Array 1 5186-3895 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIMFC010000022.1 Streptococcus gallolyticus strain BSJ31 BSJ31_Scaffold22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 5185 36 100.0 30 .................................... CTGGTAGTCGTACTGGTTGCGATAGTAATC 5119 36 100.0 30 .................................... ATTGCCGAGTATGCCCACTGATGGTCCTTC 5053 36 100.0 30 .................................... TAGCCAAATTGATGCATATTTGCGACTATC 4987 36 100.0 30 .................................... TCCGCAAGTTCAAAAAAAGACCTCTTTTGA 4921 36 100.0 30 .................................... TGTCTATCTGAACCGTCAAAAAGACAAGGA 4855 36 100.0 30 .................................... CTTTCAAATGTAGCAAAGACAGTTATTGGT 4789 36 100.0 30 .................................... CTATACGGAAAGGATGGTGGTTAGATGGCT 4723 36 100.0 30 .................................... TGCTACTGGTCGATTTTGACAAATGAAAAA 4657 36 100.0 30 .................................... TAGATGTTGTTATGGATAACAATTGCTCTA 4591 36 100.0 30 .................................... CTGCTCTTAGAACTTCTCCGTCTTTTCTAA 4525 36 100.0 30 .................................... AATCAAGCCAAAACATCGTTTACAGATGTT 4459 36 100.0 30 .................................... CAGTATGATTTTGGTCCAGGTCGTATCGTC 4393 36 100.0 30 .................................... AAGGCACTTGAAAGCCCTTGATAAGATACT 4327 36 100.0 30 .................................... GAGTTCTACGTTAATACCAAGGCCCCAGGC 4261 36 100.0 30 .................................... GAGGTAGGATAGATGGCAAAAACAACCAAA 4195 36 100.0 30 .................................... GCGCTGATCTAGCAGTTGCTTTTGGCAATA 4129 36 100.0 30 .................................... TTCGTATTTCTGGCTAAACCATGAACTTAA 4063 36 100.0 31 .................................... CCCCCTACCGTGATGATTGTCCGCTTGGTCT 3996 36 100.0 30 .................................... GTCGAGATTTCTTTTACTATTGTCGGTTAA 3930 36 88.9 0 ...............................CC.CA | ========== ====== ====== ====== ==================================== =============================== ================== 20 36 99.4 30 GTTTTAGAGCTATGTTGTTTCGAATGGTCCCAAAAC # Left flank : ACGGAATTGATCGCTTTTGAGTGTTTAGAAAATGAATTGGATTTAGAATATGATGAGATTACTATTTTAGAGCTCATTAAAGCACTTGGTGTGAAGATTGAAACGCAGAGTGATACTATTTTTGAAAAATGTTTTGAAATTTTACAGATTTATAAGTATCTGAGTAAAAAGAAATTGCTTGTATTTGTCAATTGCGGTGCCTATCTGACTCATCATGAGCTAGAAAAATTATTTGAATATATTCGTTTGTCAAATCAAACTGTTCTTTTTTTAGAACCAAGAAAACTATATGATTTTCCTCAATTCATTTTGGATACAGATTATTTTCTATTAACAAATGGGGAATAGGTGGAGTAGCTTGGTAGAAACGTTGATATATTCGCGTTTTTGCGGTACAATATATAAGATAGAATGATAAAAAATGGAATCGTTCGAAGCTGAAATCTGGCTGAGATGAATGGCGCGATTACGAAATTTCGTGATGAAAAATGGTCCACGAG # Right flank : TTTTCTCCCACTTCTAATCTTAGTTGCTCTCTCATCTGAAATTCTGTGCTATAATAATATATAAGTAAACCAAGGTGGATATATGATGGATAAAAGGCTCTACTGGTTAGCGGCAACCGTTTTTTTGGCGACGGGAGTGGCTATGGCAGGTGTTTCTTATATAGGAAGTTATGGGATGACGCTCTTGTCAGAAGTGACTTCGGATGTAGATGATAATCAGAAAAAGATTATACTTGAACATGATAAGGCGGCCTCTAATAGTGATGAGGTAGTGATACATGGTAAGGATATTGAGATTACAGCTGGAGGAGAATTCTATATTTCGGGGATTGGAAAAGAAGTCTCTATTCAGGTTGCAGAGCAAGTGACAGATGATGTTACCTTAGTTCTAGATGGAGTAGATATGGCTTCTATTTCCATGCAATCGCGAGGGACTAATATTGTCCGACTGGAAAAAAATTCTAAAAATAGCTTGTCTAATGTTGAGACGGGGATCACAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTCGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //