Array 1 50-738 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSPM01000085.1 Acinetobacter baumannii strain ABUH516 contig_85, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 50 29 96.6 31 ............................T GCAGCTACTCGACATGTTGGTAGGGCAGATG 110 29 96.6 31 ............................C AGTCGGCTGGTGCTAATTGAATAAAATCGTT 170 29 100.0 31 ............................. GATTGAGGCGATTTTTATCGCGGACATTGCC 230 29 96.6 31 ............................C AGTCCCCGCTTTGAAGCATTCCCATCAGTAC 290 29 96.6 31 ............................T CACAGCTATCGTCTGGCTGCCGTCGCGTAGA 350 29 96.6 31 ............................T TATTATTAAACGGGAAAAGTATATTCTTGCT 410 29 100.0 31 ............................. TACTATTATAATGATCTAAACCCATTACAAC 470 29 100.0 31 ............................. TCATCAATAAGTTGGCCTTGATTTAAATAGT 530 29 100.0 31 ............................. GATACAAACGAGTTCGCATCTCGACCAGAAG 590 29 100.0 31 ............................. TTATCCAGATAAAACCATATCTACAAAGTGG 650 29 96.6 31 ............................T CAACCTGAACACAGACATACATGTTCTATTG 710 29 82.8 0 ...GC...................AT..T | ========== ====== ====== ====== ============================= =============================== ================== 12 29 96.9 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : CATAGATAATTTAGAAAATACTATTATAATGATCTAAACCCATTACAACG # Right flank : TTTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGCACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTAC # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 632-4 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSPM01000003.1 Acinetobacter baumannii strain ABUH516 contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 631 28 100.0 32 ............................ CATTTCCCACCATGCGAACATGCGTGTAACCA 571 28 100.0 32 ............................ TAACGAGCATGGTTTAGATTTAAGAGATGGTA 511 28 100.0 32 ............................ TTTTGAACTTGTGCATTCTCAATGATTGTTTT 451 28 100.0 32 ............................ TTATTGTGAGCACCTTGATTGCTGTGCGCTGC 391 28 100.0 32 ............................ TACAGCGGGAAACTTGAAAGTCATTGCGAAAT 331 28 100.0 32 ............................ TGATTGCCCCCTGAGGAAACTGTATAAAGTCC 271 28 100.0 32 ............................ AAACACCAACTAAGCCATTGCCTTTTAAAAAA 211 28 100.0 32 ............................ AGATGGTAAGAAAATTATTGAGTCTGGAGACA 151 28 100.0 32 ............................ ATAAACATATACCTGGAATCCAGCCACAACAC 91 28 96.4 32 .....................G...... AAAAAAATCTCCTAGCACGGGAAACGCTATCG 31 28 75.0 0 ....TG.T......T.....GG.T.... | ========== ====== ====== ====== ============================ ================================ ================== 11 28 97.4 32 GTTCGTCATCGCCCAGATGATTTAGAAA # Left flank : ACGTTGGGCCAAAACGCTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGTGATGAAGGCAAAAACTCTCATGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCTGATCTAGTTAAAGATGCTTTTGTAATGCCACTCGCTTTTACATGTGCAGCAAGAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACTTTTAACCCAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : AAAA # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCGTCATCGCCCAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [5.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 5722-7364 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSPM01000003.1 Acinetobacter baumannii strain ABUH516 contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5722 28 100.0 32 ............................ AATCCTATAAAATTTAAAAGTGTTGATTTTAT 5782 28 100.0 32 ............................ ACGGATTACCTACAGGTTTACCAGTTGCATAA 5842 28 100.0 32 ............................ TCTTGAAGGTGAGCCAACAAAAATCCATTTTT 5902 28 100.0 32 ............................ GTTTAAATCCATAAATGAATTTTGCGGTTTTT 5962 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 6022 28 100.0 32 ............................ AATGTACTTTAATTTCCACTCGACACCAGTTC 6082 28 100.0 32 ............................ CATGACCGAAACAGCCAAAAAGGTTTTATGTA 6142 28 100.0 32 ............................ TAAAGGATAGTTAGCTGTAGGCCCTGCGGTTT 6202 28 100.0 32 ............................ TTATAGTTATGTGTGTGATATCGTTAAGCTGC 6262 28 100.0 32 ............................ TAGCACAATCCAAACCTCAATAAAAAGTAAGA 6322 28 100.0 32 ............................ GAGCCAATAAGATCGCGAAGTATGCGGAAATC 6382 28 100.0 32 ............................ ACAGAGAAAACCCCACATGTTCGAGGGACTGC 6442 28 100.0 32 ............................ TGCCGGAGCGGTCTTGTCATTGGCGAACCCGC 6502 28 100.0 32 ............................ TATGCGATTTGATAATTAAATTGCGATACTGG 6562 28 100.0 32 ............................ GAAATAAAAAACACCTGATGAAAACAGTTCAC 6622 28 100.0 32 ............................ ATAATCACGAATATCACCAGTAAACCAGTGAT 6682 28 100.0 32 ............................ TTATTGGTCCTGGTCAGTGGAATGGTGATTCT 6742 28 100.0 32 ............................ TGGGTAAAAGCCGATGGATTAATCATCTTTTG 6802 28 100.0 32 ............................ ATTAACAAGAGTGGAATTTATTGAACTATTAA 6862 28 100.0 32 ............................ TCTGGGTTCTTTTCGCGTGTATGGGATACTTG 6922 28 100.0 32 ............................ TGTAAAGTCATTCGTAATAACCGTTATACGGC 6982 28 100.0 32 ............................ AAAACCAATCAAATAACGGTTATGTGGCCACA 7042 28 100.0 32 ............................ CATAGCGACATATAGTTTTGCCCGGATCTGAT 7102 28 96.4 32 ..................A......... TGTTTCGCGTTGAGGTCCGGGTAATCGCCTAT 7162 28 78.6 27 ....C.....CTCC..........T... GTCTTGTATCCTGATTTCAAAGATTCA 7217 28 92.9 32 ....C....T.................. ATATCACGCGCCATTGCAAGTTTTCTACCGAT 7277 28 89.3 33 ...A........CC.............. TGATCTTTAAGATTAAGCATCCGTTCTGTTTTT 7338 27 85.7 0 ...TG.......C...........-... | ========== ====== ====== ====== ============================ ================================= ================== 28 28 98.0 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGAATAAGGAAGTCTTCATTTAATAAAGTTCGAGCACTGAGATAGGGTAAATCAAGTGCTTGTTGTTTACTTAAACGAATTCCACCTTTTTCAATATTGGAATTAATCGTCTTTAAACTAAAGTGTACCGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTAGCCAATTTTTAACACATTATTTGAAAAATGAAAGTATTGAAGGTGAGAGCTGCGACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCATAAATTTAGCCTAAGACGATTAGGTTATATTTTTATAAAATTAGAAAAATTAATATAATTCAATAGATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : AGAGTTTCTTTCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAACTATGCATGTCATTTTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCAATTTTGGATAGCTATGCTATTCGTACAGGACATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCTACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTGGGAGCAAAACATAAATTTGCACACGATGGTGCATACCCAGTTGCATCGACTAAGAAACAGCAAAAGTTACTCATGCTTGATGAGTGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGAGACATGCATGATATTGGTAAGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //