Array 1 173351-174795 **** Predicted by CRISPRDetect 2.4 *** >NZ_SAYF01000022.1 Brachyspira aalborgi strain PC390II PC390II_contig22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 173351 31 100.0 37 ............................... GTGAAGGCTGTCTGATCATTATCCCATGTTACTACTG 173419 31 100.0 36 ............................... TTGAAGACAGCATACTAATAGACGGAGAGCCTGCAA 173486 31 100.0 36 ............................... TTGACACCATATTGTCAATAGGCTTGCTAATAAAAA 173553 31 100.0 37 ............................... TTAGGGTTTAAAATTATGTATGATATGTAGCATTAAA 173621 31 100.0 36 ............................... TATTTTGTGCCATACTCTCCAGCGAGCAAATATTTA 173688 31 100.0 36 ............................... GCCTCTGCTGTAAATATGTGTTCTTGGCTTAGGTCA 173755 31 100.0 37 ............................... TATGTAAGTTTTTAATTTTTCTTTACTTTTTTTACTA 173823 31 100.0 36 ............................... TGTTTTCTGACATTACTGCCATGAGTTCTTTATTAA 173890 31 100.0 38 ............................... GCTTGTGTTCCGATTTGTTCTGATAATGTTCCTTTTAC 173959 31 100.0 36 ............................... TTGTGTTTAAAGCCATATCTAACATACTCAAGTTTT 174026 31 100.0 37 ............................... TTCCAGGATCCTGGTTCTTGTAATTCGTTTAATATGC 174094 31 100.0 36 ............................... TATTCTCCGCATAAGATATATTTTAATTTATTTTGA 174161 31 100.0 36 ............................... GATCAAGAATTGGCTTCTTTCAATTGTATTGTCTAC 174228 31 100.0 36 ............................... CAGTGCGCGCTTAAGAACTCATCGTCTCTTATACCC 174295 31 100.0 37 ............................... CAATGGGAATTGCCTTTTTTTACTCAAGACAAATATT 174363 31 100.0 36 ............................... TTGCTGGTAAAAAGTCCGCCGTATCGCCTTCTACTT 174430 31 100.0 36 ............................... TTCTCTGCACGACTGTCGCGCGCTCTTCTTTCGTAG 174497 31 100.0 36 ............................... TAATTCTATCGCATGCATAATCGCGCGTTACTAAAT 174564 31 100.0 36 ............................... AAAAAAAGTTCAACCTCGTTATCGCCTCCGACTTTA 174631 31 100.0 36 ............................... TAATTCTATCGCATGCATAATCGCGCGTTACTAAAT 174698 31 100.0 36 ............................... CTATCTTTTGAAGTTTCTTTTTACAATCTTTCAAAT 174765 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ====================================== ================== 22 31 100.0 36 ATAATAAATCTAACCATATTGGAATGTAAAT # Left flank : ATTTGCTCGGAGAAAAAGAATATTCCCCGTTTAAAATATGGTGGTAGAAATGTATATAATTTTAATATATGATATTCAAGTAAACGATGAAGATAATCCTTATGTATTGAAAAAAGTTTTTAATATTTGCAAAAGGTATCTTAATCATATACAAAAATCGGTATTTGAAGGCGAACTTTCAGAACCTAAATACCTTAAATTAAAAGAAGAGCTCTTTGACATATTAAGAGAACATAAAGACTCATGTATAATATTTAAAAGCAGAAACGAAAAGTGGCTTGAAAAAGAGTTTTTAGTAAAAGAAGATATTGACAAAACTTCAAATTTTATATAAAATACAAGTATGTCGATGTATAATCTATAATAATTTGCGGATTATCGACAGACGATTTTTTAAATTAATGTCGTATTTTGTATTGTTATATTATTTTATATCAATACTTGTATCAAATTAATATGTAGAAAATATTAGTTTTGCATATTTCAGAGAGAAAAAACGG # Right flank : TTTATCTTTTTGACCATTTTCAAATTATTTATAAAATATTTTCATTTGTAAAAATAATATTTTTTTAAAACTGCATGATAAAAATAACCTATTGCCACAGATATTATGATCAATAATTTAAATCCAATCTAAAATTGAGAGGATATAAAAATTTAAAGCCATTATCCCCCCCCTATAAAGTTATCAAAGAATTTATTTCTGAAATTCTCTCGCCCTTTTTAACGGGAATAAACCAAGCCAAATTATCAACTTTTTCTTTATTCATTTTAATTGAAATTCTAATTCCAAATAAAGTTAATCTCAAATACTCGTTATTATTCGATATTCCAAAAAGCGTCCACCAATTACAATTTAATCTCAATTTTTGATAATCATTATTTGAAATCGTTTCTTTATTTTTAAGCGATAATTCTCTTTCTAATCTTTTATACTCGAAAGAAACAGGCTCAAGAATGCAAGATTGTTTTATAAATGTTTCTCTATCTGAAAAATTATATTCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATAATAAATCTAACCATATTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.65%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [75.0-88.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA //