Array 1 34-794 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWQJ01000018.1 Pseudomonas aeruginosa strain L26 L26_L1.R1.clean_(paired)_contig_18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 34 29 100.0 32 ............................. AGGTACTACTTCCAGTAGGCCTGGAGCCTGCT 95 29 100.0 32 ............................. GGGGTGGTAGCACCGGACTCGCGGATCTTGAA 156 29 100.0 32 ............................. GCGTACATGACTGAGGGAGAGTCCACGGACCT 217 29 100.0 32 ............................. TCATATAGCTTGTATTTTTCCTTGCTATGAGA 278 29 100.0 32 ............................. AAAAACGACGGCATTCACTACGCGCGCCAGGC 339 29 100.0 32 ............................. GCGTTCATTTCCCAGGACGTGGACCAGCTGCG 400 29 100.0 32 ............................. GCCCCAAAAAGCGTTGGCGTCATCGGCTGGCT 461 29 100.0 32 ............................. TTCATGAACGGCAGAACGTTGAGCGCCGATTT 522 29 100.0 32 ............................. GTTGTTCTAGAGTCCGTTCAGGAGATGCTTCT 583 29 100.0 32 ............................. AGGTATTCCTTGCCCTTGGCCAGGAGCACGCC 644 29 100.0 32 ............................. TCATCGATCGTGGCGGCTGCACTGGCTGCCTG 705 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCG 766 28 79.3 0 A..........A..C..-.....A....T | C [770] ========== ====== ====== ====== ============================= ================================ ================== 13 29 97.6 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGTTGTCCACGTGTTCGTTGAGGAGATGCTTCTG # Right flank : TGTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCATGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTAATCACCAGTGTCAGCCGCCAGTTGCCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCACGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCTGTGGCGGAAGGAAATAGATTGTGAACAGGCGGCAAGTGAAGGTTGTTAGTGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGGAGCAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTCA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [26.7-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 9967-11705 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWQJ01000018.1 Pseudomonas aeruginosa strain L26 L26_L1.R1.clean_(paired)_contig_18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 9967 29 100.0 32 ............................. GGATTGCTTCGCCCATCTGCCGGGCCTTGCGA 10028 29 100.0 32 ............................. ACCGGATGCAGTCTTAATCCCTTTTTGCGTCG 10089 29 96.6 33 ............................A GTTATGCTGGTGCTGTCATAGATCATGTCGAAC 10151 29 100.0 32 ............................. CTCTACGACGAGAAGTTTGGCCTGTCGCTACT 10212 29 100.0 32 ............................. TCTATGGGAGGTGGGGAGTGAACGAGACCGTA 10273 29 100.0 32 ............................. TTGAGGGCAAACGACGTTTTGCCCATCGAGGG 10334 29 100.0 32 ............................. TAACGGCCCGCCCCTTCACGCGACCTCCCGCG 10395 29 100.0 32 ............................. CCAAGAAAGAACGCCGAAAGGCCGTTAGGAAA 10456 29 100.0 32 ............................. ACGTTGAGTACGTCGGCGCCGTACTTTTCGTC 10517 29 100.0 32 ............................. CGGGCCTTGGCAGCGAGCAGGGCCTTCATGCC 10578 29 100.0 32 ............................. CGCACTGATGCCAGAGCCGGAGTCGCGACCGG 10639 29 100.0 32 ............................. TCGGCCATCACTGGCAAGGTGCGCGAAGGCGT 10700 29 100.0 32 ............................. GCGCTTCACGGAGACGGCCTGCTGTTCCCTGC 10761 29 100.0 32 ............................. TTCAGCAGGGCGTCAGGGATGGCATCGTGTCC 10822 29 100.0 32 ............................. GCTACTGTCGAAGCCGGCACCACTCTGGACGC 10883 29 100.0 32 ............................. GCCGGATTCCGCTGCCGGGCTACATCATCCCG 10944 29 100.0 33 ............................. CGGGGCATGACTTCAACCCACCCCCAGCCCTCC 11006 29 100.0 32 ............................. TCGCACTTCCAGCCATGGCTGGACAAAGCGGC 11067 29 100.0 32 ............................. GCAGTCAAGGCTGCCGGCGGCCAGTCCGCCCT 11128 29 100.0 32 ............................. GCCAGCAGGGATGCCAGCACGCAGCCAGTCGC 11189 29 100.0 32 ............................. CAGTGACGGCAGCAGACGCGGCGATGCTGGAT 11250 29 100.0 32 ............................. TCGGTAGACGCACAGATGGTCGAGCAACTTCG 11311 29 100.0 32 ............................. GCGCAGGGCAAAGCCAAGGTCACCGCCGGCAC 11372 29 96.6 32 ...........A................. TTCGAGGTCAGCGGCTTCGGCCCCGGCGAGCA 11433 29 96.6 32 ...........A................. CCGGGAATGAACGTTCCCATGTCGGCTACGCC 11494 29 96.6 32 ...........A................. GTCGCCAGGCCCACGTCGGCGGATCACCAACA 11555 29 96.6 32 ...........A................. ATGTAGCTGTTACGCGGTCCCGCGGTGCTGAG 11616 29 96.6 32 ...........A................. GTGATGGAGCGGACCGCCCCGAGCACCGCAGA 11677 29 93.1 0 ........T..A................. | ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.1 32 GTGTTCCCCACGTGCGTGGGGATGAACCG # Left flank : TGACCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTCGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGGCACAGGACGCAAGGGTGAGCTTCCTGGCCGTAGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATTCTGTACGGTAAGT # Right flank : GTGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGCCGGGTCAACCGGAACGTCGAGCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACGCCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGATAGACCGGGTTGCCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGTGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //