Array 1 6029-3932 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJIA01000175.1 Cylindrospermopsis raciborskii S01 NODE_374, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 6028 36 100.0 36 .................................... TACATAGACCTTTTGATTGGAGAGAATGCTATTTTA 5956 36 100.0 41 .................................... TAACCCTTCTCCTACTCCCAACACCAACGGCGGGGAGCTTA 5879 36 100.0 37 .................................... GGAAACGCTTTTTGCCTTTGATGCTAATCCTAGCAAG 5806 36 100.0 37 .................................... GTAGAACGGGAATAGCCGGGGGTAGAACGGGAATAGC 5733 36 100.0 38 .................................... TTCAAAAAACTCTGCATTGAACTAAATCGTATCCTCAC 5659 36 100.0 36 .................................... AAGTCGCCGCAACGTTTATGACGTTGCAAATAGAAA 5587 36 100.0 38 .................................... ACTAACTCCTAGTTAGCGATCGCGCGGCTTTTTTCTTT 5513 36 100.0 36 .................................... GGTATGGGTTTTCTTTGTCAACTCTTTTTTTTTCTA 5441 36 100.0 37 .................................... AGAAGGGTTAGAAGGAACAGGCGCGCCGCCGCTATTA 5368 36 100.0 38 .................................... AATATGGGCCTTGGTATGCAACCCAGCGATTCCGGAGC 5294 36 100.0 41 .................................... GCCGTATATCGGTCTAATTCGCAAGAAATGGACAAATCCAT 5217 36 100.0 37 .................................... GGCAATCCAGAGAGAACGTTCTCAGAATGGTGGTAAA 5144 36 100.0 37 .................................... ACCATCCTCTTTGGGTAGTAAAGTTAGTTCGGGTTTG 5071 36 100.0 37 .................................... CTGATTGCATTTAATTTCACCACCATTTTGGGCTTGT 4998 36 100.0 37 .................................... GTTTTTATTTTCTGTACTACGAACAAAGATGAAATTA 4925 36 100.0 39 .................................... ACATTTGACTTACACTAACTATATATTTGACTTGACTAA 4850 36 100.0 41 .................................... CTATTGACAAAATCCGGATGGGTGGGATAGGATTTAAGAAA 4773 36 100.0 35 .................................... ATTTCTGTTTGAGTGAATTGACAAGCAGTATTCTC 4702 36 100.0 33 .................................... GATAACAATTGCAGAGGATCAATAGCAGTTGGA 4633 36 100.0 39 .................................... TTCTATAAATATAATATAACCTGATTCTTTAGCAATGTC 4558 36 100.0 38 .................................... ACTTTATTATGTCCTTCTTACAGGACTTAATCCTTCCT 4484 36 100.0 38 .................................... CCTTTGGGGTCAGAAGAGGGGTTCAAGTCCCGAACTGG 4410 36 100.0 38 .................................... CCTTTGGGGTCAGAAGAGGGGTTCAAGTCCCGAACTGG 4336 36 100.0 36 .................................... CTGTGAGGGTAGATACTACTGGGCTCCTTTTGTGGC 4264 36 100.0 38 .................................... AACCATAGCATTACAGCGGGGTCAAACTCCCTAAAGAG 4190 36 100.0 39 .................................... CCGATATTTTAAAGTAATCTTTATCTATTCCTCTCTCTT 4115 36 100.0 37 .................................... TGGTTTTAGCGATCAGCTATTCCCGTTCTACCCCCGG 4042 36 100.0 39 .................................... AAACCCGTGGGCTCAGATGACTATTTTTCTACAGATTTA 3967 36 97.2 0 ...................................A | ========== ====== ====== ====== ==================================== ========================================= ================== 29 36 99.9 38 GTCTTGACCTTCGCAAGAAGGAATAGGTATTGCGAC # Left flank : GTGAATAACTATCTGTTGTCTATATTGGAGGAAGATAATAATAAACAGTCATAAGTTTATCATATATGATTAGTGCTGATTCTCTCTGGGAAGTAGAATTAGTTCCAAAAGTTTTATAGTTAAGATTTTCTCTACAGGTGGCGAATAAATAAATATTACAATATTGATATTATATGTAAATTATTAGTTTTTTGGTGTAAAGTTATTATAGATTAGGAAATTAAGGGATTATATCATTATTAAGATGAGAAAATTAGTCCAGTATTTATGAAAAGTAAAAGTAATATTAAAGACAGTAAATTAAGTGATTAACGAAAGAGATGCGAAGGTCAGGAAAAAACGCTGGAATGCCTATTATTTCGTCGGGAACCTCGCAGCCTTGTGGTGTAAGGGTTTCAGCCATTATTTTGATGGTGCGGGAGGTGAAAAACAGAGAAATTTTGCTGACCTTCGCAAAGTGGGTCTAGACACCAGTCAGGGTAAGGGGTTAAAATGGAGGG # Right flank : TTGAGTATATTTAGTGTAGATAAGTAAATTCGCAAACTTTAACGTTTATAAGAGAAAGAAGTGTTAAGACAAATAAAAAAGAGGGAGGATAATCTTCCCTCTTTCATTTAAGTATCTATAGATAAAGACTACTACAATCATTAGGGCGGGCATGTAGATATTTAGTTGTAGTAGCGACAGAAGAATGACCTAAAGATGTAGAAACTTGATTAATATCAGCGCCATTGTGTAAAGCCAAACTAGCATGAGTGTGTCGGAGCCAATGGGGACTGGCGCTGATACCAATTCTTTGAGAAGCAGTGCGAACAATATCCCAAACAGCTTTTTGTGTGAGATTTTTACCACCCTTGCGAGATTTAAATACAGGAGACTCATTAGTGGTTTTATGCGACTTTAAAGATGCCCATAGTAAAGGAGGAATGATTAAAGTACGTTGTTTGTTACCTTTACCAGTAATATGAACATAAGCAGTAGAACCATTATCTTTAATATCTGCCCAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGACCTTCGCAAGAAGGAATAGGTATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.20,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 53236-54357 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJIA01000041.1 Cylindrospermopsis raciborskii S01 NODE_47, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 53236 36 100.0 39 .................................... GTGCGGCTTCGTGTGAATACAATTTACAATTAAAACAAG 53311 36 100.0 36 .................................... TAAAGAGGAAGGCTTTATGAGGGCCGTCCCTCTCAA 53383 36 100.0 35 .................................... GGGCAAATAACGGAGGGATCGAAGTGGAGGATTAC 53454 36 100.0 36 .................................... CCTTGCTTAGATGGGGTTTTTTCTTTATCTCTTTAC 53526 36 100.0 39 .................................... CCCCTACTAGTCTTTCTCTACCTCGCATGGTTTAACTTA 53601 36 100.0 34 .................................... AGAGCTAATAAGTCTAATAACTAATAATATAGAC 53671 36 100.0 37 .................................... CTCGTAAGTCTTTAGTTTACTATCTACTTTAGCCTTA 53744 36 100.0 36 .................................... GCAGTTAGAGTTAGGATCATCTAGATTATCTAATAC 53816 36 100.0 37 .................................... AGGTTGGGGTTGGTGGTGTTGGTGGGGTTATTATTCA 53889 36 100.0 39 .................................... AATCAATCTCTATTACAGGTGGAGTTATAGGAAATATAG 53964 36 100.0 39 .................................... AGGAGTTACCTCAAGAGGAGTTACTTCTTGAGGTAACTC 54039 36 100.0 37 .................................... TATAGTAGGTACCAGCAGCGGGTACAGGGCTGTAATA 54112 36 100.0 32 .................................... GTTAAATTCCCCACTGCTAACTTCTCCCATTG 54180 36 100.0 35 .................................... AGGTAGCCGCGCGGCTACCTTCAATAATCAATCTC 54251 36 100.0 35 .................................... TCTCGTACCAGTCCTTATCCTCAAGTTTCCAAGCC 54322 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 16 36 100.0 36 CCCCGCTTCCCTCTGGGAAGTGGAATCAATGGAAAC # Left flank : TAGATTTTATCCTTTGTCTAAACATACCATTCCTCAAATAGAAGCTTGGGGAGTGGGAGTACCCATAGTGCAATTACCCAATTCTATTATTATCTGAGTATTCATGTTAGGTAAAGTTTTAATCTATATGATATTTGTTTACTTTAGTCTAAGCAAAAATAAAATATACAATAAATTTTTTGTTTTTGAATACCAGTTATTTGAGCATGAATCAGTTATAATAGGATAAATGGAAGGATTAATTAAGGATTAGTATTGAGATTATTGATTAATGGTTAAAGTGATATTAAAGACAGTAAATTCAGTGATTAACGAAGGGAATGCGAAGGTCAGGAAAAAACGCTGGAATGCCTATTATTTCGTCGGGAACCTCGCAGCCTTGTGGTGTAAGGGTTTCAGCCATTATTTTGAGGGTGGTAGGGGTGAAAAACAGAGAAAATTTGCTGACCTTCGCAAAGTGGGTCTAGACACCAGTCAGGGTAAGGGCTTAAAATGGAGGT # Right flank : | # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCGCTTCCCTCTGGGAAGTGGAATCAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 844-210 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJIA01000075.1 Cylindrospermopsis raciborskii S01 NODE_143, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 843 37 97.3 39 .......................C............. CATGATATCATATCGTGGTCTTGATTGTCAAGAGTTCTC 767 37 100.0 34 ..................................... AACTCTTTAAACTTCTGCCACTGTAAAGTAGCAG 696 37 100.0 38 ..................................... CTTTACCATTTGGTCTAATTGTTCATCAGACACATCCA 621 37 100.0 39 ..................................... AGTCTCTGGGTAAAACTTGTTCATTGATAGCGCGTTTGT 545 37 100.0 35 ..................................... CCTGCTTAAGCAGGGGTATTTGTTCTGTTATCCGG 473 37 100.0 39 ..................................... AGTAAAATTAGTGTGTTTAGTAGAACTAGGTGTCGTGGC 397 37 100.0 39 ..................................... CTTGTCTGTGTATCCGGATCGGATATCGTATACCCTATC 321 37 100.0 38 ..................................... CTTGTGAGAAAAATCTGTAGTCCTATGCTAGGATGCTC 246 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 9 37 99.7 38 GTTCAAATTTAGACTTATCTCCATAGGAGATTGAAAC # Left flank : TGACTTTAAAAAAAGCCACTTCTGTAAATTTGGTTAATAATTCTAAAACAGTTAGTGGAATGCTTAACTGGTCTGATTTGGTTACTAAACCTCAGCTCTTTGATTTAATTGCTTCAGCCTTACCCACTCGTTTATTAGAGAATGGTAAGTATTTGGTCTCTACTCGTCTATTAGAGGTTAAATTTGCTGATGATGAGGTGATTTATTTACCGAGTGATATGAATTACTTGGCTGCTCTGTAGAGGGATTTCTGCGAGTTGTCTGGGTTCTGGAGTTCATCTTTTAGGCTAATCATCTCTGAAGCTTTTGATTTGATTAGCTTTTTCTACTCCCGGTACTGGTTTCTTGTCTCGCATTTTTTAAAGGCTTGCTGTATGGTAGTTTGACTCTTTCTTCCCTGTACTTTCGTTCTACTTTTTTATGGTATATTCTATGTTAGCTCAATTCGTCTCGCAATATGTCTCTCTAGGCTACCTGCTGCAATGGGTTGGGCGATCGCC # Right flank : CTAGCGGTAACTAACAACAGAGGTGTAATTGAATCTCGTTCAAATTTCTTACCGGGTGACAAGGGGGTTGAAGATGAGATGTGGCAATAATTTGAGAAAATAAGGGGGTAAAAAAATAGGGGCAAGGGAGCCCCAAAACAACAAAATGTTACCACAATCATATCACAAAATTTTCCGAAAGCATTTGAGTGAACAGCAGTATTTGACACT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAAATTTAGACTTATCTCCATAGGAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : NA // Array 1 222305-222113 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJIA01000238.1 Cylindrospermopsis raciborskii S01 NODE_577, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 222304 37 100.0 41 ..................................... AGAAAATTCCACTTTGACGCAGAAGAAACATACTACGGTTC 222226 37 100.0 40 ..................................... AAATAGATAGGGGTGGGATACCCGTGGTATCCCCCCTATT 222149 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 3 37 100.0 41 GTTCAAATTTAGACTTATCTCCATAGGAGATTGAAAC # Left flank : ATGCTTTCAGGGTATTCATTTAGTTGAATATAACAATGAAAAACAAGTCTCTAATTGGACTAAAGATAGAGATTTTATCTTGAATCTTTTGCCAAATGATTGTTTACGTTATTATCGATTAGTAACTTAATTATTCTATCTACCAATTTAATTTATCATGTTTAAATGAGCTATTTGATTTACAGCTCCATTTTGCTATGTCTATAATCTTGTTTTTACCCTGGAAAAATTAGTCTATTTTATGATTTTACCTTGAATATCTTAATTTTATTTATTTGTTCACCTCTCTGGGTAATGTGAATTCTTATTGCTGCTTATTGAGAATAGATTTTGATGACATTTTTGCTGATTTACTGTTTCTCGAATGCTTTTTTCACTCTCTATGTTTATTTTTATGCTAACTTTGATTTTTATCTTAGTAATTTCCCTCCCTGATAGTTGAGGGTGCGGAATGTGGGTTGAAACACAAAAATCATAGATTGCATCATTAGATACAATGA # Right flank : TTTTTTCTTTTAAACGAGGTATCTTGTGCTACTGCAATCAAACTCAAATAGATATCAATGTGAGGTTCAAATACTAAACAAGCAAGACTAATCACTTTAAGTCGGAAGAATTTCAAGTTTCTTATTATTTCCAGAGATTGAAGAATAATAGTAAAATTGTTAATGAATTAGCAATGAGATAAAGAAATGAAATTAAAAATTAAACCGGTATATTATCAAACCAAGCTAAGAACATCAGTTCCATTTCCAGAACTGGGAAACAACATATCACCCTATCAACATCAAATACAAACATATTGTGCCATAGCTAGGAATCAAAATTATAAAACAGCATCGCAATGGTGCAATAACTGCGAGTTAGTTGAGAGATGTGACATTAATAAATTTCAGCCTTCAGACACCCATAATAGTCTTTGTATTATTAATTCAGCTATTACAGGCGGTGGCAAAACATTAGCTAACTATGCCTACTCTGTGGAACACTGTTTAAATACATCCTC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAAATTTAGACTTATCTCCATAGGAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 1 9194-10926 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJIA01000006.1 Cylindrospermopsis raciborskii S01 NODE_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 9194 36 100.0 38 .................................... TACTTAGAATTAGAATTAATCAACTTTGCTCCTTTCGA 9268 36 100.0 39 .................................... TTTTTCAAAAGTCCTAGCAGAAGCGCAAGAGCGTTATGC 9343 36 100.0 36 .................................... GAGGAACGGGAGTATGTTTACTCAAAATCTCTTTTA 9415 36 100.0 39 .................................... TGATGTTAATCCCCTAAAAGGGGAAAGGATAAAAGAGAT 9490 36 100.0 37 .................................... TTTATGAAGTACTTTGAAGTAATCATGTTTATGTTTA 9563 36 100.0 38 .................................... CTGAAACTCCACTTTTTCAAGTAGAATCCATCGAGCAA 9637 36 100.0 37 .................................... TTTAAACTTTTTTGTAAAAGCACTACTCTTACTCGTT 9710 36 100.0 40 .................................... AACGCTAAATACAACAAGTAGCAACACTTGATTTTATAGT 9786 36 100.0 36 .................................... TAAAAAACAGATACCAGACATCACAACAGATAGTGT 9858 36 100.0 37 .................................... TCATGTAATTGGCAGTCTTTGGAAGACATTAGCTCAA 9931 36 100.0 39 .................................... TACTGATATGTTAACTTGGTATGTTATAGGACAAAAATA 10006 36 100.0 36 .................................... GCAATCTCATTCGTAAGCTTAACAGAAGTATGATCT 10078 36 100.0 38 .................................... CCCACAACCTTGCGGACGTCCTCTAAAATCTTAGAATC 10152 36 100.0 44 .................................... CTATGGAATAAAGCCCATAGTGGCGTGCAAGACCCATTACCAGC 10232 36 100.0 40 .................................... GGACATCTGTTCAAGGGCAACATTAGTGTTAAAAATTTAG 10308 36 100.0 36 .................................... TGGTGACAAACCTTAATGGGACGGAGCCCTTTACTA 10380 36 100.0 36 .................................... CTGCGGAGGAGAAGAAGACTTTTCAAAATAATTAAT 10452 36 100.0 39 .................................... AGCTTCTATCACATTATACTGTGAAAAAGCTCCACCGAA 10527 36 100.0 37 .................................... CACCTTGTAGAGCCCTAGCTTAGAAGCTAGAAGACCT 10600 36 100.0 38 .................................... AAAACCAAATCAGAAACCTGGTTTCTGTTAACCAGGCA 10674 36 100.0 35 .................................... AGAAATAGCGGGGTTCTAAAGAAGCGCAGCGGTAG 10745 36 100.0 35 .................................... AGTATTTTGCTAACCCGTTGGCGGGTTATACCTAA 10816 36 100.0 39 .................................... ATTATTACTATTTATTTGATAGTATGTATCCTTATAATG 10891 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 24 36 100.0 38 GTTTCCATTGATTCCACTTCCCAGAGGGAAGCGGGG # Left flank : GATGACTACCTGTAATCCTTTTTAGATTCCATCCATAGCGTTCAACAATCTTACACAGAGACTTACCAGAAACGGATTTCATAAAGATAACTCAATTAACTGTTTTTGTGGTTCAACTTCTTCTTGCTGACTAGCAACTTCTAACCAACCTTGAACAGCATCTTTCAACATTTCTAATAAATGTTCGTAACTTTCACCCCAGGTATGACATCCTGGTAAAGCTGGTACAGAACCACACCATACACCGTCTTCTTCCCAAATAATTGCTTTTATTTTCATAGCCAATTCCTTGAACTAAGGATATTTTAGCGCAGAAGGAGTCAGACGTACCAGTTTAATAAAAATGAATAATCGCTGTTTGGGGAGTTGAGGAGGTGCGATCTTATAGCTTATTGTAGGCGATCGCTCTCATATTTTAAATTTCTCCCCATTCCCTAGCATCAATAAAAATAGAAAGATGCTTTTTATTGCTCGTGGCAATAATTACCTAAAGACAATGC # Right flank : G # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTGATTCCACTTCCCAGAGGGAAGCGGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 5446-8415 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJIA01000288.1 Cylindrospermopsis raciborskii S01 NODE_732, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 5446 36 100.0 38 .................................... TAGGGAAGTACGGCCGCAGCCGGTTCCATGGAACTCAA 5520 36 100.0 33 .................................... CAGTAATAGGAACCCGGGGAAAATCTATTTTCA 5589 36 100.0 38 .................................... AAACTTAAACAATAAAATTGAGCATTATTCCCCTCTAG 5663 36 100.0 39 .................................... GGGATATTCCCATACATTAAGCGGATATGTTTCCAGCTT 5738 36 100.0 39 .................................... TTCTTTAGCTTTCTCGCTAAATTCTAATAGTTTTTTGTC 5813 36 100.0 36 .................................... GGATTCTACTTGAAAAAGTGGAGCTTCAGAGCTCCA 5885 36 100.0 40 .................................... GTGTACCAGTACCACCCCTTGTAGGTGGTGGTACTGGTTG 5961 36 100.0 39 .................................... TATTCGAAGTCTTCTAAAACCTCTAAACAAACAACAAAA 6036 36 100.0 35 .................................... TTCCAGGTTATTGTGGGGTTATCTTTCCTTATTTT 6107 36 100.0 37 .................................... TGCGCTACTTCTACAGGCTTTGCGGCTACTGTAACTG 6180 36 100.0 38 .................................... GATAATAAACGTATTGCTTCAATACGTGATCTCCTGGC 6254 36 100.0 41 .................................... TCTAACCCCTCAACCCACCCTTCAACACACCACTCGCCCAA 6331 36 100.0 37 .................................... TCCTTCGTAATGTATAAATGGACTAAAAAAACCCCAA 6404 36 100.0 39 .................................... CAGTTTCCAAACCGGTCTGCCTCCACGAGGAGTTCGTGG 6479 36 100.0 40 .................................... CACTTAAAGATTGATAATCAAACAGATGGACATTTCTTTA 6555 36 100.0 36 .................................... TAGCTACCGCTCTTCTTTTATATTCTATTTATATAC 6627 36 100.0 38 .................................... AAAAACAGCCCCAAGGAGGGGTAGGAAAATGGAAATAT 6701 36 100.0 35 .................................... TCACAGAAGATTGAGATTCCTGTGGTTCTTGTACA 6772 36 100.0 37 .................................... ATATTAATAATGGGGAGGCATGCCATAAATTTTCCGA 6845 36 100.0 36 .................................... TGTAGATAAGCAAGAATAATATCCGTTATTTTTATA 6917 36 100.0 40 .................................... TCTTATTAACCACAAATTGGGGGCCCTCCCAGTTTGTGAA 6993 36 100.0 43 .................................... CCACTCGACCCAATACGGACAACAAATCTGTACGGCTCACCAG 7072 36 100.0 38 .................................... TTGCGTGTTCACGACGCTGAGCTATCTCCCTCTTAAAA 7146 36 100.0 38 .................................... TTCCTTCAGCTCCAATATCCCTTGTTTTGTTTTAAGGT 7220 36 100.0 38 .................................... TTCCGCTGAGGGAATCGATAAATGACTGGACGTGTATC 7294 36 100.0 35 .................................... GTTTAATAAGAGAACGCGAAGATGCGTGGGAAGAA 7365 36 100.0 38 .................................... ATAGCCAAAAAAATGCCACTAACAGAAACAGGTTAGTG 7439 36 100.0 34 .................................... ATATTTAGGTTCGGTGAGGATTTTTATAGTCTTA 7509 36 100.0 36 .................................... AAGGAGGATAAAGATAGCTATATTGTCACTCTTAAA 7581 36 100.0 37 .................................... TACCTCACTACCTGACGGTAGTAGGGCTTTTCTTCTT 7654 36 100.0 38 .................................... AAAACCTCCCAGTCATCAGAGAAGTCGAAGGAAAGGCG 7728 36 100.0 40 .................................... TCTCCAAAATGTGGATATGTATCTGGTCTTTCCTCCTCTT 7804 36 100.0 35 .................................... TTCAACTGAGTCAGGGTTGACGGATATCCTAAACC 7875 36 100.0 37 .................................... GGCAAATTTACCTGCCTCAATCCTAAATCTTTCATCC 7948 36 100.0 36 .................................... TTCTTTTTTAGAAAATATTGACAAAGAGGAAGTTTA 8020 36 100.0 35 .................................... TTCACGGCACAAGGAAGAATCCTTCTCATTGAAGG 8091 36 100.0 33 .................................... CTATTATCATTCAAATTTAACTAGAGTTCCCCC 8160 36 100.0 35 .................................... TTGTTTTCTATAATACTACCTACTCTGACCAACTT 8231 36 100.0 36 .................................... TTGAACTTGATTGCTTCCTTTTCAAAAGGAGCAAAA 8303 36 100.0 38 .................................... TTCCTCTTCCTCTGCCTGACGGTAGAGGAGGAGGGCTG 8377 36 83.3 0 .......................CT..CGG.....A | A,T,C [8403,8409,8412] ========== ====== ====== ====== ==================================== =========================================== ================== 41 36 99.6 37 ACCCGCTTCCCTCTGGGAAGTGGAATCAATGGAAAC # Left flank : AAAGCCATTATTGCAAGGATTTTGGCGTATACTTTTTAACTAAATGTAGTTATGTAATTTGGTATTATGTTTTATGATATTAAATCATAGCTATACATTTTTATCCAGACAATGAAATATACCTTTAAAGTTTTGCACCCGGTAACTTACAGTAGGCTATTTACAATAAAAATAAAATATACATAATTTTTAAGGAATTATTTTGCTGTAAATGTGTTATAATATGGGGGAATATAGGGTAAAATGGATATAAATATTTAAGTAATAAGGAATAATAATGATAAAAATAAAGACAAAAAAAACAGTAATTAACGAAGAGATTGCGAAGGTCAAGAAAAAACGCTGGAATGCCTATTATTTCGTCGGGAACCTCGCAGCCTTGTGGTGTAAGGGTTTCAGCCATTATTTTGAGGGTAGTGGAGGTGAAAAACAGAGAAATTTTGCTGACCTTCGCAAAGTGGGTCTAGACACCAGTCAGAGCAAGGGCTTAAAATGGAGGG # Right flank : AGTGGTCAAACAGCTTATTTAATAAGGGATAGAGCCTGAAAGCCACGCTGGAAAAAGAGGCGTTTATGAGGTTTGAGACCGATTAAGGTCAGAGCTAAATCAGCCCATAATTCCATGCCGTAAATCCATAATTGTCCGTAAACAGCAAAGCTAAAATCACTCTGACTTGGGTAATTGTCCTGATGTTGTTGAATCCGTCCGGCATAAGTCTCTATCCCTAATTTTTTCATCCGTTGACCGTACATAGTGGCTAAACTATAAGCAATCACAATTAATAAAACTAAGGCTAAAAAACGAGTTTCATTTACTTTAGTATCCTCTAGATTATAACNNNNNNNNNNTAGATTTGGTAGATTCGTTAAGATATACCAAGGTTCTTTTGGTCCTTTATGACAATATTTTCTCTTCCAATAAACAGCGATATTAAATAACCCTAATTCATCTCCTTTACCACATTTAACTCCCTGATAAAACTTCGACATCCCCGGCTTAAATCCTTG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCCGCTTCCCTCTGGGAAGTGGAATCAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 1578-1388 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJIA01000048.1 Cylindrospermopsis raciborskii S01 NODE_77, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 1577 36 100.0 38 .................................... AATTGGTTGACAACCAAAAAAAGGTGTGTTATGGTAGT 1503 36 100.0 44 .................................... TGGAAACCCCCCAGCCACAAACACATCCGCATTAGACTTAAATA 1423 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 3 36 100.0 42 GTCTTGACCTTCGTAAGAAGGAATAGGTATTGCGAC # Left flank : TTTAAAGTGTGATATTTCTTGTAATGGCATATTTATGAGCATAAAAGTGGAATTAAACATGAACGTAGGTTGGGTTGAGGAACGAAACCCAACGCCCCCATGGGTTACCCTACCCCTAACCCATCCTATTTCACGGGGCGATCTCGCCAGTGCGAGTGCTTCGCAATCGCTTGATTACTTGATTTTCCATTATATGGTGTCCAATAAGACCTGCCCACCAGTTATCGAGTTCGGAGGGGGGTATACCCCAGGTGCCATTTCTTAGGAATTGGGTGGGTTCTGGTTCCATGAATACCAATTGTTTTAGATCCCCCTTTGGTTATTTGTTTTGTAATGATAGGTTAGGGTTCTGGTTAAATATAATATTAACCTGGTAATAAAAACTTTGTCTTCTCTCTATAGGAATAGTTACATCTATCTTTAGACAGAAAAATCAGTAATTAACGAAGAAAGTGCGAAGGTCAACAAAAAACGGTTGGCACTTCTTCTGCTGTACGTAA # Right flank : GTAATAAGGTTGTTTCCAACAACTTTATTACTTAAGCTTCTCCGGTCTGAAGACACGGAGATTTCTGAAGAGTCCATAAACGAACTTTTTTTATTTCATCTACCTGATAGACAAATTCTGCATAAAATTGTCTATTTCTAGGTAAAATGCGTACTTGATTGATTTGAAGTCAAGGTTAGATGGCATTGGTAGACAAAAAGAATCTAGGTTCTTGCGTCTGTTTTATGGACAATTAATAGAAAAGTGCCAGTGTAATAAACTGCGTAGACGAAAATTGTTGAGGTTACGAAGTCCATATCCCAGTCGTTTAATCAACTTGAGTTTATTATTAATACCTTTAACCCAACTAAATTCCCACCTGCAACGAAGTGAGGTGGGAACTATCGGACTATATAAATGCTTAATTATTCGATAGACGTGCTTTTACATCCGTTGCAAAGTCTTCATATCTTCTCAAAGGAGTGACTTGTACATGGACATTTTGACCCATTTTTTTCATA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGACCTTCGTAAGAAGGAATAGGTATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.20,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 13661-9916 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJIA01000052.1 Cylindrospermopsis raciborskii S01 NODE_87, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================================== ================== 13660 36 100.0 36 .................................... TTAAGTACAGAAACGTCACTAATTGGAGTGACGAAA 13588 36 100.0 38 .................................... CGGATCCTCTATCCTCTTGTGGTCAAATGGTACTTTGG 13514 36 100.0 38 .................................... TAGGAAGCTAATCCTCAAAGAAGGGGCTGCACCTATTC 13440 36 100.0 35 .................................... ACGAAAACATGTCTTCCCATGAAATAGCCCACGAA 13369 36 100.0 35 .................................... ATGAATGTCCAGCAATTTTTGTTTTTGACTATTTG 13298 36 100.0 39 .................................... AGCCAGGATTGAGGGCAAGGGCCCTCGAGAAATCCTTCA 13223 36 100.0 40 .................................... TACATTGGATATTTGCTTTTGAGTCCAACTTGTTTTAGAT 13147 36 100.0 44 .................................... CTCAACCTTCATTGTCTACAAAGACAATAATAAGCTAGTGGTTA 13067 36 100.0 40 .................................... TAAAGAGTTAAGCTGTCTACCAACTGCTTCATTTAGTATT 12991 36 100.0 38 .................................... TTGGAGGGATTAACACCAATCCTCCATTTTCATCTTGC 12917 36 100.0 40 .................................... CTATCCCCACCGGGATGGGGATAGACGTAGAAGCTGTTCT 12841 36 100.0 35 .................................... GCATCTTTTACATGCTGAGCGTTTTTCTTCAAGAA 12770 36 100.0 39 .................................... TCCATAAACCCTTGTTTTGGGTTTTTATCTATTCTTTAA 12695 36 100.0 36 .................................... ATGTTTAAATTTCTTGTGAGGTTGTTTGGGGAGATC 12623 36 100.0 38 .................................... GGCGGGACGTCGTATTCACCACGGTGTTCGAGACACCT 12549 36 100.0 39 .................................... GTACAGAAATTGGAGAAAACAATAAGAAATACCCGGTGT 12474 36 100.0 35 .................................... TTAGAATCGAGTTCTACTCTAGTATGCTTGTTAGA 12403 36 100.0 35 .................................... TTAAGTCGCCGCAACGTTTATGACGTTGCAAATAG 12332 36 100.0 37 .................................... GTAGCCCCGGTAGCCCGGTAGCCCGGTAGCCCCGGAA 12259 36 100.0 37 .................................... GATGTTTAGGATCTACGAAACGCAAGTTTTAAGAGTT 12186 36 100.0 39 .................................... CCGCGCCTCTGACCGAGGCTAAAAAAGCAGCCCTTGCTG 12111 36 100.0 36 .................................... GTCACTTTCATATCCCAAACGGAGGAGGCACTTATT 12039 36 100.0 39 .................................... TTTGTTTTAATATTAAAGTACTCTATATTAAATTAGGGG 11964 36 100.0 36 .................................... TTAGGAGACCAATTCTTAACCCTCTGCTTGAAAGAG 11892 36 100.0 38 .................................... AAGTGGGGTTTTTTTGTTGTTTTGTATTTTAATTAAGT 11818 36 100.0 38 .................................... CTCCTCCCTCTTCCACCCCCAACACCATCCCAAACATA 11744 36 100.0 39 .................................... AAGAACCTTGTTCCAGGTTCTTCCATGTAGACTTTTTTA 11669 36 100.0 39 .................................... GATGAAGAGTTTCAATTGGCAGAACATAGTTTTCACCTT 11594 36 100.0 37 .................................... TCAACCTCACGGAAGAGGTACTTGACAAACTCGAGCA 11521 36 100.0 40 .................................... AAGGACACGATTGTCTAGTAAGTGAATGCCTTTATAGAAC 11445 36 100.0 40 .................................... TTCTGTATGTGTGAGGACAGGATGTCCTCAAAAAATAGTC 11369 36 100.0 36 .................................... TCCTAGGTATGGTAGTCGTTAGAAATGACGAAGACC 11297 36 100.0 37 .................................... CCATCGGGAGATGGCTCGCTGCCAGCCAGGTAGTGGA 11224 36 100.0 47 .................................... ACAGTACAAAAATGGGTCAGTTCAATCCAATGCTCTCGAAGAGAATC 11141 36 100.0 41 .................................... CCCCAAAATCTCCTAAAGAGGTAACTCCTCAAGAGGGATTA 11064 36 100.0 37 .................................... GTAAAATACCACGCAACAGCAGCATTATCCCAATACG 10991 36 100.0 42 .................................... TGGATTTAAGGTCGTCCAAAACAACCACGAACTCCTCGTGGA 10913 36 100.0 39 .................................... GTACCTTTAGATAAAGCCCGCCCCGGGGCTAAGCCAAAA 10838 36 100.0 36 .................................... TTATTTTTTTCTTTGAGTTCGGCAAACCTAATCTCC 10766 36 100.0 41 .................................... CTCATAGGCTCTTTAGTCCTTATTCCCCCTATTTACGGTTT 10689 36 100.0 42 .................................... ACTGTAGAGCCTGTAGAGCCTCCTGTAGAGGTTACTGTAGAA 10611 36 100.0 35 .................................... TTCCAGGTGAATTCACCTTTATCTACTTTGATGAA 10540 36 100.0 39 .................................... GATAATTTGTATTTCTTTGTTGGTAATAAACCTGAAGAC 10465 36 100.0 39 .................................... TGGAATAAAGCCCATAGTGGCGTGCAAGACCCATTACCA 10390 36 100.0 39 .................................... ACACGCTAATCTCTCCCCCTCTTACGGTAATTCTTTAGC 10315 36 100.0 35 .................................... TTGTTGTCTACGAGGACAATAAGCTGGTGGTTATT 10244 36 100.0 37 .................................... GGGAAGAGAGTATTTTAATAGGCGAGCTCGACGGCGA 10171 36 100.0 39 .................................... TCTACCACAGGAATCCCCTGTGGTTCTACCACAGGAATC 10096 36 100.0 37 .................................... GTTAAAATCCAAGTAGACCAAAATTATGATATCTTAG 10023 36 100.0 36 .................................... CTCATCGAAGCTTTTGCTTAGATGGGGTTTTTTCTT 9951 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================================== ================== 51 36 100.0 38 GTCGTAATACCTATTCCTTCTTATGAAGGTCAAGAC # Left flank : TAACTCCTTTGCTGCTATTAAAATTCCTCTGATTGTGACAATCATTGTTTTACTTCTAAGTACAGGAGTTGATTTCCTTGCTGGTTATATTGGTGCGAAACAAGCGGGTGCTAGTAAGTGGGGACAAATTGGCGCATTTGTGGGTTTACTGATGGGATTTTTTGGACTATTACCTGCTTTACCTTTTGGTGGACCATTATTAGGTATTCTCTTTGGACCTCTATTAGGAGCAATTGTGGGTGAGTTCCTTTACCAAAGAAGATTATGGCCTGCGGTGAAAGCTGGTATTGGAATCACTGTGGGAACGCTGGTGGGAAACTTGATTCAAGGTGTCCTAGCCATCAGCGCAGTCATAGTATTTTTATTGACAACTTGGTCCCAAGTATACTGACCCACTTACTCCTGCTATATTATGACGATGATTGCAACTCTTGAAGAATTGCCTTTTTCAAGGTCAAGACTATATCGCTGCAATCCTCTTAGTCCCATAGCATTAGATA # Right flank : CCCTCCATTTTAACCCCTTACCCTGACTGGTGTCAAGACCCACTTTGCGAAGGTCAGCAAAATTTCTCTGTTTTTCACCCCTACTACCCTCAAAATAATGGCTGAAACCCTTACACCACAAGGCTGCGAGGTTCCCAACGAAATAATAGGCATTCCAGCGTTTTTTCTTGACCTTCGCACTTTCTTCGTTAATTACTGATTTTTCTGTCTTTATTTTTATCATTATCCTTTACTATTACTGAAATATTTATACCGATTTTTCCCCATTTGTGCCACTATTATAACACATTTACAGGAAAATAATTCCCTAAAACTTATGTATATTTTATTTTTTTGAGACCACTTCATTCTCACCCCCCATTAGGTACTACATTGACTGGGATATTTCATTACTCGCATAAAAGTTTTTAGGTTAGATAAAATGTCGTAAAATACCTACCCAAACCCCTATCTTACCCAAATATCTATCTAAAGATAGATGTAACTATTCCCATAGATAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTAATACCTATTCCTTCTTATGAAGGTCAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.70,-5.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 194-1991 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJIA01000057.1 Cylindrospermopsis raciborskii S01 NODE_92, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 194 36 100.0 37 .................................... TTAAACCTCCTTCGTAATGTATAAATGGACTAAAAAA 267 36 100.0 37 .................................... AAAAAAAAGTCTTTTCTTTGAGTTAACCTATTAAAAC 340 36 100.0 35 .................................... GAAGTTAAAGAAGCCGTATAAAACCCTGATTTACG 411 36 100.0 42 .................................... GGTTTTGAGTTTTTGATTTTTTGATCTGGATATTCCTCCATA 489 36 100.0 40 .................................... AAACCAGAAAGGGAGAAAGAGAATATGGAATTAACAGAAT 565 36 100.0 36 .................................... TCTCCTGCAAAGGCAAACTTGTCTTCCTTAAAGAAA 637 36 100.0 33 .................................... TTGAGGATTTTATCTTGTGCCACTCTGTAACAG 706 36 100.0 40 .................................... GATCGAAGTGGAGAACTATGTAGTCCTCCCTTATAATAAA 782 36 100.0 39 .................................... GTCTTAGCGTACGTTCCTGCTGTTATCCCTAAATTCATA 857 36 100.0 41 .................................... TTAAAAGAAAAGAGGTAGCCGCCCGGCTACCTTATAAGGGT 934 36 100.0 37 .................................... ATATCGTAATACCTGAACATTTTTAGTGCTTTTTTTT 1007 36 100.0 36 .................................... GTCTCATTTTTGTCCTATAGTAGCAAGACTTTTCCT 1079 36 100.0 36 .................................... GTCTCATTTTTGTCCTATAGTAGCAAGACTTTTCCT 1151 36 100.0 36 .................................... TTCAATGATTTCATATTTATTACTTAGATTAAATGA 1223 36 100.0 36 .................................... GGCAGGGTGGTGTCTGGGGATGTCTTCGGTTTCCCA 1295 36 100.0 39 .................................... GAAGTAATTAAAAAAATCTTGTTCATACAGATCGAAGTG 1370 36 100.0 36 .................................... GATGATGTTCCCATATAGTTGATGGATATGTTTCGA 1442 36 100.0 37 .................................... GAATCCTCGGGAGTAAGGATAACTTCTGAGGATTGAA 1515 36 100.0 38 .................................... TCGGCTGGAGTTGATGGCATAACCATAGACAAAAAAAA 1589 36 100.0 37 .................................... GAAGAAGTTTGATCATATGGATCAAACTCACAGAGGA 1662 36 100.0 38 .................................... GATTGCTCAAGAAATCATCCCTCCCCAAGGGTTTGACC 1736 36 100.0 37 .................................... GAGACTGTTACAAGGGGGTTTGATTGGATTACCTTTC 1809 36 100.0 38 .................................... CCATTTTAACCACTAAGCAATCAACTTCTATTTCAAGT 1883 36 100.0 37 .................................... GTATAAGTCGAAGTGTTTATCTAACACTTCTTTTAAG 1956 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 25 36 100.0 37 GCCCGCTTCCCTCTGGGAAGTGGAATTAATGGAAAC # Left flank : ATTAACGAAGAGATTGCGAAGGTCAAGAAAAAACGCTGGAATGCCTATTATTTCGTCGGGAACCTCGCAGCCTTGTGGTGTAAGGGTTTCAGCCATTATTTTGAGGGTAGTGGAGGTGAAAAACAGAGAAATTTTGCTGACCTTCGCAAAGTGGGTCTAGACACTAGTCAGGGCAAGGGCTTAAAATGGAGGGG # Right flank : CACTCGGAGTTCCATAGCCCTTGGACACAATTGTATTGTTGACGTCGCTGTGGCAAATAACTGTATAATCGGGTATATACGTTGCCGAAAAGATGGAATATTTGGACTCTATGTCTACGACCTGCTCGTTTCCAAGCAATGGAGGGAAAAGGGACGAGGAAAACGTCTTATTGAAACTGCTGCTGCTGAGCAACCACGTACATGGGAACATTTTCTTGATGTCTGGGAAAATTAAACTCTTTCTCCATTGGCGATCGCATATCGAAACTCAGGGAGAATAACATACCACTTACTCCCAAATAGGATTTTAAGCACTCCCTATGGGAAATCGCATCTCATGGAGCGAATAAAACAACTTTTGAATATCCTATCTGTCAGGCGATCGCCCATCTTAGAACTCTCACTTCCTTACCCACATAAAACAACTACTCGAAACCCCTATACACAAGAGCGATCGCATCTCCTGGTGTTACCCCAAGAAATGCGATCGCCTAATAATG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCGCTTCCCTCTGGGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 1 3342-394 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJIA01000063.1 Cylindrospermopsis raciborskii S01 NODE_107, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================================= ================== 3341 36 100.0 39 .................................... CTAAATTAGCCGCGCGGTGACTAACTCCTAGTTAGCAAT 3266 36 100.0 42 .................................... GAAAAAACCGCTAGTGACCTAAACTAGCGATCGCTAAAACCC 3188 36 100.0 38 .................................... GTCAATCTTACCTCTGGTAAGTTCACAGCTTAGGATGG 3114 36 100.0 35 .................................... AGAATGTCCTCAAAAAAGAGGCCATTAATAAACAC 3043 36 100.0 37 .................................... AGGTATTAGCAAGAAGTAAGTGTGCATAGGTTAAAAG 2970 36 100.0 41 .................................... TAGACAATATTTACAGCACCTGGTGTGGTTTTAGGTAAAGC 2893 36 100.0 43 .................................... TCTTGAGGCAGAGAGTCAACAGCTGATCTCCCAGCTCGCGCGC 2814 36 100.0 37 .................................... GTATAGGGGAGGGATCCCTAACTGTCCCCAGCTTATT 2741 36 100.0 36 .................................... TTAGAAACCTCCTTTGTAATGTATAAATGGACTAAA 2669 36 100.0 38 .................................... GGTTTCTAATGGATTCTGACGACTATTCTACTTTTACC 2595 36 100.0 40 .................................... TCTTTAGCAGGTTCACTATACCCACCAAGTTGTACCTCAT 2519 36 100.0 35 .................................... CAAATAATTTTATCGTGATTATTAAAATCACAAAC 2448 36 100.0 34 .................................... TAAGCAAGGGCTTCGATGGGGTTTGTTTGTTATT 2378 36 100.0 38 .................................... TAGGAGAACGAAACGCAGCTACAGCGTCATTTCCCCTA 2304 36 100.0 35 .................................... AAGTTATGGGCTGTGTTAAAAGATTCAGATTTTAG 2233 36 100.0 55 .................................... CAGAGGGAAGCGGGCAATAGGAATCTGTGAAATCGAACCTACAGGTTGACCGTCA 2142 36 100.0 35 .................................... TTGCTAGTATAGTTGTTACCTCTATACATAGCAAT 2071 36 100.0 35 .................................... GCCCATAAATTTAAACCTTAATCTCAGATAAAGCT 2000 36 100.0 43 .................................... AAATAGAAGTAAAAGGCTGGAACAATGCTGAATCTGTTATCAC 1921 36 100.0 35 .................................... AGTAAACAATGTACCCTTTTCTAGTATGACTAAAA 1850 36 100.0 40 .................................... TCAGAGCACCCCAAGTTTGGGGAGTTGGTAGCCGTGATTG 1774 36 100.0 36 .................................... ATTTTATTCTGGTGCTTAAGCCTTCGGGCACTTCAG 1702 36 100.0 37 .................................... GCGAAAGGATCCACCTCATACTCAAGAGCCTTATAAC 1629 36 100.0 42 .................................... AAATTACGTAGCTGGGTTACTAACGGCTATCAATGGATCGAA 1551 36 100.0 38 .................................... TTTTATTCTTTGCAGACCAATTCATCAATCATTATCCG 1477 36 100.0 38 .................................... AAACTTAATTTAATAGCGCTTTAACACAACAATTAATA 1403 36 100.0 45 .................................... ATAAACAACCAACTGGACGAGGGTTGTCTTTGTCTGCATACACGG 1322 36 100.0 39 .................................... GACTGTAATAGCTGTTCGGGTGTATTTCTCAGAAATACG 1247 36 100.0 38 .................................... TGATCTGGTTCTGGAGTTCCTTCAGCTCCAATATGTTT 1173 36 100.0 46 .................................... TCCCAGTTCTCTAGCTAACCAGGCTAGGGGGTTTTGCCGAAGACAT 1091 36 100.0 39 .................................... AAGAAAAAACCCCATCTAAGCAGGGGCTTCGATGGGGTT 1016 36 100.0 36 .................................... ATTGTTAGGGCCCGCGCCTCTGACTGAGGCTAAAAA 944 36 100.0 38 .................................... AACTTGGTTTCTTTAACCTCTCCTTCTTTAATATGAAC 870 36 100.0 37 .................................... AACAACTCAATGGTGTTTTCAAACCTATTACCATTAA 797 36 100.0 37 .................................... GATGTAGGAATTCCACATTCCTTAATCCATGACTGGC 724 36 100.0 38 .................................... ATTAATTCTAGGGGACAAATTTTGCTAGGATCAAAATG 650 36 100.0 34 .................................... TTGCAATAGTTCGTTCGGTGTCTGTTTGATGTAA 580 36 100.0 40 .................................... TTCATAAAAAGAGATAGGGTTTCCGCTGGGGGTTAGTTGT 504 36 100.0 39 .................................... GACTCAAGCATGAAGGTGTAAACAACCGGTTCCTCAATA 429 36 83.3 0 ..G.....A.....................A..GCT | ========== ====== ====== ====== ==================================== ======================================================= ================== 40 36 99.6 39 GCCCGCTTCCCTCTGGGAAGTGGAATTAATGGAAAC # Left flank : AGGATGAATCAGTTATTTTAAGGATTTTTGCGTATACTGTTTGACTAAATGTAGTTATGCGATTTGGTATTGTGTTTTATTGTATTGAGTCATAGCTATACATTTTTGTCCAGACAATGAAATATACTTTTAAAGTTTTGCACCCGGTAACTTACAGTAGGGTATTTACAATAAAAATATACATAAATTTTAGGGAATTATTTTGCTGTAAATGTGTTATAATACGAGGAAATATAGGGTAAAATGGATATAAATATTTAAGTAATAAGAAAGAATAATGATAAAAATAAAGACAAAAAAAACAGTAATTAACGAAGAGATTGCGAAGGTCAAGAAAAAACGCTGGAATGCCTATTATTTCGTCGGGAACCTCGCAGCCTTGTGGTGTAAGGGTTTCAGCCATTATTTTGAGGGTAGTGGAGGTGAAAAACCGAGAAATTTTGCTGACCTTCGCAAAGTGGGTCTAGACACCAGTCAGGGCAAGGGCTTAAAATGGAGGG # Right flank : TGTTGGGTTTCGTTCCTCAACCCAACCTACATTCCAAATTTAGCTTTGCCGACTAAATGGCATTTCCAGTCCATCTATTAGAGCTGTTGGGAAATAAAAGCATATTTCCGGATGACAGAACTTCCCCCATCCCGATTGAATTTATGCTGCATCTAAATAGAAGTTCCATAGCCCTGCACTGACCAACATCAATTGATCATCAAAATCGGTCACACGATTCCTATATACAAAATGTACACAGTTATATCTCTTAATTCCAGAGTGAGCGTGCTCACACACAACTCACTGACGACTCAGTTCTCGATTCTCCTCCTTTTGCTGCTGTGTTAACTCCTTACCTTTCGGTTTCTTGTGTGGTAAATGGACATTGACAAATTCTTTCTCCAACCCATGA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCGCTTCCCTCTGGGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //