Array 1 55768-56936 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGCH010000003.1 Providencia stuartii strain M5 NODE_3_length_568743_cov_31.626734, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 55768 28 100.0 32 ............................ TGAAGTATACGAATATCTGTGCGAAACTGGTC 55828 28 100.0 32 ............................ AATAGACACGCGGTATGCGTTCAATATAAAGT 55888 28 100.0 32 ............................ TGAAGATTTACGCTCGGCGTCGTCTAATGACC 55948 28 100.0 32 ............................ AATTTCTGAAGCTGATGATATTCATCTAGAAA 56008 28 100.0 32 ............................ TGATGCTAAACCGTGGGGTAACGGATCTATTT 56068 28 100.0 32 ............................ ATATCAGCTAACAATGGATCTGATTCTATTAA 56128 28 100.0 32 ............................ CCGGTACACTGGTTTTGCTTTTACCGGAAAGG 56188 28 100.0 32 ............................ CGATTCTTCCACGGCTTGCCAATCATCTTGTT 56248 28 100.0 32 ............................ TATAGTAAAGTACAACCAGTGCCCAACAATCG 56308 28 100.0 32 ............................ TAGCACGCGTAAAGTAAACAATAAGCCGTTAA 56368 28 100.0 32 ............................ ATTCATTCTTGAATAAACAGATTTAGGAATAT 56428 28 100.0 32 ............................ AACGCTTAAATTAGCGGTTAAGTTCGTGCTGT 56488 28 100.0 32 ............................ TGTACGAACTCCATGTATATCACCGATGGAAC 56548 28 100.0 32 ............................ TCATTATGATACCCGCTTACCTTCTCCGCTAA 56608 28 100.0 32 ............................ GCATATCTGGGGCGTCAACCTTTCTTATGTAA 56668 28 100.0 32 ............................ CAGTGGCTGATGCTCTCATGGTTGTAGCTGAA 56728 28 100.0 32 ............................ GTTTCGTCTATGAGATTAAATTACCAGACGGT 56788 28 100.0 32 ............................ CACTGAAGGTATTTATCATTAGTCCAGCGCTG 56848 28 100.0 32 ............................ TATGGAACTTGAAGTTTATTCAATTCAAGGAA 56908 28 85.7 0 .......................TT.TC | C [56928] ========== ====== ====== ====== ============================ ================================ ================== 20 28 99.3 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : ATTAAAGCGGCACTAGACCAAATTTCCAATATTGAAGCAAAACAAGGCTTACAACTACAAGAAATTGATAAGTTGGATTTTTTAGCAGATACGCGTTCAATTCAAAATGCTGCTCGTAAAAGTGAGTTGCTTGAGACTAACTGGACAGGCACCACCACGGATTACTATAAAGAAAAAGCGATGTTTGAAGCCTCACAAAGTATTTTCAAAGATTTAAACAGCATGTCTTTATTTGGTAGTCGTTAATCATCTAATACTTGAGTTCTACTCAACCGCGCTTTGCCGTTATTGGAGCGCGGTTTTTTTGTTTTTGGTGATTTTTGGGATCCAACGAAGAATGCTTCAACGAAGTTGTGCTATCTTAAATTTACCCTTTGTTTTTTGTTCTTTAAAAAAGTCTCTTAAAACAATATGTTATAAACTGAGTGTAAAAAGAAGGTATTTTCTTATTTTTATCGGTAACAGGTTGTTGTGATTCACTTTACTTATGATATTTTATA # Right flank : CAACACGCTATACCCATAAAAAGTCGTTTTGACTGGGGCTTTTGCCAAGCTCTTCACAAATTTTACTTTAGTACCAACTTTGACTTGTTTAGTGTGGGAATGTAGATTCTAATTGACTGTAAAACATTCAATAAACTTATCAATTTAAAAGGATGTTACGTCATTATGGATGATTTTTCACCATCAGATCTCAAAACCATTTTGCACTCTAAGCGCGCCAATATGTACTACTTAGAACATTGCCGTGTGATGCAAAAAGATGGCAGGGTGCTGTATTTCACTGAAGCGAAAAATGAAAACCTGTATTTTAATATTCCTATTGCGAATACCACGGTTATTTTGCTCGGAACAGGAACGTCTATTACCCAAGCGGCGATGCGAATGCTATCCCAAGCGGGGGTTTTAGTCGGGTTTTGTGGTGGTGGCGGGACACCGTTATATATGTCTACAGAAGTGGAGTGGATGACACCTCAAGGGGAATATCGACCAACAGAATATCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 65595-66921 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGCH010000003.1 Providencia stuartii strain M5 NODE_3_length_568743_cov_31.626734, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =============================================================================================================================================================================================== ================== 65595 28 100.0 32 ............................ GTAATGAAATGGTTAGGAGAAAGGATCTTAAA 65655 28 100.0 32 ............................ TTTATATTTACGGTTAATAGGTAGTGCATCAC 65715 28 100.0 32 ............................ TACCGGAACAGTAACTAAACTTAGGATATAAA 65775 28 100.0 32 ............................ GCATACAGATTTAAAAATTAGATATCGTCGTT 65835 28 100.0 32 ............................ TTATAAACTGTGTGGAGTGCTTAGGATGGGAA 65895 28 100.0 32 ............................ AAAAAGTTCAGCACAAAGAAGCATCGCATGTT 65955 28 100.0 32 ............................ TATCGATGATTCTGGTTGGATACAGCCTCCTG 66015 28 100.0 32 ............................ TACAGGCCACCGTACAACTGTCCGCACAGGTT 66075 28 100.0 32 ............................ GTTAATATATGCGCCAGTATTGTTTTCATTCG 66135 28 100.0 32 ............................ GAAGGACAGAGACGCTTGCGGCTCTGCGGAAA 66195 28 96.4 32 ...........T................ ACCCTGATAGCGAAAATAAGGGACGTTAAATA 66255 28 100.0 32 ............................ AACGTATAGTGCAAATCTTTCGCGGTGATAGC 66315 28 100.0 32 ............................ ATAATCCAAGCTGCAGCATCTTCTTGCGACAT 66375 28 100.0 32 ............................ AAGAATAGCAATAAATGGTGCTGAATTGGGAT 66435 28 100.0 32 ............................ TGCAAACATTGAACATATCGGCAACTATATGA 66495 28 100.0 32 ............................ AGCAATAAATGCATCACGAAATTCAATCACAT 66555 28 100.0 32 ............................ CACCAGCCGCCCATTTTCACAGTTGAATATTT 66615 28 100.0 32 ............................ AAAACAGAGCTATTTCTTTGTCACTTAAATAG 66675 28 85.7 191 .....................C...TGC TACGGCTTAGAAGGCCGTTGTTCACACTTCAATTTATCCATCATTGTTCGCTGAACAATAATTAAATCCATCTATTTATAATTGATATTTATTTAAGCGAACTTCTTTATTAGGTTAGTGATGCGTTTAACGCGAGATATATCTTGCTACTATCACTCGATAGCTTAGAAATGAAACAAGATACGGGTATT 66894 28 71.4 0 TA........ATG.......T..C...C | ========== ====== ====== ====== ============================ =============================================================================================================================================================================================== ================== 20 28 97.7 40 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TATTAAGTCAATTCAGCAGGTTCCCGAGCAATCTGTGCCTGTGAGTTATATTCGGCGCCATGTGAAAGGGAAAAGGCGAATAGAGGCAGATATGCAGAAAAAAGCGCAGCTATGGTCGGCGAAAACAGGGCAATCGTTGGATACCAGTTTAGAGGCGTTATCCAAAAGCAAGCCTAGAGCCAACAATCGCTTACCCTTTATTTGGGTTGAAAGTTTACACACCAAGCAAACTGAGGCGGGCGGGCGACCTTTTCCGTTGTTTATTGAAAGGGTGGAGTCAGCACAAGAGCAAAAAGGGCCATTTAATTGCTATGGTTTAAGCCAAGTAACGAATGGCTTAAATTTGGTTGCAACGGTTCCTCATTTTTGACCTTTATTTTTTGCTCTTTAAAAATTGAATTTAAAATCAATAAGTTATAATGTGGGTGAAATAAAAGGGTATTTTTAAATAAATACCCTTAACGCATTGTTATCACATATTTTTTGCTTTGAAGTTTATA # Right flank : CATAGTAGTAAACCTGAAAAAAGAGACGGGTTTTAACTACTTTAATGAGGGGAATTATATGGAAATTATCATCAATTTTTCTTGGGTTACATTAATTATCAGATTCACAAAGTGGTACTGATAATGAACTAATGCTGATTGACCGAGTATCGACACTCAAACAAACAAATTAAACATCAGCGAGAGCTGCTCAAATGCTTGGTGGATAAGCCGTTCGGTGTAGCGGGGGAGAATTGAAATAATCAACCCTAACATACTGATGCCAATGGTCAGTGTCAGTGGGAAGCCGACCACAAATACCGACAGTTGTGGAGTCATACGGTTTAAAATACCCAGCGCAAGGTTAAGAATTAAAAATAAGGTAATAAACGGTAAGGCTAACATTAACCCATTAATAAATATGGTGTTGGCGAATTGAGCGAATACCCAAAAACCGTCGCGATTTAATGGTGCGGTTTGAATTGGGATAAGCTCAAATGAATTGACCACAATATAAATAA # Questionable array : NO Score: 5.36 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.78, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //