Array 1 630774-634432 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031881.1 Streptococcus thermophilus strain ST106 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 630774 36 100.0 30 .................................... TGAAAGCCATGGGTGGTTTAGCTGCTTCTG 630840 36 100.0 29 .................................... GAAAATGAAACTTCTGTCTACTTAGAGCA 630905 36 100.0 30 .................................... CCACAGAGGTAAGGAAGTTAGTGTAAAGAC 630971 36 100.0 30 .................................... TTCAAAACCTTGCAGTAGCTTGTTTCGATG 631037 36 100.0 30 .................................... GAAAGGTAGCGATGGACAGGATGGTCTTCC 631103 36 100.0 29 .................................... AAAGGTAACACTGTTCTATTCTTTAGTCA 631168 36 100.0 30 .................................... GTCAAACACAAGAGTTTTCGAAGTGGTTCT 631234 36 100.0 30 .................................... TGTTCATTCGTCGTTCCCAGTCCAGTCTTC 631300 36 100.0 30 .................................... CACCACGATTACTTATGCAATCGGAACATC 631366 36 100.0 30 .................................... TGCTCAAGACAATGGCATGTCTAGCGCTCT 631432 36 100.0 30 .................................... GTCGATTCTGGGATGTCAGATGCATGGATT 631498 36 100.0 31 .................................... CAAGACCGAAGTAACAAGAGCTCTCATTCGA 631565 36 100.0 30 .................................... AGAAACACTATGAAACTGACTTTCACTACA 631631 36 100.0 30 .................................... TTCAGCAATTACTAGGGTTAGAAATGGCGA 631697 36 100.0 30 .................................... TAGTGATGATTTACCATTCTAGATGAAGTT 631763 36 100.0 30 .................................... CCAAGCAGTAGAAGCTAAAATGCGCAAAGC 631829 36 100.0 30 .................................... AGAAACACTATGAAACTGACTTTCACTACA 631895 36 100.0 30 .................................... TTCAGCAATTACTAGGGTTAGAAATGGCGA 631961 36 100.0 30 .................................... TAGTGATGATTTACCATTCTAGATGAAGTT 632027 36 100.0 30 .................................... TCTTTACATTGTGGGAGCTATTTCATCATT 632093 36 100.0 30 .................................... TATTCTGCGCTCAAAGCCTTGTCTGATCAT 632159 36 100.0 30 .................................... GTGGCGCTACACATACACTACGCTACGCTT 632225 36 100.0 30 .................................... GCACAATATGAAATGACTACTGAATATGTC 632291 36 100.0 30 .................................... CTATAGCATAATTGTTAGTTGACCTCGATA 632357 36 100.0 30 .................................... AAACGGTTTCAAATAAATTGCAACCCGTTT 632423 36 100.0 30 .................................... CTTTTCTGAATGTCTCAGACGGTCTTAAAG 632489 36 100.0 29 .................................... TCATGTCGCTAGCTTGCATACCTTTAGGC 632554 36 100.0 30 .................................... CAATTTGCAAAAAGTTGGATTTATTGATAA 632620 36 100.0 30 .................................... TCATTTATCAAGAGAATTTCCCGCAACGTG 632686 36 100.0 30 .................................... AATGTTTACAACTTTTATCCTATTTACGAT 632752 36 100.0 29 .................................... GAAAATGAAACTTCTGTCTACTTAGAGCA 632817 36 100.0 30 .................................... ATGGTGATAGCATTGGTACTTACTACATCG 632883 36 100.0 29 .................................... TGAAACTGGATATTCAGTAGCTAAAATGG 632948 36 100.0 29 .................................... TTTGATCACGTTTATATTTCATTTTCTGG 633013 36 100.0 31 .................................... TGGGAAAGCTATCGAATACATTGCGGAAGCA 633080 36 100.0 30 .................................... TCGTCGATTATCTTCGACCACCTGTGATGC 633146 36 100.0 29 .................................... GTACATGGAGTTTCTGCTAGATACACTAC 633211 36 100.0 30 .................................... CCTTTTGGGTAAAGATAAAATCTTGATGTT 633277 36 100.0 30 .................................... CTAAAAAAATGAAGGAGTTAGAACAAGCGT 633343 36 100.0 30 .................................... AAAATGTCGGAAATAGAAAGCCATAGAGGT 633409 36 100.0 30 .................................... ATCCATCCGACTACACTTGGAGTCTGATAC 633475 36 100.0 30 .................................... TGGCTAGATATGAATTATTTAATGACCACT 633541 36 100.0 30 .................................... TGTACTCTATTGATTGCTTCATCTTTATTA 633607 36 100.0 30 .................................... GTGGAATAAGTGAATAGACTTAAACAGTTA 633673 36 100.0 30 .................................... AAAGAAATAATTACCATTCTGTTTATGTAT 633739 36 100.0 30 .................................... GATGATTTGGTAAACTACTACGAATAGACC 633805 36 100.0 30 .................................... CCAATTTGCAAAAAGTTGGATTTATTGATA 633871 36 100.0 29 .................................... CATATCTTCGTGATTAGCCCAGAACCACT 633936 36 100.0 30 .................................... TGCCTTTCTTCAAAGAAGCTATGCTTGTTA 634002 36 100.0 29 .................................... CTGCATCAAACGATGGCTTTGTCATCGGT 634067 36 100.0 30 .................................... AATATAATCGACGAGTAAGAGCGAGAGACG 634133 36 100.0 30 .................................... CATGGCCTTGTATTTTCGAAAGAGCATAAG 634199 36 100.0 30 .................................... TATCCTCTCGTTGATAATATGCTTAATTCT 634265 36 100.0 30 .................................... TTGATAGACCAAAACACTTCTGTGAGCAGC 634331 36 100.0 30 .................................... TGCCTTTCTTCAAAGAAGCTATGCTTGTTA 634397 35 94.4 0 ................................-.C. | G [634426] ========== ====== ====== ====== ==================================== =============================== ================== 56 36 99.9 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGCTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGTTGTTTCATTTTAGTTACCGTATAAGATATTCACAAACATCTGATGAAAAACTTTTACAGAAATTTTTAGAAAGTAAGGATTGACAAGAACAGTTATTGATTTTATAATCACTATGTGGGTATGAAAATCTCAAAAATCATTTGAG # Right flank : CGCCCAATAACAAGGTATATTGAAAAAGGATCCAAAGTCCTGTCGACTCTGGAACCTTTTTCTATTTACATACTCTCTTAATATTTTTGTCCCATGGCAAATAAGCCTCTAGCACCTCTTTTTTTGCGAGTGTCTCCTCGTTAGGTAAGTGTTCTAGAAGATAAGTCATATATTTCTCTGCGTCAAGTCCATGCCTCTTGGCTGTTTCTAAAAGACTCAGAATGACAGCTGTCGACTTGGCTCCCTCAAAGCTCTGAGAAAACAACCAATTTTTACGGCCCATAACCAAAGTCTTCATTGCCCTCTCAGCTATATTATTGGACAGGACTAAGTCACCATCCGAGAGAACGGTTCGGAAGGTAGTTTCGTATTTGAGGCTATACTCTATTGCAGTGCCCAATTTGGAGCCTGGCAAAACGGCCTGATTGCGACACCAGCCAAAGAATTCGTCCATCAAAGGGGCTAACTCTGTCTGGCGTTTATGTAATCGTTCCTCAGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 869580-871078 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031881.1 Streptococcus thermophilus strain ST106 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 869580 36 100.0 38 .................................... TTAGTGACCAAGGTTGGCAATACCAACATCAGTATTAA 869654 36 100.0 36 .................................... CCAATGACAGACGAGTTTATAGAATACCTTGATAAA 869726 36 100.0 38 .................................... TTTATCTGCCATCTAGCAAGCCCCTCTCTAGTTTGTAA 869800 36 100.0 36 .................................... GCATTTTTTCATCTTTGTTAGAAGCTGTTGCGATTG 869872 36 100.0 39 .................................... CAACCAGAGAGCAAAGAGAAGACTTGAGAAATGTTAGAA 869947 36 100.0 36 .................................... CTAAGAGCACTCTTTAATACTCGTAAACCAATGGCA 870019 36 100.0 37 .................................... GTAACTACGAACAAAATGACGATTCTTCAGAATCTGC 870092 36 100.0 36 .................................... ATGACGGTAAGATTGGTATTAAGCCAATCACCAAGT 870164 36 100.0 37 .................................... TCAATCTCTTCTTTACTATAATAGTAATCGATAATAG 870237 36 100.0 45 .................................... CTTATGCTATCTCTTGCCAATTGTTATTAAACCAATCTCTGACGG 870318 36 100.0 37 .................................... TGTGTTGCACGGGTACTCGCCACCTCACCAAAGGTGA 870391 36 100.0 38 .................................... CACCACATGGATAGAACATCCATTCGTCATCTACTACT 870465 36 100.0 36 .................................... AGATTGAACGCTGACAGTATAGGTCATTAGAGGATA 870537 36 100.0 37 .................................... TTTCAGTTAGCGTCAAGATGTCTCTTAGCTTTTCAAT 870610 36 100.0 36 .................................... AATCCAGCTTTACCATAAATCAGTATTCGCCAATTC 870682 36 100.0 34 .................................... TGAATGTCGTTAGTTACCACATCGAATCCAGACA 870752 36 97.2 40 ......A............................. GTGGCAGTAACTTTAACTTTAATAGAAGCACTCATGATTA 870828 36 97.2 35 ......A............................. TCTTTCTTGATAATATTCAAAGATATTGAAATTAG 870899 36 97.2 36 ......A............................. GGTCATGATATTTATTGTCTGCTGAATGATTTGATA 870971 36 97.2 36 ......A............................. GCTTTCTAGCTCGCTATAATTACCCATTCCTAGAAA 871043 36 80.6 0 ......A.......................TTTTTT | ========== ====== ====== ====== ==================================== ============================================= ================== 21 36 98.5 37 GATATAGACCTAATTACCTCGAGAGGGGACGGAAAC # Left flank : AGAGTTTGATTAGGGCTTTTAGAGAACTTGACCCTAGTCTCTATGAGACAAGTTACACAGGAGGGCATTAATGGGACTTTACTTTAACCTCAGCGAAGAAGAGCGTGAGTTTGCCAAACAAAAAACCATGTTTTGTCTGATTATTTATGATATCCGAAGTAACAAACGTAGACTTAAACTCTCGAAATTACTTGAGGGTTATGGCGTGAGGGTGCAAAAATCCTGTTTCGAGGTCGACCTGTCAAGAAATGATTATCAGTCTCTCCTTAAGGATATCGAGGGCTTCTACAAGGCTGATGAAGAAGACAGCATAATAGTGTATGTGACAACCAAAGAAGAGGTGACTAGTTTTAGCCCCTACCATAGTGCTGAAAAATTAGATGACATTCTCTTCTTCTAAGCCTTTATAGACCTTTAATCATATGGTACACTATAGATAGTGTTTCCAGTAGGTCCTACATCTTGTGCCTCTAGCAACTGCCTAGAGCACAAGATATGGG # Right flank : TGAAAATTTTGAAAACATTATTGACACCGCTTCCAGAAAGTGTTAGACTAAAAGCACATTAAGGGCGCCCCAATGAGTTGAAAAGTACTTTCAGCTTTTGGGTTTTTTTCATACAAAGATGAAGGAGTCGAATGAAAAAATTAGTATTTACTTTTAAAAGGATCGACCATCCTGCACAAGATTTGGCTGTTAAATTTCATGGCTTCTTGATGGAGCAGTTGGATAGTGACTATGTTGATTATCTGCATCAGCAGCAAACAAATCCCTATGCGACCAAGGTAATCCAAGGTAAAGAAAACACGCAGTGGGTTGTACATCTGCTCACAGATGACCTCGAGGATAAGGTTTTTATGACCTTATTACAGATTAAAGAGGTGTCCTTAAACGATCTGCCTAAACTCAGTGTCGAAAAAGTTGAGATTCAGGAGTTGGGGACAGATAAACTGTTAGAGATTTTCAATAGTGAGGAAAATCAAACCTATTTTTCAATTATTTTTGAG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAGACCTAATTACCTCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //