Array 1 15679-14910 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018210.1 Calothrix brevissima NIES-22 plasmid plasmid3 DNA, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 15678 36 100.0 37 .................................... GAGCTTCTTTAGCTCTTAGTTCTGTGATTTCCTTTTG 15605 36 100.0 38 .................................... TTGATTTATCTACCGCAACGTAGTGAGTCTTTTCTTGG 15531 36 100.0 37 .................................... TGAGTGGGCGCTTTTTGAGCCGGAGTGCTAAAAACAA 15458 36 100.0 37 .................................... GCAAAGAAGAGTTTATGAAAAGGTGAGGGTTCTTTAC 15385 36 100.0 40 .................................... TTTCCACCAGTAGCATGAGAGTTGTTAGCAATGTCTGTGA 15309 36 100.0 38 .................................... GCTCTTAGAAGGGATACTTCTTTTTGTGTCGCTTCCCA 15235 36 100.0 36 .................................... TTTTCATCAGCCCAGTACTCACTTAACCCTTGTAAA 15163 36 100.0 36 .................................... ACGTAATCAAGGCGGCTTTGGCATTCGTTGCGATGC 15091 36 100.0 37 .................................... GAAAGGATTGTCTGAACTCAAACTGCTGCGTTTTTAA 15018 36 100.0 38 .................................... AAGAAGGATAAAGCGTCAGGTACAGGGTTGTTCTGCCC 14944 35 86.1 0 ....C.....G..........A........A-.... | ========== ====== ====== ====== ==================================== ======================================== ================== 11 36 98.7 38 CTTTACGATCACATCGCCCCGCAAGGGGATGGAAAC # Left flank : GCGATCGCACTCCCCAACTTTTTCCGACCCTACCAACCTCCGCACTGTTTCCAAATCAGTGCTATCACCCACAATTAACCTATGCTCCCCTAATTGCCAAATATCGCTTAATTTGCATTCATTCTCTTTTTATTGTGATAATACTTCAGATATCGGCGATTTTTGCGGCTTTTGATGGTAGCGATGGGTATTGGGCGATCGCCCGTTAAAAAATCAGTTTAGCGATCGCATCCATCGCGCAACCATTAACTTTTCTGTCCAAAACTTGACAGCTTGAAGTAGCACATTTTACCCTTTACCCTAGTGTGTTGCATTCCATCTACACACCTCGCCTGAACCTTGAAAACCGCATAATCTCGTTGACCTGTGTCGATGCTTTGTCCAGTAAGGCTTTCAGGCTACAAAATTGATGCTTTTTTGAAAAAATTTGTGTGTTTTTCAGAGGTGTGTCGATTAGGGTATCTCAAACCCCCTCCCTGTAAGGCTTCCAGAAGTGAACT # Right flank : TGCAAAGCCCCTCCAGAATTGCCTGAAAGGGCTTGATTTTAATTAGCGATCGCCCAATGCCCAATGCCCAATGCCCAATGCCCATCCAAGGCATCCTTGATTTGATACACCAGATTATCAAGATTTGAAGCCGATTTGCTGTATCAAAGAAAGGTTGCCCCCAATGTTGCTGGTTAGTGTGCGATCGCATCTCTCAACACTTCCCTAGACAAGCCAGTTAAAGCCTGTGCCTCAGCAATGGGCACTAATGGCTGAGTGTCTGCCTTGCCTAGTAAAGCCTCAATGATTCCAGATATCTTTTCAATTACGCCAATTTCGCTCCTCTCCTCAGCCTCGTCAAAGGAAGCAATCTCGCCAGAGTTATGTGTGAGTTTATCTGTCTGTTGCTGTGGCTCTGTCGCAGAGGAGCGAGATTCAAAAGCTGGTTTAATCGTTGGCTGTTATAGTTCTGCTTTAAAGGTTTCTAATTATTTGGGGTCAAAGTTGGCGGTCGGGCGAGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACGATCACATCGCCCCGCAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.60,-8.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 502602-506041 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018207.1 Calothrix brevissima NIES-22 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================ ================== 502602 37 100.0 35 ..................................... CACTAAATATTGCGTCAATTTCCTCGCGGCTTAAA 502674 37 100.0 34 ..................................... TGCTACTTCTTCATAAGTCAGAAATCGCCCGCTT 502745 37 100.0 36 ..................................... AAAGTAAATGCCAAGACCAAGAAAGTACACGGAAGA 502818 37 100.0 35 ..................................... AAAGGACATGAGTAACCCCTCTGGGGATTCACTCT 502890 37 100.0 41 ..................................... GTTATTCTCGTCGGTTATAAATTCGCCTGATTCTGTGACTA 502968 37 100.0 36 ..................................... GGTAGCGATATTCAAGAAATCATTCAAAGCGTTCAT 503041 37 100.0 34 ..................................... ATTAGTTAGCGCCACCTCTTAGCGGGTGGCTTAT 503112 37 100.0 39 ..................................... ACCAGCAATAGCAACATTAGGTGGGACGAAATCGTGTCC 503188 37 100.0 34 ..................................... GCCACTTCATCCCCAATCCACAAGGCAACACGAT 503259 37 100.0 35 ..................................... TGTATTAGTCAGAGTATTTATCATATCAACTAATC 503331 37 100.0 32 ..................................... CAGTGTTCACAGGAGCAGAGCGAATGCTTTCC 503400 37 100.0 38 ..................................... TTCAGTTAGGATTTTCACCTGGGTCTTGAGTTGCTCAA 503475 37 100.0 35 ..................................... GAAATACGAACCGCTACAACAAAAACATCTAGTAA 503547 37 100.0 35 ..................................... GCAACCTCAACGGCGGCGGCTCCGCCGCGCCTCCA 503619 37 100.0 35 ..................................... ATTTTTCCAACCATTCTTTTATAAATACTGGCTTC 503691 37 100.0 36 ..................................... TCAAATTCACTGAATACATTCGCCAGAGTGCGATCG 503764 37 100.0 35 ..................................... TCAGTTTTACCCGCTTTCCATTTTCCTTGGATCGG 503836 37 100.0 34 ..................................... CTTTTGTTGATTTGAGTGCAAATATCTCTGCTAT 503907 37 100.0 35 ..................................... TCTCCATCATAGGGGTCTGATACCGGGGTATCAGT 503979 37 100.0 34 ..................................... ATCTTCCCAATATTCATATCTATCGAGCTGCACA 504050 37 100.0 32 ..................................... ACAGCTGTACCGCCGACTGTAGTAGGCGGAAC 504119 37 100.0 33 ..................................... CAAGCTGAAGTGGGGGTAGTGCGATTGCATTGC 504189 37 100.0 34 ..................................... GCAAAGCTTGTACAGCCAACAGTCAAGGTATCAC 504260 37 100.0 39 ..................................... TATGCGATCTAAGGGATAGTAGTCATCGTCAACATAGAA 504336 37 100.0 38 ..................................... TCTTGTAATGTCTTGGTAAGATCTTCTGCTCCTGGGGT 504411 37 100.0 37 ..................................... AGGACAATTTGTAGAAGTTTATATCGTTGCCAGATAG 504485 37 100.0 34 ..................................... CCTTCAGCGTAGATCCTCCTATTCTTGCTAACAC 504556 37 100.0 34 ..................................... CAGAGATATCTGACATTGAACTAAGCACTAAATC 504627 37 100.0 36 ..................................... CTGTGTATACGCTCTAGCAAAAGAGGACTGAGGAGA 504700 37 100.0 37 ..................................... TGGGGAAGGCTGGGGAATCACCAGACAACCCAGCCGA 504774 37 100.0 35 ..................................... GTAGCGATTTTCTGGCAGCAACAAAGTATCATATT 504846 37 100.0 35 ..................................... ATTCTCAGTCAATATCGGCATTTTTTCTTTCAGAA 504918 37 100.0 34 ..................................... ATCATCATCTTTCAGGATAATAGTTGTATAACCC 504989 37 100.0 35 ..................................... AAAAAATCAACTGACGGAACAGAAGAAATTATTTG 505061 37 100.0 35 ..................................... CCTAAGATATATTCGCAAAGCAACAAATATTTAAG 505133 37 100.0 34 ..................................... GTTGCACCCTTGCGGTTTGAATTGCTGTTTAAAA 505204 37 100.0 35 ..................................... ATCACCTTTTAAGCCAATCAAAGATAAAACATTAT 505276 37 100.0 36 ..................................... ATCTTCACTAGCGCCAGATATAGCCCATTGAACTAA 505349 37 100.0 48 ..................................... CTGGATTTGTACTATTATCTACACCAAAGTACTTGCGTGGCACATCCC 505434 37 100.0 34 ..................................... TTGAAGACATCTATGATCCATGCCCTATAGGCGG 505505 37 100.0 33 ..................................... CCCAAAGGTAGCACACCGAAAGAAGTATGCGAG 505575 37 100.0 32 ..................................... CACAGCTTCGCGCCGCCTGCCATGTGGTGATG 505644 37 100.0 38 ..................................... TTTACCCTGTAAACGTTTCAAGTCTTTGAATCCGCGAT 505719 37 100.0 32 ..................................... AGAATCCGACCGGGAAGGAATTCTAAAAAACC 505788 37 100.0 35 ..................................... TCGATTCCTTCGCAAGACTTGAACAACAACAGATA 505860 37 100.0 37 ..................................... GCTGTAGGAGTAGTGCCACTAGCTAATACTGTACTAC 505934 37 100.0 34 ..................................... GACACGCGAGCCAAAATCCAAGCTTCTCCATTAC 506005 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================================ ================== 48 37 100.0 36 GTTGAAATTTCAAATAATCCCTATGAGGGATTGAAAC # Left flank : CTTTTGGAGAAATTTTAGTTTAAAGGACATGGTACTATCTTGTCCTATCTCTAAGTCTAATGTTTTGAGTTTGTAATTTTTTAAACATCAACTTAAACATTGGTTTGACCTTTGCAGATGGTTTGCTACAATCAGACCAATGTGGCTGAATGCACCCGCTATTAAAGCATCTTGCTTACATCCTGGCAAGGTATCTCTGTTTTGGCAGGGGACAGGGAGCAGAGAGTCTGGAAGTCTCCTAATATGTCTACAGCCAAAATTTTCTTGGCAGAATGCGCGAAGGGGTAGGTGTAAAACAAGAAGCTTGCAGAAAAATTGCTGAAACTCTTTATCTGTCAGATTTGTAGCGTTTGATTACTATTGAAGCACTCGCGCGCCTTATGCAAAGAGACTTTCAGTCATTTTGGGTTTGCTGGTTCTCTATTTTGCATGTTATGATTACTCCATCCGCGCTACCGAACCTTGAAAACTCCATATTACTTGACTTTGAAGCTTCCGCA # Right flank : CCAATGAATACCATGATTACGGCTGATGGTACGATAGTTGAAATATGTTGGGTTTCGCAAAGCCTCAACCCAACCTACACCTAATTTAGTATTTTAGCTGTGTCAGTCTACTAGGTAGATTTCAAAAATCAAATTATGAATTGTATGTATTGCTAAGTTGCAAAATTAGCGATCGCACTAGCTAATGAGGTAGGTTTTAAAATTAATTCGGCAAAAGCTGCATTCAAATGTCCCAAATCTGGATTTGCTGTCAAACTCAGCCAAGTTTTGATGCTTCCTGGTAAGTCAGAATTTAACCGTAAAGGTATTTCTGGTGTAGACAAGGATTGGGCGTAAGCTGGGGTAAGAAATTGTTGGTAAATTTTGGCTTCTGGCGTTGATTGTTTGACAAAGGCTAAGGTAACGCCACGAGTTAATTGACGCAGGGAATCGGTTTCTTTACCGCGCTTTTCTTTGACAATGGTAGTTACCTGACTCATGCTATAGGCAGGATCGCTAAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCAAATAATCCCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 2 646140-647113 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018207.1 Calothrix brevissima NIES-22 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 646140 36 100.0 35 .................................... GCTGACGAGGCACTAGCAGATTCGTGTTGTGAATC 646211 36 100.0 38 .................................... TTCAGGGTACTGAGCCTTTAAGCTGGTTAAAGCGTCAA 646285 36 100.0 35 .................................... AAACAGTCAGCAGCCATACCAAACTGCAATATAAC 646356 36 100.0 39 .................................... GTTCTTGATCTGCTGATAAAACCAGCTTAAGCGCTTCAA 646431 36 100.0 35 .................................... TTCCGAGGATTGGTCATTAAAAATGATCGTGAACC 646502 36 100.0 40 .................................... ACAATCACTAAACAGCCGGAAAGAGCAGCTATGGCCACAA 646578 36 100.0 36 .................................... AAAGCAGAACCACCAAGCACTGCTAATAAAGCAGAA 646650 36 100.0 35 .................................... TGTATGGTTAACTTGGTAGGATCGACCTCGCTGGG 646721 36 100.0 32 .................................... GGAAGACCAGAAATGCCGCCGCCACCGGTTAC 646789 36 97.2 36 ..........A......................... TCAGCTTGTTGCGGGTTAAAAGAAAAGGAAAGCAAA 646861 36 97.2 41 ..........A......................... CCGTTTGGTATAGTCACGTAGCGATTTTTGTCGCCTTGTAC 646938 36 97.2 31 ..........A......................... ATTCTCAGCAGCTTGTACTACTTTGAGTTTA 647005 36 100.0 37 .................................... GTTATACAATCAGCTTTAGGGTAAGAAGCTGTATGAA 647078 36 80.6 0 ..............TA....TC.C.......A...A | ========== ====== ====== ====== ==================================== ========================================= ================== 14 36 98.0 36 CTTTACAATCGCATCGCCCCGAAAGGGGATGGAAAC # Left flank : GCTACACTTTATTATTTTTAGCGATGCCGAAGGCAGGCTACGCCTACACATTTTTTCTCAAAACAAATTGAGTAATTGAATCTAGACACCTAATTTAAAATCCATCATTCATAATTTATAAAATTATCGTTAATTGTAGGGGCACTGGCACTGCCATGCCCTGAAGCGCGGTAGGTTAATTAAGACAGCCGCTACAAAAACAGGCGATCGCATTTTTGAAAAAAGCGCGATCGCACTGAGTTATTTGTAACAAAAAGGTAACAAATTTGACTAAAAAAAGACTGAAAAGTTATATTTAAAAATAGCGTGAGTCGTTCATCGACACACCTCGCCCGAACCTTGAAAACCGCATAATTTCGTTGAGGTGTGTCGATGCATTGTACAGCAAGGCTTTCAGGCTGTAAAATTGACGCTTTTGGGAAAGTTTTTTGTGATTTTTCTGAGGTGTGTCGATTAAGGGGTCTGAAACTCGCTCCTAGTAAGGTTTCCAGAAGTGAACT # Right flank : ATTGAATGAAATCTTGTACCCCTCACGGGGATGGAAAGTTTGAGAAGTCTCATGCGATCGCATAAATCAAGAGATAATTGTAGCGACTGGATTAAAAACCATGCGATCGCTTAAATTTAAAAATTTCAATAGTCAATTCTGGGGGGTACAACAAGGAACAATCGGCGCAGAAGTTGAGTTTTCTAAGTTTGCTTGTTTAAGTAACTCATTCCAAGCGGATGTAATTTCTGAATCTTTGCGTTTATTTCTTTGAATTTCTTCGCCTAAAGTGGTTAACGCATTATACCAAATGCCGTTTTTAGCAAAAATTGCTGCTTTATCTAAAGGTGTTTGAGCAGTTTCCAGTTGCTTTTGTAATGTAGAGTTCAGCGCAACTTGTGTCATAGAACCGCGAACGTAAACAGATGAAGAGGGTTTTTCTGGATCGCAGTAAATTGAAAATGTCCAACGATAGGTTTTACCAGCTACTAAGGGTGTTTTTGGCTGTACAGCTAGGTTAA # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACAATCGCATCGCCCCGAAAGGGGATGGAAAC # Alternate repeat : CTTTACAATCACATCGCCCCGAAAGGGGATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.10,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 685430-683733 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018207.1 Calothrix brevissima NIES-22 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================= ================== 685429 36 100.0 42 .................................... GTATTAGCCTGAGTCTGCAACGCGGCTGTACTAACTCCATTA 685351 36 100.0 34 .................................... TAGGTCAAATCTGTCGTGTTGGAATACACATGAA 685281 36 100.0 41 .................................... TATATACCTCCCTCAGCTTAATTACCCCAGCACTTATTGTT 685204 36 100.0 37 .................................... TGTGAATAAGTCACTAGTTAGGCAGAATACAGGCCAA 685131 36 100.0 44 .................................... ATCGGTGTGTTCTAGGAATATTCTGGAAAAGAAGCTCTCGCTGA 685051 36 100.0 41 .................................... TAACCATAATTATTTACTCTTAACTAACATATCTTTTGGGA 684974 36 100.0 33 .................................... TGTAGATGTACAATCCCTTAATGTTACTGTATC 684905 36 100.0 38 .................................... CTAGTGATAGTGAACTATAAAGAACATGGTCAAGTATT 684831 36 100.0 42 .................................... TAGAACGTCTGAGATTGTAGATACATTTTTTAAGAATCCAGA 684753 36 100.0 35 .................................... TCGATCAGCAATTGCTGGTCAACCTGATGGTCATA 684682 36 100.0 41 .................................... GTCGCCTTGCTCGGTGCGTCCGGCTGCGGCAAGACCACCCT 684605 36 100.0 49 .................................... TTCCACTGGCTCGCTATTAGCAGCAGGCAGGATTGTGAATAGAAGGTAA 684520 36 100.0 45 .................................... TTGGTATTTACCGTTACGATCGCCGTAGGTGACGTTACACGGCTG 684439 36 94.4 43 .........A.T........................ CTAACTAGATAGTAATTAGGATCTTGTCCTAAGTCTCTAACGT 684360 36 94.4 41 .........A.T........................ TTAGTATCCAATTACTCTACAAATTAACAATCTTAAGTAAA 684283 36 94.4 40 .........A.T........................ TTCTGACATACAACGAATTTGAACTGGATTGCACTTTCTG 684207 36 91.7 34 .........A.T...................A.... CTTTTAGAGTTACAATCACTATCTACTTCATCTT 684137 36 88.9 37 .........A.T......T............A.... TCACTTTGTAGATGATGGTAGTCAGTACTTTTTTGCA 684064 36 94.4 37 .........A........................C. TGACCATGAAACTCTACATGGACATCGCTCAAAAGTT 683991 36 97.2 40 .........A.......................... ACGATAGTACAGTCTTGCTACTTTGTGTTAGAGTGCAACA 683915 36 97.2 37 .........A.......................... ACTAGTAAATCTTCGTCGGTTAACGGTGGTTTAGCCA 683842 36 97.2 38 .........A.......................... AGTACAAAAATATCTTCTACAAAGTAGTTCTCAAGATA 683768 36 88.9 0 .........A....................TA...A | ========== ====== ====== ====== ==================================== ================================================= ================== 23 36 97.3 40 GTTACAGTTGCCCTTACCCCGCAAGGGGATGGAAAC # Left flank : AAGTTAACTGAGAAGGAACCGAAGCAAGCTAGTATTCTCCATGAGGGACAGGTGGTGAAGGTGAAAATTTCGGCTGTTAAGGATGATGGGACGATTAAAAGCGTGAAGTATGTAAATTAACTCAGTGTTGCTGCTTTAAGTTTTTTATAGGTAAGGCTTGACGAATATATGTCTGTGAATTATGTTATTTACATTGCAAATTTTTAGTTAAGTTTTACGTGCTTTCTCTAGGCTTAATAGAGAACAGAACCTTGAAAATTGCATAAATATCTTGGTTGTGAGGGTAGATTTCCATACTACCCTGAAAGGAAAAAGCGGTTTTGCGGCCGAGTCGCCAAATCGCTGAAACCCTAGTTTTCTCGTAGACCCTGCCGATTGCTTATTCTGTAAGCCTTTCAGGGATTTCTTCTAGTTATTTTTGGACGGGAGAAAAATAAAATGAGTACCCCGTCGCAAACCGCCTCTGGAAGCTATGGGTGATAAGGGTTTCAAAGCGAGGG # Right flank : TTAGGTATGATATTTATTCAGATTGTTAACCTATAAACTTAGGCTGAAAAAGAGCGATCGCATTTCCTGGAAATTTTCTAATTGATTGGTAGAAATAGGAATCTCTGAAGGAAAATAATCTGATTAAATTATGTGATATCAATTTAATTAATGATTGTGTGTTGTGGATTGTCGTTAAGGGTGGGGAGACTCTGGCGGGGAGGGGCGGGGAGACCCCACCCCTACGAATGTATGTGTCACATTCTTTTTTAAAATGGGGTTTGAATACCTATTTAAACTGATATGAAAGGTGAAGATGAAAACAAAACCTTTTAGCGAATTGCGCCAGAGAATGACACCAGAACGCCGGGAAAAGAGCAAAACTCTTGCTAAACTCGCACTAATTCATATTAATTTGATGGAACTTCAAGAGTCGTTAGGTTTGACAGAGGATGATTTGCCAAAAGACCTTGGTATTGAATCTATTTTTGCTCAGTTAGAAAGCCAAGAAGATATTCAAG # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.94, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGTTGCCCTTACCCCGCAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 4 704018-702542 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018207.1 Calothrix brevissima NIES-22 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 704017 37 100.0 35 ..................................... GCGGTAGTGGTACTAGGTTTATCTGGATCGTTTAG 703945 37 100.0 34 ..................................... AGAAGGTGAAAGCGACTTAGAGGAATGCTTTACC 703874 37 100.0 37 ..................................... AGCGCCGATTTAATGGATCGCCTACGTGCCTTTGAAA 703800 37 100.0 36 ..................................... CACAAGCCAAATTCGAGCTATCCGGAAAGTCAGTAA 703727 37 100.0 36 ..................................... CAAAGTCATCAACCCCATGCTTTGTGATTGTTGCGA 703654 37 100.0 34 ..................................... CCAAGCGCGGATGTTTTCACTTTGCGCCATACCA 703583 37 100.0 36 ..................................... CGATCACTCTTAGATGGCGTTGGTGGCGCATGTATG 703510 37 100.0 32 ..................................... ATTAGACCACTTCAGGAGTAAAGGAAATGCGG 703441 37 100.0 35 ..................................... CCATATTTATTGCCCATGTAAATACCCTCATTTTA 703369 37 100.0 34 ..................................... CTGTAGGAACTGAGTTGGTGCGTTGCGCTGTGCC 703298 37 100.0 34 ..................................... GCCTGCTGAGACTGGGTTGCCCCGCAAAGGAGAG 703227 37 100.0 34 ..................................... TTACTGATTCTCTTGCTGCCATTGCTGCTAATAT 703156 37 100.0 35 ..................................... TGGCAGGAAGTAAATCCATTGATTGGCGTAGGACA 703084 37 100.0 33 ..................................... GTTGCAGTCTTCAATCGATATTGAGTCATTTGT 703014 37 100.0 36 ..................................... AGAATCAAAAGCCCCCTGCACAGTTTCCCAAACTGG 702941 37 100.0 35 ..................................... AAAACCATGCAAAAATCCAGATTACGCAATGCTAA 702869 37 100.0 33 ..................................... ACGCCAGAAGCAAGACCACAGACAGTATCAGAA 702799 37 100.0 35 ..................................... GTAGTAGAACCACGGGCACGAATATAAGCGCCAGA 702727 37 100.0 38 ..................................... AGTTGCAGTAGTAGTCTCAGCTAAACTTGGCAAAGCAA 702652 37 100.0 37 ..................................... ACTCGCAACGGTACACGCTATAGAACATACCAGGTTG 702578 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 21 37 100.0 35 GTTGAAATTTCATTTACTCCCTATTAGGGATTGAAAC # Left flank : TGAATGTTGTTATATCCTACGATATTTCCGAAGATAAGCGCCGCACAAAGATTCATAACATTCTCAAGTCTTATGGGCAATGGGTGCAGTATAGTATTTTTGAATGTCAGTTGAATGATACCCAATACGCCAAACTGCGATCGCGCTTGCATAAGTTGATTAAAACTGATACGGACAATATCCGTTTTTACTCTCTGTGTAGTTGCTGCTTTGGTAAGGTTGAACGTATTGGTGGCGAACCAGTCCCCGATGATACTATTTTCTTTGCCGAATGCGCGGATGGGTAGGTGTGGAAAATATAGTTTCACCAAAAATGAGGTGAAACTATTTCTACTTCAGGCTTTCAAGCATTCACTGTTCTCCAATCACCCGCGCGCCTTATATAGAAAGACTTTCAGTTATTTTGGTTTTGCATTTTTACTATTGCTTATGTTATTATGGCGCTATCCGCGCTCCAGAACCTTGAAAACTGCATATAGATTAACTTTCAAGCTTCCGCA # Right flank : CTTAAAACATTAACTATCAATCCGCTTGAGCGAACGCTGGCAAGTTGGCATTACTTATCTGTATTTGCCACTTAAATTGAGATATCAACAGATTTTATTATTGTCTCTTTATCACCTGAATTTTACCTCTAGCAATCCCATTATTTTTTTGTTTTTCCTGACAAGATTCTATCGTCATTGTCACATCATAACGCGCAAAAAACTGAGCGCAAAGTTTGCCTTCATGGAGATTAATCAAATTGATAATTTCATCAGGAGACTTGCTTAAAAAGTTGTAAACATTTAATTGACAATAGTGACATTTTCTCACATCACTATTACCTTCCATATCTGCCCACCGAACCTGACATGGCTCCTGAATAATAATTTCTACATCATCAAGCGAACTAACTGCCTTAAATCTCCTTTCTTTCTTTGACATATTTAAATTTGCCTCTAGGGTCTTATTGTGGGTAACAGCAAATTACAGTAATGGTAGTTCTCAACTAAGCGATAGCGCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCATTTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 5 1539551-1542777 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018207.1 Calothrix brevissima NIES-22 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 1539551 37 100.0 35 ..................................... TCGCCAATCTCACCCGATAACCTACTAATTGATTG 1539623 37 100.0 34 ..................................... ATTTAACAGAACTGCCATTAAAATACTGGGTTTC 1539694 37 100.0 36 ..................................... AGGCAAAGCTTTTCCCCAAACGGATTTATCATTTTT 1539767 37 100.0 42 ..................................... ATTACCAAGTGAGATAAGAAAGCGTGCATGAAATGTTTTAAT 1539846 37 100.0 34 ..................................... GAGTATCTGTAATCCAGTTCTAGCAAGGTTTAGA 1539917 37 100.0 39 ..................................... TTGGTTTTTAGGCGTGGGTGATGTGGCATCTGATGTTGG 1539993 37 100.0 36 ..................................... TTGGACAGAAGGCGATCGCTCATTTACTAGGTGGTG 1540066 37 100.0 36 ..................................... CGCCAAGGCTTTACGCGCTAGCCCACGGCGCTCAAC 1540139 37 100.0 33 ..................................... AGAAGAATTCATCATTATGCCAGTGTATGAAAG 1540209 37 100.0 37 ..................................... TGAGAATGCTGCTATTGCTGTTTGGCAATACACGGGA 1540283 37 100.0 36 ..................................... ATTATCGAAGCACAAATAAAAAGTTCTACCCAGTTT 1540356 37 100.0 36 ..................................... ATGAAGACCTTTTGTAAAATGTCCTCATATATATTG 1540429 37 100.0 37 ..................................... TCACCATTGCTTAGCGATTTCCTCGTGGAATACTTAC 1540503 37 100.0 34 ..................................... CATTGAGACGTAGAAAACTCCTGAACCCCCACAA 1540574 37 100.0 38 ..................................... AATTTAAAACTCTACTCAAAGTGTTGCAAATTAGTGCA 1540649 37 100.0 35 ..................................... TATCTTTTAACGGACTATCCGATTGACCTACCAAT 1540721 37 100.0 35 ..................................... GAGAGAACGGCAATGATTAAATGGAAATTGAATGA 1540793 37 100.0 37 ..................................... CAATTGGGATTAGGAAATGTCGAGAGATTGGGTCTAT 1540867 37 100.0 33 ..................................... AATAATTCCGCGCTCAGTACGATAAACACGGTT 1540937 37 100.0 34 ..................................... CATGAATAGTACGGATACACCCCCGCAATGATTC 1541008 37 100.0 35 ..................................... AATGAATCCTCATGAATTCCTTGAAGACTTGATTT 1541080 37 100.0 32 ..................................... AGAGATCAGCTAGTAGCCCAACAGGCGATCGC 1541149 37 100.0 36 ..................................... GTATTCATCAAGCACCTCATCCATCCAAGTGCAAAT 1541222 37 100.0 33 ..................................... AGGTGCAATTTCTAGTAATAGTTGGCGATATGC 1541292 37 100.0 36 ..................................... CTGATGATGCGAGTGAATCTCCTTGTAAGGTTCGAT 1541365 37 100.0 36 ..................................... ATGTATAACCATGTCTGTATTTAAATAAACAACAAA 1541438 37 100.0 37 ..................................... AAGCATCCAAACGGCTTGATGGGGGCGGTACTTTCAG 1541512 37 100.0 35 ..................................... CCAATCAATGTACAAACTCTTGAAATTGATTGGAA 1541584 37 100.0 34 ..................................... ATTCTGATGCAATCAGTGAGATTTACTAATGCGA 1541655 37 100.0 32 ..................................... AAAATATGAGCGCTTCTAGCACAATTTCAAAT 1541724 37 100.0 41 ..................................... GCGATCGCACTCCAAGCCCAAAGCGATCGCACCCACTGGGA 1541802 37 100.0 33 ..................................... GCCAGATAAATTATGCCTACTTCTTTATATGAA 1541872 37 100.0 34 ..................................... GGCGAATCTGCTACTACATTACTTTGAGTCGGTA 1541943 37 100.0 38 ..................................... TCTGCCAAATTGCCCCAAACGCACCAAAACAAAGCAGC 1542018 37 100.0 33 ..................................... ATCCATTGGTAGTCTGTCGTAGGGCGTTCTAAA 1542088 37 100.0 31 ..................................... GTATTTCTTGCTGAAATCACCTTGCTTTTAA 1542156 37 100.0 38 ..................................... CACGAGTTGCAGAAAGTAAAAGCCTTATCCCTGATGTG 1542231 37 100.0 32 ..................................... TGCGTAGCGCTGCTTCTAATTCACGGACTGCG 1542300 37 100.0 35 ..................................... CAGCACCTTCCCCAATGGGGCAAACGATGATATGT 1542372 37 100.0 38 ..................................... AGCGAAATTAAATTCTTTGCCCAAGCCCAAAAATCAGA 1542447 37 100.0 40 ..................................... AAAAGTAACGCTTCCACCACCTTGGGTTCTGCTGCGGGAA 1542524 37 100.0 34 ..................................... TAAGTTAGGTTGCCAGGGGAACCGGTTTTAGTTG 1542595 37 100.0 37 ..................................... TCACTCTCATTATCAATAACCGCTTCTTGCAGTATGA 1542669 37 97.3 35 ................................C.... GATGAGAGTAGCGCCGGACTTGAGAGTGTACTTCT 1542741 37 97.3 0 ................A.................... | ========== ====== ====== ====== ===================================== ========================================== ================== 45 37 99.9 36 GTTGAAATTTCACTTACTCCCTATTAGGGATTGAAAC # Left flank : CTAGTTAATTGCGATAGTCTCACGCAAAGACGCTCTTGAGTTTGCGTCTTTGCGTTCTTTACATGAACAGGATAGTTCTTGGGATGAGATCAAATGAGTCGCCGATGGGTCAAACCTTGATCGCCAAAGACCGCAAACGGTATAATGCGGAGTGCGTCGGTATTATCATGCCCTCTAGAATATAGTGATGTGCCGCAAACACTGTTTAAAATAAAGTCAAGCCTACAGAAGTACAGTTAAACCTTGCCCAATCCGACAATTTTTTGGACAGAATGCGCGAAGGGGTAGGTGTAAAATTTGAAGTTACCAGGAAAATCGCTGAAACTCTTTCTCTGTAGGTCTTTTAACTGCTAATTGTTTCCTATGCACCCGCGTGCCTTATACAGACTGGCTTTCAGCTTTTTTAGCTTTGCTTTTTTTCTATCGCGTATGTTATGATTACTCCATCCGCGCAACCGAACCTTGAAAACTGCATATCAGTTAACTTTGCAGCTTCCGCA # Right flank : CACTTAGGAGTGGCACAGTAAATAAAAATTCAGCTTGTCAACAGTTAATAACCAAAGTTAAATACTATGGACTATTGACTATGGACTGTTGACTAAAATTTATGACCAATGAAATCTTTCATCGACTTGCGCCTTTTATCCAAGAATATATCTATAATCACAACTGGACTGAATTACGCCCAGCACAAATAGCCGCATGTCAAGTCATATTTGATACCGATGCTCATTTACTAGTTGCAGCCGCAACAGCAGCAGGAAAAACAGAAGCCGCATTTTTACCTGTGGTGACTCGATTGTATGAAAACCCTGCAAATACCATAGGTGCGCTATATATCGGCCCCATCAAAGCTTTAATTAACGATCAATTTGAACGCCTCAATGGTTTACTCAAAGCCGCAGATATTCCAGTATGGCATTGGCACGGTGATGTATCTCAAAATCAGAAAAATAAGCTATTAAAAAACCCCAAAGGCGTATTGCAAATTACGCCAGAATCTTTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCACTTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 6 2277342-2279272 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018207.1 Calothrix brevissima NIES-22 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 2277342 37 100.0 37 ..................................... TAGGGCTGAGATTTCCTAAATCAAGCTAGGCTTGGGC 2277416 37 100.0 33 ..................................... CCAGCTGTGCCAAAACCTACTTGTAAAGGTGGC 2277486 37 100.0 36 ..................................... TCACCTATTTCTGACGTATGAGCATAAATTTGTAAA 2277559 37 100.0 34 ..................................... CGTTTTTGCGATCGCCATAACTATCGAGTGAGCA 2277630 37 100.0 41 ..................................... GTCGTCCCACGTTACGCTGATAGTGCCGCCTAATACTTCAA 2277708 37 100.0 35 ..................................... TGGTGTGTACATATTACTTACCCCCTGTGTACTTG 2277780 37 100.0 34 ..................................... TTCCAGCGCTGTGGTTAATTCCTGCTTGATTTCC 2277851 37 100.0 36 ..................................... CTTGTGGCATTTCTGATGGCAGTAGATTTTCATCAT 2277924 37 100.0 35 ..................................... AGCGTCTTCCTCTATCTTTTTAGCTTCATTTCTTA 2277996 37 100.0 38 ..................................... GGGAATAAGATTAACACTTAAGCAGAGCGAAAAGCCTT 2278071 37 100.0 34 ..................................... GCAGCAAATTTTGGATGAAGGTGAGGCGAATGGG 2278142 37 100.0 37 ..................................... TCGTCGGACTCTCAATCAACCTTGGCGACATTTAATC 2278216 37 100.0 34 ..................................... CATATACTGATAGCTATTGGCAGCATGAAGATGC 2278287 37 100.0 40 ..................................... AAACAGAAAACCCGATGCATCGCAATGCACCGGGTTCAAA 2278364 37 100.0 38 ..................................... TCCAGGTGTAAGCTCCATAAGCTATTAATTCATCTAAA 2278439 37 100.0 35 ..................................... CATAGTCCCTTTCTCAATGGACAAATGATATGCAA 2278511 37 100.0 42 ..................................... ATAGACTGCCTCGCACTCTTCTTTTGTGCCGACGCAGATATG 2278590 37 100.0 35 ..................................... GGGTATTATTTTTACTTATCAATAAGGCAAATCAG 2278662 37 100.0 34 ..................................... TGACCAGAAGTATTAGAAACAATACTACCCCCAG 2278733 37 100.0 35 ..................................... TGAAAAACAAATAGATTCAGCTATTAAAGTTTTGG 2278805 37 100.0 37 ..................................... GTGGGTGTGGGTTGCTCCCATGCAGGATTGCGATCGG 2278879 37 100.0 35 ..................................... ATTGAGTACACTAGCGTGTCCGGGTTTAGCCCATA 2278951 37 100.0 34 ..................................... GTTGGCTATCTAAGTATTTAGCAGCTTCTACTGT 2279022 37 100.0 34 ..................................... ATCTTCCCGGCTTTTGACTTAGTTTTACCGTTCG 2279093 37 100.0 34 ..................................... TGCTGAGTGGTGAAAGTTCCCGCCGGAGATGATG 2279164 37 100.0 35 ..................................... TTAGCTTCGATTAGTTCTTGTTCGCGCACTTTTAG 2279236 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 27 37 100.0 36 ATTGCAATTTCTCTTAATCCCTATGAGGGATTGAAAC # Left flank : AATCCCAGTTTACAAAGAAGGCGTAAAACATAGCTTTAGTGGTAAACGCATTAAAAGGGCTTGGTATAAATCGAAGAATGGAAAGCTTATTCATGCAGATATCAATGCAAGTCTAAATATAACAAGAAAGGTAGTCCCTGCGGCTTTTAGCTTAGGGATAGTGGGTATTGCAGTTTGCCCTTCTCGGATTACTCCGGGTCAAGTAGTTTAGGATATTTGTCCATAAAACTATTAACTGTCCTCTGCTGTGAAAAAATTATTTTTGGCAGAATTTGCGCGGCTGGGTAGGTGTTAAAAAAGGAGTTTTCTCAAAAATGCCTGGAACTCCTTTAGTATAAGGTTTTTAAATGTTAATCCCTATTCAAGCACTCGCGCACCTTACACAGCCTAGTTTTCAGCGATTTCAGTTTTGCTTTTTCACTCTAGCTTGTGCTATTATTTTCTTATTCGCGCACCAGAACCTTGAAAACCTTATATCACTTGGCTTTGAAACTGTTGCT # Right flank : CTTAAAAACTCATTATCAGAATTCAGTTCTCAAACAGGGGTTTGAGTTCTCAAACTGAAAATTGAGTTCTCAAACTGGGGTTTAAGAACTCATTTCAGTATATTCAGCAGGCAAAAGTTAATATTGCCTTCTCAAACTGGGATTTGAGAACTCATTTGAGTATATTCCGCAGGCAAAAGTTAATATTGCCTTCTCAAACTGGGGTTTGAGAACTCATTTGAGTATATTCCGCAGGCAAAAGTTAATATTGCTTTCTCAAACTGGGGTTTGAGAACTCATTTGAGTATATTCCGCAGGCAATCGTCAATTGTCAACCGTCAACAGTCAACCATCAACCATCAACCGTCAATCTCCCATCCAAAAACTTGAGTTGCTGATATAAACAGTTAATCTGCGGTAAATATACACCCGCAGCTTGGGCTTTGCGTAATGGAGTACCAAAAATTGCTTCTACTTCTAAAGGACGCCCTTCATCAGCGTCAATTTTCATGCTGGTACGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCTCTTAATCCCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 7 2695062-2695778 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018207.1 Calothrix brevissima NIES-22 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ===================================================================================================================================================== ================== 2695062 34 91.2 149 T....................A..T......... CACTTGAAGTAGCAAAGTCTACATTTGATTGTTTGCATAAATATTTGCGTTGTGGAGTATGAGTGTGAAAAGCTCACGCAAAGGCGCAAAGGCGCAAAGAAAATCGAGAAAATAAATACTTTTGCAAAAGATGTGCTGTTAGTTTGCTT 2695245 34 97.1 38 A................................. CCATGTATATCGTAAGGATGTGATCCGATGCGCAGAAT 2695317 34 100.0 37 .................................. CATGCTTTGGGCAGTAGTTATTGCAGCGACCACCGTT 2695388 34 100.0 37 .................................. CCTTGCTATAGATTGTCCTCTCATCGATGAACAATTT 2695459 34 100.0 39 .................................. CTCAGGGGAATAGCGCTGATTTCAGGTACAGTTGGCTTT 2695532 34 100.0 38 .................................. CCAAAAAAAAATCCAGCATTTTTTCCTCCAACGCGAAA 2695604 34 100.0 35 .................................. CATGCTCTGCTAGCTGTGATGGAAGTTCAGATTAG 2695673 34 100.0 38 .................................. CAATTCTTGGAGGAGAACATAAAAATAAGGTTGTTCCT 2695745 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ===================================================================================================================================================== ================== 9 34 98.7 52 GTTTCCATCCCCGTGAGGGGTGATGAATTGAAAA # Left flank : GCAATATGTAGAGGTAAAAATAGGCGATCGCTCTATAATATTTTGCAACGGACATTATTATTGGCAACCTGGTTCTACACCAGAACGGATGAAGCAGATACAGTTATTAGTCGATTGGCTGGGTAAGCTACCACCAGAAATCCCCATTATCGCCGTCGGAGATTTTAACGCCACTCCCGACACCCCCGAAATTGCATTCATCTGCGAAAAATTTACTTCAGCTTACGCTAGTTATCATGGCGAAGAACCAGAATATACTTGTCCTACGCCTTTGGTGAAACCTAACCGCAGCTTGTGGCGTAAAATTGCACTGAGGGTACTAAATTTGTATGTCAATCGCACCTGGAAACCTTGGCGCGGTACTCTGGATTACATATTTATTAGCAATAATTTGACTGTGCGCGACTGTCAATTGATTCTCACTGAACCTGCGCCGGAGAATCCTAATATTTATCCTTCAGATCATTTTGGTATTGCGGCTGATTTAGGTTAATGTTTCG # Right flank : ACCCTACCCTTCTAGAACGGTTGCTATGACTGGGGTTGAAGGTAGCATTTTCGGGGGTAGCCTAATTTTGCAGTCAATAAGTATATTTTATTGACATTAAAACATATATACAGACACCTCAAAGCCTTATGTAGTAAGTCATTCGGGGCTGTCAACGAAAGAATCAGGGTTTGAGCGATTGCTCTACACCCGCGAAAAATTTACGTGTGTTTAGTCAAAACAAATACTTGTGTTTTCACTGGGAAACGTTAAATTCAGTTTTCAAGGTTCTGTAAATTTATCAAAGAGTATAACAAATTACTCGAAAATTTTTACTCTATATATTGCGAATGTAACATATCTAAAACTGAGCCTGGATTTTTCACAAAAATTTTTCAGCTTCAGCTTTCTGGGGTAACAGATCCCCGACTTCTCAAAGAAGTCGGGGATCTAAACACCACCAACTGCTCACAAATAAATTCTTGCATCACGGCTTAACCTGTGAGTATTCTTAAACTACG # Questionable array : NO Score: 7.76 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:-1.43, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCGTGAGGGGTGATGAATTGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.50,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : NA // Array 8 4107403-4108318 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018207.1 Calothrix brevissima NIES-22 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 4107403 37 100.0 33 ..................................... TACCATTATTTGACATCTTAGCCAGTACCCTGA 4107473 37 100.0 38 ..................................... ATTGCGTTAATTGCATCAATTCGACCCCGTTCTTGAAC 4107548 37 100.0 38 ..................................... TGGCTGGCATTGACATGCAGTACTCAGCAGTCAACGGG 4107623 37 100.0 37 ..................................... AGTAAGCCTAATGGAGACAACACAGAAACGATGATAG 4107697 37 100.0 32 ..................................... GTTAGCCCCAGCTAGGGATATGTGACCACCAG 4107766 37 100.0 34 ..................................... TCGATAACTCGTTTGATGTAAACTGGACTGCCTA 4107837 37 100.0 35 ..................................... TTTTCGGTAGGATTGCTATCAATTTCCCAGTCTGG 4107909 37 100.0 39 ..................................... AGTTAATAGTATTCCTGGGAGTAAGAAAAATGTCAGTTA 4107985 37 100.0 39 ..................................... CTGACTAGCTAATTCTCTAATATTCATGGGATTGTCCTC 4108061 37 100.0 36 ..................................... GGTAAATCACAAACATCAATTTATGGTAAATATTGG 4108134 37 100.0 37 ..................................... ATTCCCAGGCACAACCGCAAACATAATTCCTCATGCA 4108208 37 100.0 37 ..................................... TAAGAACTGCTTTCCGCCCAAGGAGATGAATTCTCCT 4108282 37 91.9 0 .......A........................A...A | ========== ====== ====== ====== ===================================== ======================================= ================== 13 37 99.4 36 GTTTCAACAACCTATTACCCCGCAAGGGGATTGAAAC # Left flank : AAAAGCTGATGGAAAACGGAATTGATTTACCCTTCCCCACCCAGCAAATTCTCTTTCACGATCAGACAGAAGAAACAGATGGCGATCGTTTTCGTCAACGCGAAGGCTGGCCTGCTGTTAAAGGTAAAGTCCCAAAACCTCGCCGCATCAGCGATTCGCTCAGGTTACTTGCTCAATCTCACACCTCATCAGATGGTAATCACAAAGTAGATTCTCACAGCAATGAATCTTAAACAACTACCAAGGAATCTCTCGCCAAGAGTTGAGTATAATTTGATTATTCATGTATTAGCTTGACATTTGGCATATCCAAGCGGGGGTAAAAACCTGGGGGGTTCTGCCAAAAACGCCAGAACCTTGACAAATCAATAATTACAGAGTTTCGAGTCTTAGGGAAGTTGCAAATTAATTGCAATAAGCTAGGCTGAAAATGACCATTTTTTTCGATCTGCCAAAATCCTTCCCAGAAAGCCTACGGTGTATTAGTTTCAGCACTCAGG # Right flank : AAAATAGGAGTGCTGAATTAGGGGATGAATTTTGATTTATTGAAATTTTCCACGCCCCATACCAAACTGCAATCTAAAACCTAACATTAAAATCCATACAAGGGCGGGGAAACCCCACCCCTACCAAAATCTTAATTACATATCAAAACGCGGATTGATATTATTCTCTCTGCGCCTCTGCGCCTCTGCGTGAGATAAATCATCCCGCATTTATGCAACGCCAAGAAATATATGATTTTCAAAAAAAAGCGATCGCCTAACGAATTACTCAATAGACTTCTTGCAAAAGTTCTTATTCTTAGCTTCTTCTTTGCGTCTTTGCGCCTTTGCGTGAGACAAAAAAATATTTATGCAAGATGTCTAATGACAAATGACAAAATTACTCCTCAGCCAACTGACTGACAATTCTGGCAAATTCATTTGTCATCCAATCATCACCAGTTTCACGATAAACTTCCAGCAACGACTTATAAAACCATAAAGTCTTTTCTCTACCAATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACAACCTATTACCCCGCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 9 4480556-4478442 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018207.1 Calothrix brevissima NIES-22 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 4480555 37 100.0 36 ..................................... ATTTTCGCTTGATACTTCCGTATCTGCTTTGTTGCA 4480482 37 100.0 37 ..................................... CCAATGCACGGCTTACGGCTGCATCAGTAAACCCTAC 4480408 37 100.0 37 ..................................... CGCTCTCGGATATCTTAATAGGATAAATGTTGTTGTT 4480334 37 100.0 34 ..................................... GGCGAACTGGGGTGAACTTGACTAACTTTTTCCT 4480263 37 100.0 36 ..................................... CAAAATACACCATTTACCATAATTTCCACTTAAGAG 4480190 37 100.0 34 ..................................... ACTATGAATAATACCACCAAACTAGCGCTATCTT 4480119 37 100.0 33 ..................................... AAATGTTAAATCAAGCCCCTCACTATCACGAAG 4480049 37 100.0 34 ..................................... GTCGTGGTTTCCGGCTGAAACCCGCTATTTTGCG 4479978 37 100.0 35 ..................................... AGAAGGTGAAAGCGACTTAGAGGAATGCTTTACCA 4479906 37 100.0 35 ..................................... CGCACTTTTCGACTTTGCTTGTAGTTGGGCATCCC 4479834 37 100.0 36 ..................................... AATGGTAATTGGCTGACGGGGCTGATGATACTTTGC 4479761 37 100.0 36 ..................................... GATTCTAATAAACGTCAATACTCAAAAATATCTTTT 4479688 37 100.0 36 ..................................... ATAGGCTTGCGCTGCCATCGTCTTACCCTCCCACGT 4479615 37 100.0 34 ..................................... GTATGCCTAAAAATAACAGATCCGGTAAAGCGGC 4479544 37 100.0 34 ..................................... GCCCAAACTATTAAGAACACCAACACTCACCCCT 4479473 37 100.0 37 ..................................... ATTGATTCTTCCGATGGGTTGCGCGATCGCGTTTTGG 4479399 37 100.0 32 ..................................... GTGCGGCATTTGCTCCAGCGTTTAACCCTTGT 4479330 37 100.0 33 ..................................... CAACAAAAACAACAAGAACAAATCAAACAGATT 4479260 37 100.0 33 ..................................... TATTTACTTCACGCACAACATTGAGGTTGCGAT 4479190 37 100.0 34 ..................................... AAGAATTATTTGGTCAGGCTGGTCACTCCACTTG 4479119 37 100.0 35 ..................................... CAAGTCTCGTTGTTAACGTAAATTTACACAAAGGC 4479047 37 100.0 35 ..................................... CACGTAAATTTACACAAAGGCGATCGCGCCCTATT 4478975 37 100.0 34 ..................................... GTATACCTATTTCCCACATTTGAGGAACAGTCAA 4478904 37 100.0 36 ..................................... CTATTCCGCTTCCAAACCCAAACCCAAACCCAAGCC 4478831 37 100.0 33 ..................................... AAAATCCGCCGCCTGATTCAAACCAACGCATAT 4478761 37 100.0 32 ..................................... TTGGAGTGAGGAAAGCAATTATAAATCTTATG 4478692 37 100.0 39 ..................................... CTGAATCTGCGCTTCTACTGCATCCCAGACGCTATCAGG 4478616 37 100.0 32 ..................................... CGCTATCTCAAGGAATCCCTGGATAAACCAGA 4478547 37 100.0 33 ..................................... CCAATTTTTCCAAGACGAAACACCCCCAATGAC 4478477 36 78.4 0 ........................-...AC..ACGCA | ========== ====== ====== ====== ===================================== ======================================= ================== 30 37 99.3 35 CTTGAAATTTCACCTAATCCCTATTAGGGATTGAAAC # Left flank : AGATTAGATGCTGTAATTGACTGAGCAGTAAAGCATTTAATTATTCTCTAATGATATTAAAATTACCGTAATTTCAATAACTTTAGAATTAGCCTACTGATTAGCCACAAACGTTAAAGCTGTGGCTTTTGGGGCTTAAGCGGAAGCTTCTACTGCTTTGACGCAAGTTGGTATGTTAGAATAATTACCAAGTCAATCATTATTTATTAGAATTCCTCTTGCCCATTCCGAGTTGAGATTAACCTTATCCAATTCAACGGTTTTCTGGGAAGAATGCGCGGATGGGTAGGTGTGGAAAATGTGGACTCCAGATAAATGGCTGAAACTCTTTGTCTGTAATACTTTCCAATATTTTTAATTTTAAATCGCCCGCGCTCTTTATGCAGCAATACTTTCAGCGATTTTGCCTTTGCTTTTTTACTATTGCTCATGCTAGAATTAAACCGTCCGCGCAACAGAACCTTGAAAACCTCATATTCATTAGCTTTCAGGCTTCCGCA # Right flank : CAGTCTACGAACTCTTGGCGTTCTTGGCGTCTTGGCGGTTCCATAAATTAAGGATTTGAGAAATTTTTGCGTAAGTTCTGCCCCAACAAATCCCTGGAAATGTTGGGTTTCGTTCCTCAACCCAACCTACATCCGACTCTTGGCGTTCTTGGCGTCTTGGCGGTTCCATAAATTAAGGATTTGAGAAATTTTTGCGTAAGTTCTGCCCCAACAAACCCCTGGAAATGTTGGGTTTCGTTCCTCAACCCAACCTACGCAGCTTAATGTTTTTCGCGCTAACTTAACTGTATTGACCTATTTAGGGATTGAAACTTTAAGACTCAAGACTAACAGGAAAAGTCACTGTAAAAGTAGTACCTTTACCAAGGCTGCTTTCTACTTGTATTTGACCTTGGTGATGTTCGACAATAGCTTGAGCGATCGCTAATCCTAATCCTGAACCTGTAGAAATATCACAAGCTGTATTTTCGGTGATGTGGGTACGTGCTGGATCTACGCGA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAAATTTCACCTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 10 4893884-4890574 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018207.1 Calothrix brevissima NIES-22 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 4893883 37 100.0 35 ..................................... TTATTCATCCTAAAAAAGGAGCGTAATAAAGCTGG 4893811 37 100.0 35 ..................................... AACGGGCGATGCGTTCAGGTACATTTGATAATTTT 4893739 37 100.0 35 ..................................... AAATAAATCTAAAAAATCAAAGCTAAAAGGCTGAG 4893667 37 100.0 34 ..................................... GCAGTAGTCAGACAATGAAATCTGGCCGTCTAAC 4893596 37 100.0 34 ..................................... CAAGGATAAAAGCCTGAGCATCTGAGAGAAAAAC 4893525 37 100.0 34 ..................................... GTAGGGAGTGCGGAATGCGTCAACGCTGCTACTC 4893454 37 100.0 33 ..................................... TATGGTCGTACAGTCAAGAAATTTGCGAAAAGG 4893384 37 100.0 38 ..................................... CATTGCCGTTACAATTTCCCCATAAATCGTACCTGTTC 4893309 37 100.0 34 ..................................... CTTAATGGAGGTAAATAACCCCTTGACTCTCGTG 4893238 37 100.0 35 ..................................... TTGCTAGCTCCCATAAGGAATCAAGCTTAAGGTCA 4893166 37 100.0 37 ..................................... TCTCTGTACCCGACTATGGTGTCTGGGGATAGATTCC 4893092 37 100.0 37 ..................................... CACACTTCAACTTGAGTGTGAGCGGGAACTAGTTTAA 4893018 37 100.0 37 ..................................... CTAACTTCCGCGTGACCAACCCAACGAACTTCTATGT 4892944 37 100.0 33 ..................................... CCGCAACTGGCTTGGCATTCTTCCAAGGATTGG 4892874 37 100.0 36 ..................................... CCAGAGGCGATCGCACTTTGAAATGCAAGCTGTACT 4892801 37 100.0 40 ..................................... TAATCTCCCCCGGCGATTTACCAGATGCGATCGCACTTTC 4892724 37 100.0 37 ..................................... AACTAGAGGCATCAAAATGAGATATATGCGACTACAA 4892650 37 100.0 36 ..................................... AATTGCTGCAAGTACGAAGTAAATGTCTCTCCACTG 4892577 37 100.0 35 ..................................... AATTACCCGGACGGGTACTTTGTCGGATCAAGCAA 4892505 37 100.0 37 ..................................... AGGCAGTGCCAAGACGCTTCTATCCCTGTGTTTGTCA 4892431 37 100.0 32 ..................................... CTTCAGTTTTAGAAGCGCATAACAAGCGTAAA 4892362 37 100.0 34 ..................................... ACCCTATTAAATTTTGGCTGTGGATTCATCCAAG 4892291 37 100.0 42 ..................................... TTGAATTTCGCCGGGTGTTTGCCCATCCGCGATCGCACTTTC 4892212 37 100.0 35 ..................................... GACTCTTACAGAAGTACCTCGCTGCCCTTTATATA 4892140 37 100.0 37 ..................................... AGCTGCAATAGTAAATTTTCCTGATAATGTTGCACTA 4892066 37 100.0 40 ..................................... GGCTTAATTGTTGCTGAAGGATGCTAATTTCATCCTCATA 4891989 37 100.0 36 ..................................... AAATCAGGGTTGATGTTTGCCAGAGTCAACCCTGCC 4891916 37 100.0 40 ..................................... TTGATTTAACTAGGATAAAAGCACGGGCTTATACTTGGGG 4891839 37 100.0 34 ..................................... TGGTTGGGCATAAGGAATTACGATCATATCGCGC 4891768 37 100.0 34 ..................................... GGAATTTCATCGCGCCAGTAACGCTTGACATTTT 4891697 37 100.0 34 ..................................... ATCGGCTTAAGGCCGACTCAATGGCATCAGTCAA 4891626 37 100.0 40 ..................................... TAACTATTCTCTACTTAATCTCTACTTCTCTAGGCTTAGA 4891549 37 100.0 37 ..................................... ATAAGTCACATAAACCTGCTAAAGACGAGATACTTAG 4891475 37 100.0 38 ..................................... TTCTTTGTAAAAAACTTGTGTGTCGCCATCGCACCAGG 4891400 37 100.0 33 ..................................... CCAATCTAAACTTGACGCTAGGCAAAGACTGTC 4891330 37 100.0 38 ..................................... TATAATTCGCAAATTTATAAGATTCTAATGTGTCATCA 4891255 37 100.0 32 ..................................... ATTTCATTTCTTAGTTTCCTTATTATTTATTT 4891186 37 100.0 36 ..................................... TTTGAAAAGAAGTAGGAACAACCCCCCAAACAATCA 4891113 37 100.0 34 ..................................... CTTTGGATTTTGAGGAATCTTAACTACGCCCTTG 4891042 37 100.0 34 ..................................... TAAAACCTTTATCAATCAACTCCTGATCAGTCAT 4890971 37 100.0 36 ..................................... GGAGATTACCTGTCAATCAGTAATGCTTTGTTTTCT 4890898 37 100.0 34 ..................................... ATTTACGAGAATACTGGCGAACAAAACGATATAC 4890827 37 100.0 32 ..................................... ATCTTTCCTCCTATATTAGCGTTGCCTCCAAC 4890758 37 100.0 41 ..................................... GTAAGCCAAGACCGACTTGGGGTGGCGATCGCAAGCCTAGA 4890680 37 91.9 33 ............AA..A.................... AGATTTTGCCAAGTCCCAGCAACATCAAAAACT 4890610 37 83.8 0 ..G.........AC..A.T.........C........ | ========== ====== ====== ====== ===================================== ========================================== ================== 46 37 99.5 36 GTTGAAATTTCATTTACTCCCTATTAGGGATTGAAAC # Left flank : CTGTGAGTAAAGCCCAATCGGAAGTCATGCCCCAGGAGTTTGCTAAATTGACAGTACCAGTACTGTTAGTTGCGGGGGAGTATGACAAGATTATTCCGGCTGCAATGGGACGACAAGCTGCGGCGATGAGTGATAATGTTGAGTTTGCGATGATTCCCGATACAGCGCATTTTCCGATGTTAGAAGATGCTTCTACTTACCTGCGAATTGTAGGGGATTTTTTGCAAATTCCCGTAGCAGTTAATTAAGGAAATGACGATTTTCTCTGTAGAATGCGCGGATGGGTAGGTGTGGAAAATAGGATTTTGGTACACATAGCTGAAACTCCTTATCTGTAAGACTTTCACAGATTAATTACTTATCTATCGCCCGCGCACCTTACACAGAAAGGCTTTCAGCGATTTTGGGTTTGCTTGTTCTCTATTGCTTGTGTTATGATTTACTCATCCGCGCACCAGAACCTTGAAAACCTCATATTGCTTAACTTTCAGGCTTCCGCC # Right flank : CAAGGTTAGAAAATCAAAATTGTTGTTTTCGGGAGCATCCCAAATGTGGAAAAACGCCCTCACCCTATAAGGGTGGGGCTAGAAATACGAAGCCTGCCTTCGCAGGCTATCAAATTTTTAGCCTGCGAAGGCAGGCTTTGTTGGTATAGCAATACCCTAGAAGGGTATTGCGTCAAAATTGGGATGCTCCCTTGTTTTCTGCATAATAAGGGCTGAATCCCTTACTACAAAAAAAGAATCTTTTGTGACACTTACGTAATTTTTATTTATTAATTTCTCAATCCTTTCTCTTTTAAAACATCATCTAACCAAGCTAAATTTTCTGGTGAAATCCCAGGTGCAGGTTCTTGACTATAATCAATCACTAAATCATAATTACCTTCGTCGTAGAGTTCACTAATTAAGGTTTGAATATCTACTAAAGGTTCTGTATCACCTTCACGTAAAGGTAACAGAAAAGAAGGTATAGGATCTGGTAAATTAAATGGATATAAATCGGC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCATTTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 11 7782063-7782242 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018207.1 Calothrix brevissima NIES-22 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 7782063 36 100.0 36 .................................... CACAAATATACTAACATTGATAGCCCAAGATATGCC 7782135 36 97.2 36 ......A............................. CTAGCGAGTGCCAGATTTTAGAGTGACTATTCCAGT 7782207 36 94.4 0 ...........T....................T... | ========== ====== ====== ====== ==================================== ==================================== ================== 3 36 97.2 36 GTTTCCGCAACCAATTACCCCGCAAGGGGATTGAAA # Left flank : CGCCCATATCTGCAATTGCTTTAGTTTCTGATACAAGCAAGCAAGAGCTAAAAAATAAAACGGCTGTCATCAGTGTCTTTTTTGTAGCTATCATCACAATTATGCCTATTATTTGATTGTGGGAAAGATACGTAGTAGCGTAGCACGCCACTACAATTATGTTAACCGTCAAGTTTACTTTTAAGTTACGTTAGGCTTTGGATAAATTCGTCTAATAAATTGAAAGCGATCGCTACAGCCATGAAATTTTCGGCGTTGCTGATTGATGGGATGATTTTTATCTCACGCAAAGGCGCAAAGGCGCAAAGAATCGACTTTCAGCTTTGTCTAGAAGTCTAAATTCATCCCGCAAATATGCAACGCCAAATTTTCTAGTTGTTCTATGCTTTGATTCTCCAGATTGGCTTGTATTGACTGGGGAATTTCGCCAAACCGCAGCCGTAATATTTGGATCAATTGAAACGCGATCGCTTTATTCTTCCACACACGGTATCTGGGAT # Right flank : ATTCTTTTTATACGCCAGCACTGCACGAAATCGAGCAAGTTTCCACAACCAAAAATAAACTGAAAAAAGAGCGATCGCAATCACGATAAATATTGTTTTTCTTAAAACTTCTGAATCTCCGTGTCCTCTGCGCCTCTGTGGTTCAATTAAATAGTTTTAAACCGCAGAGTACGCAGAGAGCGCGGAGAGGCTATTTTATAACTGCTGCGTGTTGTGACAAAGCATGTAAATCTATGTTTAGTAATATTACTGAAAATATCAAGGCTTTATTTAAGAGTTACATCAGAAAAATTGGGTAGTAACTGGGTAGTAATTGGGTAGTTTTACCCTATATAACTACCGGAGATTGATCCATAATAATTGATATAAATCATCGCTGGCAACCACATTTAAAGCTAGCATTTAGTAAATCTTGCGATAGACCAAAACCCTTAGGCAAAACTCAGGGTTTTTTAAATTTATTTATCAGTTTTAATCCGTAAACTGACTCACCACCTCTG # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:0, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGCAACCAATTACCCCGCAAGGGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : NA //