Array 1 1727-1881 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMPM01000248.1 Bifidobacterium bifidum IPLA 20015 Contig241, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1727 36 100.0 30 .................................... TATCTAACCACGAATATAGTTAGACATGAG 1793 36 100.0 30 .................................... CTTGGTCGCCCTTGAAATCGAACTGTTGGG 1859 23 63.9 0 .......................------------- | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 88.0 30 TGGTCAAAGTCATTGATCTGACAGGCATCTGAAACA # Left flank : GGGAAGCTTCCCGGACGGGAACGGCGCGCTCATGCTCGTCTGTGCGCGCATCAGGTACGTCACCGCGAACGAATGGTCCAACCGGCGTTACCTCGACATGTCCCGGCTCGGTGACAATCTGCAGGAAGCGAACCGGTCATCGCGCCATGGGCGGGCATGATCCAAAGTGCGCAACCTTTCGGGCACTACCTCCCAAAACCTCCACTGAACGGAAAAATCAAGCCACAACAGACACTGTCAAACAGGCTTACACACCTTGAAGCATGAAAAAAGCCATCAGGGACTTCCTGATGGCTGGTCATTTGCGGTATGCGCTCCACTTATTCCTTGGGCATCGGCCTGAGGCCGCCAACGACAGCGCTCTTCACATAGGATGTCACTATAACAGTCCGAATATTGTGCATCAATCGTTTCCCATATGTCACCAGAATCAAAAGCACACCCCGGAAGCTATCCAGAAGACAGCAACAGAGGTGCCCCTAACACTATTGCGCATCACT # Right flank : | # Questionable array : NO Score: 4.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.40, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGGTCAAAGTCATTGATCTGACAGGCATCTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.10,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 1 221-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMPM01000307.1 Bifidobacterium bifidum IPLA 20015 Contig307, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 220 36 100.0 28 .................................... CATCCCCCCCCCCACGAAAGGAACAACA 156 36 100.0 30 .................................... AAACTCACGCCGCTTAACTTGGCCTGCTGG 90 36 100.0 30 .................................... TCATGTCTAACTATATTCGTGGTTAGATAT 24 24 66.7 0 ........................------------ | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 91.7 30 GTTTCAGATGCCTGTCAGATCAATGACTTTGACCAC # Left flank : TGTCAGATCAATGACTTTGACCACCCAACAGTTCGATTTCAAGGGCGACCAAG # Right flank : T # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGATGCCTGTCAGATCAATGACTTTGACCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.10,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 223-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMPM01000362.1 Bifidobacterium bifidum IPLA 20015 Contig365, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ========================================== ================== 222 24 100.0 42 ........................ GACTTTGACCACGTGGACAGTGCGGTGAGCGCCTTGGTGGTG 156 24 100.0 42 ........................ GACTTTGACCACCGTCGGCACCTACTACGTCACATGCCCGTA 90 24 100.0 42 ........................ GACTTTGACCACTTCGCTCTCCTTCCTTGAAGGATGCTTCGA 24 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ========================================== ================== 4 24 100.0 42 GTTTCAGATGCCTGTCAGATCAAT # Left flank : TGTCAGATCAATGACTTTGACCACGCGGATGTCGCCAATTCCAATTCGATGTG # Right flank : T # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGATGCCTGTCAGATCAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 55-210 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMPM01000495.1 Bifidobacterium bifidum IPLA 20015 Contig522, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 55 37 100.0 29 ..................................... TGTAACACCCGCCGCGAATCGATCACGTA 121 37 100.0 29 ..................................... CTCAATTTTTTTGCAACATCGCGTGTATT 187 24 64.9 0 ........................------------- | ========== ====== ====== ====== ===================================== ============================= ================== 3 37 88.3 30 GTTTCAGATGCCTGTCAGATCAATGACTTTGACCACT # Left flank : TGTCAGATCAATGACTTTGACCACGAATGTCGGTCACATTCAGCGCGTTGTACTG # Right flank : | # Questionable array : NO Score: 4.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.41, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGATGCCTGTCAGATCAATGACTTTGACCACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.70,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //