Array 1 290307-286547 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHSG01000022.1 Bifidobacterium longum subsp. longum strain MCC10086 contig0022, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 290306 36 100.0 28 .................................... GTGGCCGAGGGCATACGTCGCTGATATT 290242 36 100.0 28 .................................... GCGCTCCAAGACGGGGATAATCAGGTCT 290178 36 100.0 28 .................................... ACAGCGGAGATATTGCGTTGAATCAGGT 290114 36 100.0 28 .................................... GTGACCAGCTGCGCCAGTAGTTTCTCGT 290050 36 100.0 29 .................................... AAATCAAAGAACGCGGTACGGTCGGGGAT 289985 36 100.0 28 .................................... TTCGCGCGTTCGCTCAACTCGTTCGCTT 289921 36 100.0 29 .................................... AGAATGGCATTAACGATATAATGTTTGGA 289856 36 100.0 28 .................................... ATCTTTAAGCGACACGCCTATCGTACAG 289792 36 100.0 28 .................................... TTTTGCTTGCGCATGTTTCACCTCCATA 289728 36 100.0 28 .................................... TCTGGTACGACGGGTACGAGAACATGGT 289664 36 100.0 29 .................................... GAACCTGTTGGCCTGGTCCCAGTCGCTCG 289599 36 100.0 28 .................................... ACTATGGATATCGACATGAAAATCCTCC 289535 36 100.0 28 .................................... CTTCGAGGTTCCGGTAATGGCTGGGCTT 289471 36 100.0 28 .................................... AGCGTGAACGCAAGGCCATCGCATATGT 289407 36 100.0 28 .................................... CAGTGTTGCCGCTTTTTCGGGGGTGTCG 289343 36 100.0 28 .................................... GTAAAGGGTGGCGTTTTGTCGAAGTCAC 289279 36 100.0 28 .................................... GTCGTGTCGGTATCACCGTCACCGTCAC 289215 36 100.0 28 .................................... GGTCAAGTAGGGTCATGCGGGGTCAAGT 289151 36 100.0 28 .................................... GGTTGGTTCGATGATGCAACACCTATAC 289087 36 100.0 28 .................................... CTTCCTTTCCATTATTGAAAATCTCCAG 289023 36 100.0 28 .................................... ACATTTTGCCCACATTATCCAGATAAAA 288959 36 100.0 28 .................................... TTATCAATGAAGTTGCGGACGATGTTCG 288895 36 100.0 28 .................................... CGCGAACTTAACGGGGAGCCGGCGTTCC 288831 36 100.0 29 .................................... TCGTCGTCCATCTCTGTACCTCGGTTTCT 288766 36 100.0 28 .................................... CGTCTCGTGTTCTGGGCCCTCGTGTTCG 288702 36 100.0 28 .................................... TCCATGACCGCGTCCATCACCTCATGCC 288638 36 100.0 28 .................................... CGTTCCCCAGTGGGGTGAGTGTGATGCC 288574 36 100.0 28 .................................... CATCGAGACGACGCGCGAACTTGAGGCC 288510 36 100.0 29 .................................... ACCGATTGCAACGCGAATATCCCGGGTAT 288445 36 100.0 28 .................................... TCCTGCAACTCCTCCTTGCGGGCCTTCA 288381 36 100.0 28 .................................... GTTGTTCCGGGAACAACTGGGAACAACT 288317 36 100.0 28 .................................... CTTGCCTCCGTTCTGCATCCAGCTGTCG 288253 36 100.0 29 .................................... ACGCGGCGAAGAATCTTGTTATCGCGGCT 288188 36 100.0 29 .................................... GTCGCACGTGGCATGGCATGTTGGCGAAC 288123 36 100.0 28 .................................... GCCAACGGCGCGTACACCGGCAACTTCA 288059 36 100.0 28 .................................... AAGAAGACCGCGACTATCGGCTACCAGG 287995 36 100.0 29 .................................... GTGGGAATCCTGTTGAAGTGGGGTGAGGA 287930 36 100.0 28 .................................... AGGAGGTTCAACGCAAGTATTTCACGGC 287866 36 100.0 28 .................................... AGTCATTTGGTGTGCCTTTCACGATGAT 287802 36 100.0 28 .................................... TTGCATACGATGTCGAATATCCCCTCTC 287738 36 100.0 28 .................................... TGTACGCTGACGAGTTTCCTGTTGCTCA 287674 36 100.0 28 .................................... CGGCCCAACGGAGGTAGGTGCTGCGATG 287610 36 100.0 28 .................................... CCAGTTCGACGCGTAGGCGCGAGTGTCC 287546 36 100.0 29 .................................... CCCTTGCGCGTACTGTGCTTGTAGGTGGC 287481 36 100.0 28 .................................... CGTAAACCTTGTTAAACAAGTTGTCAAA 287417 36 100.0 28 .................................... CTGTGGCTTCTTCACCTTCGGCACCTTC 287353 36 100.0 28 .................................... TTTTCTCCAGCACACGGACGTAATCGGC 287289 36 100.0 29 .................................... CGCCTCGCCGCCGCACGAGAACGAGTCAA 287224 36 100.0 28 .................................... TATGGTGTAGCCAACAACAAAAACAAAC 287160 36 100.0 29 .................................... CCCTTGCGCGTACTGTGCTTGTAGGTGGC 287095 36 100.0 28 .................................... TATGGTGTAGCCAACAACAAAAACAAAC 287031 36 100.0 28 .................................... CGGGTAACAAGGTGGACATGCTCATTGA 286967 36 100.0 29 .................................... TGTTGAGGGGAACCGTATCAAACCTGATT 286902 36 100.0 28 .................................... TGGTTTCCGTGCCGCATTGGTCGCAGTA 286838 36 100.0 28 .................................... TAGAAGTGCAGATTCCGTTCCTGCAAAC 286774 36 100.0 28 .................................... AGGACGTGCAACGCAAGTATTTCAAGAT 286710 36 100.0 28 .................................... TCGTCGATGTGTTCCAAGAGGTTTGGTG 286646 36 100.0 28 .................................... TATTGTTCGGGTGCGATGGTGATGATCA 286582 36 86.1 0 ..............................TTG.AT | ========== ====== ====== ====== ==================================== ============================= ================== 59 36 99.8 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : ATTCAACGGTTCCGGTTTGACTATACCGAGCTCATTGAATGATTTTGCGCAGCAATTTGGTTTATATTGCGAAGGCAAAATCGACAGGTTGCAGGTTCCCGAATATGTAGGCGAGTCATGAAACGCGATGAGGACAGTGGCGGCATGTGGTGCTTGGTGATGTTTGATTTGCCGGTCAAGACAAAACGGCAACGGCATGCTGCAACTGTCTTTAGAAATATGTTGCTCGACATGGGATATGGAATGGTGCAGTATTCCGTATATGTGCGGTATACGCCTACGCAATCGGGTAATAGGGCGACGGTCAAAATGATTAAAGACAATCTGCCAGCTAATGGCTTAGTTAGAATTTTGCATATTAGCGATCATCAGTGGTCCACGGCGGCCCGATTTTCTTCTGGAAAACGTGAGATTGAGGAAGAAACGCCTGACTTTCTCACGCTTTTTTGAACGTAGGAGAGTCTGAAAAGATTGAAAAATAGCCCTTCTTGATAGGCTAT # Right flank : GCTGGAATGCTTGGGTTGATTTGGCTGATTTAGCTGTGATGGCCGCTGCGGGAATGGCCCTTGCGCGGTTGGCGGCAGAGGTTGCGGCGCGGATTGCGGCACTGATTGTTGTGCCAATTGCGTCTGCGGTGAAAAATATGGCGACGGCTGTGTCTGACTGTTTATCGGCGGATGTTCCGGCTCAGGTTGTGGCTGGAATGGAGAATATTGCGGTTGCGCCATTGTATGCTCCTGCCCCTTCATTGCCATTTCATTGGCGCATGGCGAGGGCTGAAAACCAAGATGATGAATCCTGCATGAGTTATCCGTGATTCCTGTACGTTGGTACAGCGCGGAAGGTTGAGCAGCCGACATATGCAGGCTTGTCGGTTCAACTGAATATCTTTAAACTATGACTTCCAATACCCTTCGTATGTCAACCATGTTCCTGCGCACCCTGCGCGAGGACCCCGCTGATGCCGATGTCGATTCAGCCAAGCTGCTGCAGCGCGCCGGCTATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //