Array 1 98926-97730 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP036261.1 Rosistilla ulvae strain EC9 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 98925 36 100.0 35 .................................... GGTTTCCTTGCTGCCATCCTCGCCGTGTTGGCGGC 98854 36 100.0 36 .................................... CTGCCATCCTCGCCGTGTTGGCGGCGGTTGCTTCGG 98782 36 100.0 39 .................................... GCGGCTTGCTGACGACTCAGCGGCCGAGGTGAAATCCTC 98707 36 100.0 37 .................................... AGGCGGAGCGGAAGCAGGCGGCGAAGCGTAGCGAAGT 98634 36 100.0 36 .................................... GGCCAAGAAGTTGTCCCGCACATCCACACCGCCAGC 98562 36 100.0 36 .................................... GATTTGCCAAAACGCCGGAACGCGTGCGCCGGTACA 98490 36 100.0 37 .................................... CCCGAATCCGCGGCAAGTCTAACAAGTACACAGTGGA 98417 36 100.0 35 .................................... ATGCCATGTCGCTTCTCGGCTTGCTCAATCGTTCT 98346 36 100.0 37 .................................... TGTCCTCGGGACAAAGACCCGCGGAGGCCCACCCCCA 98273 36 100.0 34 .................................... GGGTCAAAATCCAGAATGGCCTCACTCACTTCAC 98203 36 100.0 39 .................................... CCTGCGAACGGTTCCTCTGTGCAACAGGTAGAATATGAC 98128 36 100.0 35 .................................... GATCCTGGCGACGGCGACTTCGCTGGGATCCTGGA 98057 36 100.0 36 .................................... AGTAGTGGATCGGTTCAAGCCCCTTTGTATATCCAG 97985 36 100.0 38 .................................... ACCCCTTCATAGACCAACACCACGACGGTGCCGATCAG 97911 36 100.0 35 .................................... ACGCTCTGCTTTTATTTTCCCGGCCTGATCCATGC 97840 36 94.4 38 ...............................A..A. GTCTGACTGGGGGTCAACAGGTCGCAGGTTCACCTCGG 97766 36 77.8 0 ..C....A.....A.C.....GC.A.....G..... | C [97757] ========== ====== ====== ====== ==================================== ======================================= ================== 17 36 98.4 36 CTTTCCGTGACCATCGAGTCACGGCCTCATTGAAGC # Left flank : ATTTGATGGAACCGTTTCGCCCGCTGATTGCCGAATCGGTCGTCCTCTCCGCAGTCAACAACCGGATGCTAACGCCGGAGCACTTTGTGCCTGGGGGCCGCGGAGTCTTCCTTTCGGACAGTGGCCGCAAAGCGTTTTTTCACGCCTATGAATTGCGGATGGATCAGTTGGTAACCCATCCGTTGTTCGAATATCGAGTCAGCTATCGACGGCTGCTGGAAATCCAAACGCGGCTGATGGCGCAGATGGTCCGCGGCGAGATCGAGACGTTTCCGGTCTTCGTAACCCGCTGAGTCGACTTCATTTTTTTGGACCTTGAGAACTGCGAGCGGCCAGGTGCCGTGAAAAACCGGCCCCCCGCTCGCAGTCCAAAAACCGAGCAAATCCCAGTACAAGGAACCAACTCAATGCACTCCCACCTCCCGTCAGCTCCCATACCCGACAACCGCTCGCAGACTTCCGCTGCAGCCGCAGAAATTGTACACTCAGCCCCCTGGGCT # Right flank : TGGGGGATATAAATGTCCTGCGACGGCGTTGCGGCTCCCAGCGGTCCCGCAGTGAGCACAGGCGTGGGGGCGGCGTTGGATATACCAGCACGAAGCGCTAGCGAGTGATCGAGAGCCAAGCGTCGGTGCCGTAAAAAACACTCGCTTGCGCTTCGTGCTGGTATGGGAACGTTGTTCGCTTTGCAGAAGACCGGTGATTGGCGATCGACATACCTGCACGACGCGCTAGCGAGTGATCGAACGCCAAACGTCGGTGCGGTGGGGTTCACTCGCTTGCGCTTCGTGCTGGTATGGGATCGTGTTGTTACCGGGTTAGGCCGAGCAGTTTTAGCATGTCGGCTGTCGGTTGGTCGAAGGTTTTGATTTGAGTCGGGGTGTCGGGGCGATTCTTGTCGCGAAGGATCACGATCACTTCCTGATTGGAGGCGATTCGTGCCGCGGGGGCGGATGCAGCTGGCGACGTGACGGCGGCTAAACGCGTCGGCGGTTTGGGGACATTG # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCGTGACCATCGAGTCACGGCCTCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.50,-8.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 3479250-3481515 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP036261.1 Rosistilla ulvae strain EC9 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================= ================== 3479250 31 100.0 35 ............................... GACGACACTGACCACGAAGCGGAGCTTGCTGCGGT 3479316 31 100.0 37 ............................... CGTAACTCATCCGCCCCTTCCTCGTCGTCGTCGCCGT 3479384 31 100.0 38 ............................... GTAGTCCCCGGAATCGCTGTCTTCGTCCGAAACGGGGT 3479453 31 100.0 38 ............................... TCGCTGGCTGCCATCAGGACCAACGCCTGCCCCTGCGT 3479522 31 100.0 36 ............................... AATATCTCCGCGGGTGGATGCAACCGCAGAAAGTGT 3479589 31 100.0 39 ............................... AGAATGACCAACCGTGTCACACTCACTGCGGACGATAGT 3479659 31 100.0 37 ............................... CGCAACCCAATACAACGCCAGCGCGATCGCTTTGGGT 3479727 31 100.0 36 ............................... CGATGTCGATCCCGTAGAGGACGGCTGAATCTGCGT 3479794 31 100.0 36 ............................... CCGGTCTGTCGCAAGGTCTCGCACTAGGTCGATGGT 3479861 31 100.0 36 ............................... CCGTCGTTGGCTCCAAACCAGTCGGCGATGAACTGT 3479928 31 100.0 35 ............................... GTCGTTTTTGATTGCCCAGGATGCGAGGATTACGT 3479994 31 100.0 38 ............................... ACCGTGTCTTCAATGACGATCTCGAAACCGTAGAGCGT 3480063 31 100.0 38 ............................... ACTCTGGGATACGACTCGAACCCACACACGAAGGATGT 3480132 31 100.0 37 ............................... TTTGAAAAGCTTCTGCACGATTTTTGTAACGTCTGGT 3480200 31 100.0 38 ............................... TGATACCCCGACTGCCGGAAAGCTTACCGTGGAAATGT 3480269 31 100.0 38 ............................... GTCGAAGTCAACGGAAATCGGAAACGTAAAACCCTTGT 3480338 31 100.0 37 ............................... TCGTGACAGACGAAAACCAACTGACCACCACCGACGT 3480406 31 100.0 36 ............................... CGCTGTGACGCGATCCGTGACGGGCCCGTTTGGCGT 3480473 31 100.0 36 ............................... CCCTACCGCGGTCGCCATGATCGCAATCGCCCTGGT 3480540 31 100.0 36 ............................... CCTCGACGTGAAGGGATTGCGGGAAGCGATGGACGT 3480607 31 100.0 35 ............................... GACGTCGGTTCCGGCGATGTACGTCAGTCTGCCGT 3480673 31 100.0 37 ............................... GCCCGCATTTGGGGCAACAAATCGCGGGTGGACGAGT GT [3480694] 3480743 31 100.0 38 ............................... CATCGCCTGGAACGGGACAGCGAAAGCCTGGTCAGTGT 3480812 31 100.0 37 ............................... ATACCTCAATCCTCCGATAATCACGTCGCGCACCGGT 3480880 31 100.0 37 ............................... ACTGGCGAGGGTGCCGACCCCTGTGTCTCGTGTGCGT 3480948 31 100.0 36 ............................... CGCTGACCCATGATAAACAAGGCCAAGACGGAATGT 3481015 31 100.0 36 ............................... AGGTTGCGTTTACCCTTCGCAACGGAGAAACAGCGT 3481082 31 100.0 36 ............................... TATCGAGTGCGGCGAAGGCGAAATTGAGGGTGAAGT 3481149 31 100.0 37 ............................... CAGCACGACGGGAAGTTGGCGTTCGGGGTGCGTGCGT 3481217 31 100.0 38 ............................... CAGAAGCGACACGAGGATTCCGCCGCGTGGATCGACGT 3481286 31 100.0 35 ............................... AATCAGATAAACGCGATACGGGTAGAGCCCCCCGT 3481352 31 100.0 35 ............................... CGCTTTACCGCACCAGTCACCCGAGCGAATAGGGT 3481418 31 100.0 36 ............................... ACGCAAGACGTTGAAGAGCCAGCGGCATCCCCTGGT 3481485 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ======================================= ================== 34 31 100.0 37 CGCGTCCCGCACGGGACGCGTGGATTGAAAC # Left flank : TAATCCGCCGTGTATGTCTTGGTAACCTATGACGTCAGTACGACAACTGCTGAGGGACGCAAGCGATTGCGGAACACGGCAAAGATCTGCCTCAATTACGGGCAACGCGTGCAAAACTCGGTTTTTGAATTATTGATCGATCCAGCGCAATGGGCTCAGTGCAAAGCGGAACTCTGCGACACGATTGAACCGCAGACCGACAGTCTGCGATTTTATTATCTCGGGAACAATTGGAAAAACCGCGTCGAACATGTGGGAGCCAAGCCGGCGATCGATCTCGAAGGACCGTTGTTTGCGTAGCGGTTGGTTCCAGCTTAATGGTGTGCGAACCGCAAGTGCTGGAGAAAAACGGGAGAGGTTCGCGATTTAGCAATCACTGCAAAACATTGTCCTACAGCGATGGGACAACTCTCTGTGTTCGTTTCTCGGGCAAAGCCGACGTAGGTTCGCGAAACCGGCATCTTAACACCAAGGGACAAAACAGGTTACACTCCCGGAGT # Right flank : CCGAGAACGGACCGAATCGCTTTTTGTCACCGCGTGGATTGAAACAAGGCGCTCACACCGCTCGTAACCGCCGCTGCGCTGGCGTTCCTTTTCCTTTGCTTCAATTCATGCGTTCCACTCGCGTTCGCGGCCCATTGTGTTCTCTTCCCCTGAGGACGCTACAACGCTTCGTTTTCCTATCCGATTCCACCAAACGCCGAGCGTTGTCAATCGCGATCCTGCCAGTTGCCCCTCCGAGACTCACGGCATCGCTGGCGGTTTTGCCAAAGGAATGAAGGTTGTCGTTTGCCCTGCAAACGAGATAACTCGATCGCTACACCGGTCAAAAAATTGGCGCTGCGGATTATGAATGCGCGGCGAGTTGCCGTTTGCTGTGGAAGGGGGGGCCGGGGGATGGTCGCTTCTCGGATCGTGTGGGCCGTTTTCTATCGTTCGCCATTGTGCCGTATGACGCGTTTGTCCCAGCGGTTCCAAGAACGCGATGCTGCTCGCCGTCATGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCGTCCCGCACGGGACGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CGCGCCCCGCACGGGGCGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.50,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.15,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //