTGCCGGGGCGATGACAAGAGCAGTGATC 351415 28 100.0 32 ............................ GAAAACGGAACATTACAATCCGGCGGATTACA 351475 28 100.0 32 ............................ ACTCGATATCCGGTGCCGCACTTACATCAATA 351535 28 100.0 32 ............................ CTATTGTGTTGAGCAACGGCGCGGAGCTGCAC 351595 28 100.0 32 ............................ CTATTGTGTTGAGCAACGGCGCGGAGCTGCAC 351655 28 100.0 32 ............................ GGTCAGACTATGCGCGATGGATTGATTAAAGT 351715 28 92.9 0 ........................T.G. | ========== ====== ====== ====== ============================ ================================ ================== 21 28 99.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CATTCAGGTTATATTTTATCAGGGATAATAGGTGAAATAGGGGGGAGGGGCTAATGGTAAAAAGCCTCTTATTGATCCAATATATAATAATTCAGATAAAACGCGCATTGATTAGGATGTTTCAGACATTCGCGTGGGAATTTTCTTACTTTCATCACAGGAACCTCATTAGAGCACGCCAATATTCTTTTTTAATGTACCTAATAACCTCATTTAGTTAATAATCCAATTGACCTGAACCCTAAAAACGAAGCTATGGCAGAGTCATGCCCTGAGAGCGTTTCAGGGCGTTGGTACAGCAGATGATAAAGATCACGATAATAACGCATGGGGATTCTTAGCCTATTCGCATCAGGGGAATCATTTTTTGACCCTATTTTTTTAGCTATGGCTAACTCATTGATTTTATATCCTGCTTACCGAGGGTTAAAAAAAATCATTTTTTACCCTTTGGCGAAAGAATTATTTTACAAACAGTCTGTTACCCGTATTATCTTACT # Right flank : AGGGTCACTGTTTGTGCACCAGCGCGGCCCCGGCCTGATCCTCTTGCTGGTAGGCCAACGCCACGACCAACGACTGCACCAGACAGAGCGTGGCTGATTGAGATCGGAAGGCATCTACCTGAGCCTCTTTCACCACAAAACAGAGATCGCTGAACGTGGCGAGCGGGCTTATCTGGCTGTCAGTAATGACAATCTGCCGGGCACCCGCGCTAGCGGCTATTTCACTGACCATCACGGTCTCTTCGGCGTACGGAGAGAAACTGATAGAAACCACGATATCGCGTGCTTTAATGCCGTTCACCTGCTCACGTAACATCCCCCCGAGGCCATGGAGTTGCACCGGGCGACATTCCAAATGGCTGAGTGCGTAGGTCAGATAGGCGGCCACGCTGAACGAGCGGCGCAGGCCCACCACATAAATGGTATCGGCCTGAGCAAGTAGTTCCACCGCGCGTTGCAGCATCTCTGGTTCAGTACGTGCCGCCAACTGTTGTAGTGCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1685748-1684459 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031780.1 Yersinia pseudotuberculosis strain FDAARGOS_342 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1685747 28 100.0 32 ............................ TGCTGAGATTCCAGTATTCTGAATTAATTTAC 1685687 28 100.0 32 ............................ TCTAGTACGCCAATTTTGTGATTCTTTATAAT 1685627 28 100.0 32 ............................ CTTCAAAATAATGTTAATGCTAGGCTAGAGGC 1685567 28 100.0 32 ............................ CAGTTGAAATACATGTTCAAGGAAATGGTTTA 1685507 28 100.0 33 ............................ GGTTGTTCAGGGTAAATAAATCTCACCAGCCAT 1685446 28 100.0 32 ............................ TGAGCGATGGAGTGCCGCAGCTACACAACAAC 1685386 28 100.0 32 ............................ TTAACAGACTCAATAAACTGTAGAACGTTTTC 1685326 28 100.0 32 ............................ ACGTAATCCACAACGAAATATAATCTAGTGCT 1685266 28 100.0 32 ............................ GGCTTCGTTGCCCCACAACGCGGGGACCAACT 1685206 28 100.0 32 ............................ AGACACAGGCGAAACCACATTCTATATGAATC 1685146 28 100.0 32 ............................ AATTTATTATAAGTGGAAATAATACTTGACTT 1685086 28 100.0 32 ............................ TCAAGTACCTAGGCATTAAAGTAATTAATTCA 1685026 28 100.0 32 ............................ AAGTAGCAAAAAGATTTTTAGTATAGATAAAT 1684966 28 100.0 32 ............................ AGCTGTAGGTTCGTCTGCGTCTGTTATGGCCC 1684906 28 100.0 32 ............................ ATCCAGGCATCAGACCCGACAGTTGTGACCAG 1684846 28 100.0 32 ............................ AGCCCGCTGGCTTACGACCCGAAGGGCGGTGA 1684786 28 100.0 32 ............................ TACTTCCCTGATCTGCGCCAACGGCTGTTTAT 1684726 28 100.0 32 ............................ GTATAATTATTAGCATTATTTAATGTTGTTTG 1684666 28 100.0 32 ............................ GAGCATTCCGCGCTCGTCACGCGCCCTTACTG 1684606 28 100.0 32 ............................ GGTATCGACAAACAGGCACATATACAGTTGAT 1684546 28 100.0 32 ............................ TTACACGCTGGACGGCCAGGGAGACGAGAGCT 1684486 27 89.3 0 .....................CC.-... | T [1684461] ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TATAAGGCAAGCTCACGCTCATCATTAAGTTTATCAATCCGGCACAGTCTCTGTTGCCGGATTTTTTGTATTCAGAAAACCAGGTCAGAGCGTATTGCCGTGCGGCTACAATCTCAATCGTGATTAGGCTAGAAAAATGAATCGAGGTGATGAACTCCAGCAGGCAGACCCTCAACTCGTCGTGGGAAAATACCGGATAGCGGATAATGCCGCCCCTAATTCGCAATAGACGATACCGAGTAACCGTACCCATTAGCCATAGTATTACTTTTTTAGTTATTTAATTTGGCAGGCCAGAAACATGGGCCACGCCACCACCACCCTCCTCAGAAGAGTAATCATTAGGGTTACGTCCCCCCCGATTCTTGTGACCCTCTTTTTTTCACTATGACTAACGTATTGATTTTTATGCTACTCAGGTATTTCACTAAAAAAAAGGTTTTTACGCATTTTGCGCCATTGCTCATTGATAAACATCGGGTTATCCGTATTATCTTACT # Right flank : TCTCAGCTCTCTGGCGGCGTTTTATCTGCAAATATTAACTCACTAATCCCTTGGCATATTCAAACAACGCTTTTAGCAGCGCAAGTTTCTCTTTATCGTCTTCATACTGGTTATAAAATTGTTCCAGTTGCAAAACATAATCTTGTACCCGCTCAGGGCTAAGCGCTTCACGGCGATGCTGTAACCAACGCTGTTGTTCACTGTTATTCAAGGTATTTGGGTAGTTACGGGCGCGGAAGCGGAATAGCAGGGCCTCCAACCGTGGGTCCTGAAATGTCAAATCCAGTGCTGGCAGATTTTGTGGCTCAGTTTGCTGGATAATCTTCATGGTGGCGCGGTCAGCATCACTGAAAAAGCCGTTATACAACTGTGTATCCACATCATCGGTAACCGCGAATGGCTCAGCTTGTGCAAACAGCGCGACCACTTTTTCACGCACCTGCGGGTTTTGCCGCAGCAGTTGCAGATTTTGCAAACAACGCTGGCGATCAATCCCCAAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 1931350-1929760 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031780.1 Yersinia pseudotuberculosis strain FDAARGOS_342 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1931349 28 100.0 32 ............................ AAAAGTTAATTCATATCCATTCTCATAAGCAA 1931289 28 100.0 33 ............................ GCCCCGAAAAGTGTGTCTATATTAGGCATTGTT 1931228 28 100.0 32 ............................ TCCAGTAAATGCACTTTCCGCATCAATGTGTG 1931168 28 100.0 32 ............................ AGCTACTATCGGGAGAACATCAGCGGTACAAA 1931108 28 100.0 32 ............................ CCTTGGCAAGCCCATTCTGTTTCGGATAACTG 1931048 28 100.0 32 ............................ TCACGAGTTTTAACATAAGTAAATGTACTACG 1930988 28 100.0 32 ............................ AAAGAGAAGCCCCTCATTATGAATGATCGGTA 1930928 28 100.0 32 ............................ AAACTACTATTAATTTATTAACTCAAAATGTC 1930868 28 100.0 32 ............................ TCGTTGAAAGAACACATGTTGATGATGATTGG 1930808 28 100.0 32 ............................ ACTAATGTTTATATATCTTTAATATCTGAGGA 1930748 28 100.0 32 ............................ ACCATAAAATGTATGGTTATATGATTTTACCC 1930688 28 100.0 32 ............................ TATGTAGATGCTTTAAAAGGAGTGAAGAAAAC 1930628 28 100.0 32 ............................ AACACGTTGGATGAATCACAACAGTTAATTAT 1930568 28 100.0 32 ............................ TTAAAAGTGATGCTAATTCAGGAAGTGCGGAT 1930508 28 100.0 32 ............................ AGTCTGGCGGCGCATTATCTGGTTTTATGTAT 1930448 28 100.0 32 ............................ ATATTAAACCACACGATTCAACTACAAAAATG 1930388 28 100.0 32 ............................ AGACACAGGCGAAACCACATTCTATATGAATC 1930328 28 100.0 33 ............................ AGCAGCAATGGGATGAAATTAATAATATTAAAA 1930267 28 100.0 32 ............................ TATCTGGAATCCCAGAAGTATTATTAGCTATT 1930207 28 100.0 32 ............................ AGACACAGGCGAAACCACATTCTATATGAATC 1930147 28 100.0 32 ............................ GTGTCAGCTTTTAACGCATATAATGAACCAAT 1930087 28 100.0 32 ............................ TCGGAATACAGATTATTGCTGGTACTGTCAAC 1930027 28 100.0 32 ............................ CGCTAGACGCTTCATTTTTCATTGTAACTCAA 1929967 28 100.0 32 ............................ AAGTTAAACAGTATGTTGACGATGAAATAAGT 1929907 28 100.0 32 ............................ GAAAATCACATTGCCGGCGTGGATGAACAAGG 1929847 28 100.0 32 ............................ ATCATGAAAGACATTGTTCGCCAGTCCCCTGA 1929787 27 85.7 0 ...................A-.A.T... | C [1929763] ========== ====== ====== ====== ============================ ================================= ================== 27 28 99.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATTGCTGCCCACGGCGCTGGAGGGCGGCCAGAACTACACGGTGTAGCACCAGATGGATCATCACAGAAATCAATAATATTAGCCCAATCACCATCGTCAATGACATCACATCGGAGAACTCCATCCCCAATCTTTCCAGCCACTGGCTTATTCTTTGTTGCATCACTGCTCCTATAAAGCATCAATCTGACTAAAAGGCCTTAGCCTAAAGGCTATAGGCGCAGGGGGTGCACCTGTTTACCCTTTTTTACATTGTGGTTCTGTATCTTTGTTCGGTTGTTGCCCAGCGAGGGGAGAGACATATTTATAGGCTGTGGTTTATGACATGGTTTGTGGAATTGTACTGTGGTTTTATTATGAGTTATGTTCTGACCCTATTTTTTTAGCTACTGCTAACTCATTGATTTTACATTGTGGTTATCGGTGGTCTAAAAAAAGGGTTTTTTCCCCATTAGCGAAATAAGTATTTTACAAACAGGATGTTATCGTATTATCTTACT # Right flank : TTCTGGACCATGCGCTGATGCTATTTGGGGAGCAAAATTGCGAGCGGAAGCGCATTTTGTAACTGACAACAGGGAGAATGGCATCTTTTATTACTGACTTTATGAGTATTAGAGTAGGGTAAATAGCAGGTAGCATATCAAGATATACCCGTCATACTTCAAACTGCATGTATGTTGGCTGCGCTCAATTATCCCGGTCACTTACTGGTGTAAGTGCTTGGGGATTTACTCAGTTGCTGGCTTCCTGCAACTCGAATTACTTTGGGTATAGAGAGAGTTATTTTTTGGAAGAATATCTGCTAATAAAGCGCTAACGGAAAAATAGCGCGGTGGATATCCCGCTAAGGAGTTTTTTGGCTATGGAAAACGCTATTCATTCCTCTGATTTGAAAACGATCCTGCATTCAAAACGATCCAATATTTACTATTTAGAATATTGCCGCGTATTGGTTAATGGTGGGCGAGTTGAATATGTCACCGATGAAGGTAAACAATCCCTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //