Array 1 580-17 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI913950.1 Leptolyngbya sp. PCC 6406 LEP6406DRAFT_scaffold2.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================ ================== 579 35 100.0 41 ................................... TTTATAGGCTCACTCCGCCCGTCATGGTTGCAAAGCAAGGA 503 35 100.0 38 ................................... TACGACGTTACGGTAGGTCTTGCGTAGGGCTTTCCCTA 430 35 100.0 38 ................................... TTGACGAATGATCTTCCCCGTCTATACGCCTTTACACT 357 35 100.0 37 ................................... CCGTGGCTCGATACCGCTGCCCTTGAATCTCATACTC 285 35 100.0 44 ................................... ATGAGCGAAGCATAGGGTTGATGCAGGGTGATTATTTTCATGGT 206 35 100.0 42 ................................... ATCCCGGTGCTTTTTGCTGATCACCACCTCTAGCGGTACCGA 129 35 100.0 43 ................................... TACATAAAGCTCCGGAAACTGCGCTTGCAGGTAGGTGCGGCGC 51 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ============================================ ================== 8 35 100.0 41 GATTCATCTCCCATTCCCCGCAAGGGGACGGAAAC # Left flank : GCCGACAATCGCCGCCGCAACAAGCTGGCCAAATTCCTAGAGGGCCAAGGGCGACGGGTGCAAGAGAGCGTCTTTGAATGTTTTGGCACGCTGGATGAAATGCAGCGCCTCCACCGCCAGGTGCTGCACCGCACTCACCCCGATGAAGACAATGTCCGGTTTTATTGGATTCCCGCTGGGGCGATGGCCAAGGCTCTCACCATTGGCAGCGACCCACCGACCCCGCCGCCCCAAGCCTATTTTCTGTAGGGAAGTTCCATGGACTTTTTGGGCTGTGACCCATACACTGGTTAGCAAGTTATGGTGAACACCACACACCTACCCTGCACCTAGAAAACTGCATAGTTACGTTAACCTTCGTGGATCGTTGATTCCGTATGGGTTACAGTCTTTGACAAAGGGCTAAAATTGCCAACAACGGATGTTTGTTGACAGGTCTCTCCCCCCTCTGTGGTTTCAGAGGCTGCAAGCCAGTATCCACAAGGCTTTGAAAATGAGGA # Right flank : CCATCGGTGGCCCCATC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTCATCTCCCATTCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.50,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [8.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 2 5292-3253 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI913950.1 Leptolyngbya sp. PCC 6406 LEP6406DRAFT_scaffold2.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================== ================== 5291 35 100.0 36 ................................... ATGGTGAAATCGCCCTTATCGGTTTCTACCCGAAAC 5220 35 100.0 34 ................................... TGAGTGCTGTTGGCAGAAAGCGGTCACAGTGTTT 5151 35 100.0 38 ................................... ACCGGAGTGTTATTAGGTCCTACATAGTCCACGAGACG 5078 35 100.0 36 ................................... TGGCTTTTCTTCTGTCCCTTGATACCGTGCCTCATC 5007 35 100.0 34 ................................... CCAATGGCTGCTCCTACTGTGACATCAATGAAGT 4938 35 97.1 36 .........T......................... GCGAGTGCAGTAGCTAGAAGCCACTCCACCGAACCA 4867 35 100.0 34 ................................... AGGGGGTTGTTTTGGTCCCAACCGTACACCTCGA 4798 35 100.0 35 ................................... GGTAGGGGTTTGACACTTACGACTGGAACTGGATC 4728 35 100.0 42 ................................... CTTGAAACGCTTCTCGGATCTGGGGTTCAAGCAAGAACCACC 4651 35 100.0 34 ................................... GGGTGACGGCTCCCGTCCTCGTCACTGTAGTCCG 4582 35 100.0 41 ................................... CCGCCGCCATTCCATGGAAAGTCATGGCGAATGCAAAAGTG 4506 35 100.0 35 ................................... AGTCACAGTCGACTATGATGGGGCCCACTATTGTG 4436 35 100.0 38 ................................... CCCATGTCACCCAAGTCGTTTCGCAACGAGGTGATGAC 4363 35 100.0 37 ................................... CCATTGGTATTCCCGGTCGCGCACGATTGCCCGACTC 4291 35 100.0 36 ................................... CCTTTCCACCGTGGAATTTCTTCAGATCCGAACAGG 4220 35 100.0 34 ................................... CAGGTCTGTATTCTGTCGCCTTCGAAGGCGGCCG 4151 35 100.0 41 ................................... GTCTCTAGGCAGTCGCCTTAGAGAGTTGGCCCCTGTTGACC 4075 35 100.0 34 ................................... GATTTCTCTGGCTTCGTCGCAGGCTTCGTCACTG 4006 35 100.0 38 ................................... CTCATTTTCCGGATCAGTGTCAATACAGCCGTTACCTC 3933 35 100.0 36 ................................... AATTTGATCTTGAAGAAGGCGTTGGAGCCCTTCAAA 3862 35 100.0 38 ................................... CAGCTTCGGGTTCTGGAGATCCTTCTTCAGCTGGAGCC 3789 35 100.0 39 ................................... GCCTCCTCCTTAGAAGGCTGGCGGTCGTCGCCTCCAGAC 3715 35 100.0 35 ................................... CGTATCGTTCAGCTGCCCGTTGTTCGACCGACCAG 3645 35 100.0 37 ................................... TGCTGTTGGCCTACCTGGATGGTCGTCGTATCTCCAG 3573 35 100.0 36 ................................... CCACGATTGGTGCTCAGGGGGGCAACAATCCGGGAA 3502 35 100.0 39 ................................... TCTTCAGTGGCATATCCACCAGCCAGGGTTTGGCATGCC 3428 35 100.0 35 ................................... CCGATAACCATCGACGCAATGAGCCAAAGCGCCAT 3358 35 100.0 36 ................................... GCCAGAGTCAGGGCAATAGCCACCCACACAATTGCT 3287 35 97.1 0 ..........................A........ | ========== ====== ====== ====== =================================== ========================================== ================== 29 35 99.8 37 GTTCAAAATCCCTTACCCCGAAAGGGGACGGAAAC # Left flank : GATCGCGGGTGCGGCAATATGTGCCCCCGGCGGAGCAGGCGGCGGTGTTGGCGGTGCTGGCGCGGCGAACGCCCCAGGATGTGTACTATGCGGGCTGGGTGCGGCTGGGGGATATCAATGTGGTGATGCGCCTGCGGGACTGGCGACCCCAGGGGGAAGCGATCGCGCCGTGGGGGTTGCGGCAGCAGATGGCCCAGGAGGCGCAGCGGGAGATGGCTCACTATGAAGGGTGAGAATCTTGGGGATTTTGGTAGTTTTGTGGCAAAAATTGGCAGGGGTGGCTATGATGATGCGCAAAGCTCCCAAATCTGAGGGGGTCTACCGATCCTTGAAAACCGCATAGCTTTGTCAACCCCCTCAGAACCCTTGCGTAGCAAGGGTTTGAGTTCTGTTTCCAGAGGGGTTATTGATAGCAATTCTCAATTATTTGACCTTCGGTTAGACCCCCTCAGATTTAGGGGGTTGAAACCCTTACACAGCAAGGGTTCTAGATCGGGGGG # Right flank : GACGGGGAATCAGAAATCAGAAGCCTGCCCTGAGCTGGTCGAAGGGGCAGAAGGATGAATGGGATTCGGGTGAGGACTTGAAAGTCTTCTCACTCAGGAACTTATCTCAACCGTCGCACCATCCTAAACACCCCACCAGCCACCTTTTCTGCCTTCTGCCTTGAGTTCTGCCTTGCCTTTTCCCCTGAAAGTAAGCACGCTACAATCCCCTCATCCCAATCAGCATCGACAGTATGTCCGCACCTGAGCGGTTAGAAATGTCCCTCGCTAAGGCAGAGTATTTGTTGACCCGTGCCGCTGCACCGGGTCAAGGAGGAGATAAGCAGAACTTCTGGCGCAATATCCTTGCCTTTGACTCAGCCGCAGCTATTCGCAATGCCATCCTCAGAGAAGTCTCAGTGGATATGCTAGAACCCAAAGGCAAGAGCCCCTTTGGAGAGCGCTATCAAGCTCAAATTCGGGTGACGGGTGCCAATGGCCTCTCTCGACCGATCTTGACC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAAAATCCCTTACCCCGAAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 3 32778-31533 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI913950.1 Leptolyngbya sp. PCC 6406 LEP6406DRAFT_scaffold2.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 32777 35 100.0 35 ................................... GCTTGGGATCGGGCTTGGGCTTGGAGTCGGACTTG 32707 35 100.0 34 ................................... AGAGCCAGGTCGGTGTAAAATAGCACTCCCTCCT 32638 35 100.0 39 ................................... TGCACAAGCTGTTCTAGCTCTGCCTGAGCCACGTAAGCC 32564 35 100.0 37 ................................... GGGTCGTGGTATCTCATTGGATCCATCATCTGGTCAG 32492 35 100.0 35 ................................... CTCCAGATGTTTTTAGAAACGCATCAAATTTTTCA 32422 35 100.0 37 ................................... GACACCTCCCGACGACTTTACCAGCCAGGATAGCATC 32350 35 100.0 37 ................................... GCCAGAAATGCCTTGTCTAGCATAATTGCCTTCCAAC 32278 35 100.0 38 ................................... TCAATGTGCGTTCGCACATCAATGCAGGTTTGCATCTG 32205 35 100.0 35 ................................... GATCGATATCCGCTTGGGTGAAGGTGTCTGTCCCT 32135 35 100.0 41 ................................... GCATGGCGATGGTCGTAAAGCTGGATGCTGTGATCCAGAAC 32059 35 100.0 33 ................................... GCGGCAGCGAGCAGCGGCGAGGGGAATACCCCG 31991 35 100.0 35 ................................... TAGCCTGGGCAGCTGCGCTCAGCTGTGCCGGACCA 31921 35 100.0 35 ................................... CCAACTGCCCCATAGTACCACCCGGTGGTATATGA 31851 35 100.0 36 ................................... CATAGAGCGTCCCAGCGTAGGCGTTGGCAGCACCGA 31780 35 100.0 36 ................................... ATTATGGCTTCAGTACTCTCCCTCATAGCCTGCAAG 31709 35 100.0 33 ................................... CACGGAACGTCGTCTGCTTGCTTGCCATGAGGG 31641 35 100.0 39 ................................... AGAAGATGCATCACCAACTGGGGTGACGACATCGTTCTC 31567 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================= ================== 18 35 100.0 36 GTTCAAAATCCATTACCCCGCAAGGGGACGGAAAC # Left flank : AGCACTGGGTCACCATTCCCCCTTTACATGAGGCCAGCATCCGCAAGCACAAACTCAAGAAAAAACTTAGCCGCTGCGACCTGATCGTGATCATTGCAGACTATATGAGCCACCCACTCACCCATGCCATCTATGGCTTACAAGCCTCCGGATCTCTCAAGGGAGAAGTCGTTTTGCTGAACTGCCACGGCAAAAGCGGTGTCCTGCGCGACATCCTCTACCATGTGAATCGCCAAAATATGGAGAAATAATTCGTTTTTGTCACCCAGAACCAATTCTGGGGTTATTCTCTACCAAGAGCTAGCGCTTTCGCTAGGGTCTACCGATCCTTGAAAACCGCATTATCTCGTCAACCCTAGCGAATCGCTTACCCTGCAACGCTTTCAGCCGTTTTCCACAGGGGTTTATTGACAGCAATTCGCAATTATTTTGACTTCCGTTGAACCCTAGCGAAAACGGCTTCTGAAACCCTTGCTCCGTAAGGCTTCCAGAAGCCGGGG # Right flank : GATGGGAAATCAGAAATCAGAAGGATGAAGGATGAATGGGACTCGGGTGAGGACTTGAAAGCCTTCTCACTCAGGAACTTGTCTCAACCGTCGCAACATCCTAAACATTCCACCAGCCACCTTTTCTGCCTTCTGCCTGCTCCGCACGGACACAGCCCTACATCCTTTCCCCAAATCCATTACCCCGCGAAAACTAGACCTCCGAGGTCTGACGTGACGTGGGACTCACTCCCAGAAAGCCTCTTCATGCCATCAGCTACCGCAGCATCCCCGATACCCCACCAGCAGACTTTTCTACCTTCTGCCTTTCCCCGCAAGGGGACGGAAACAACTGTGTCGTATGTGGTTCTAGTTAAATTCAGCGTTAAATTAGTGGTAGACGAGTCGTCATCCTGTTAGCAGCTATGGATAATGGGGCTTTATTGAAGATTTTGGAGCGCAACCCCGATCTCGTGAGTGGAGCTTGGGTGTTTCGGGGAACGCGCGTGCCGGTGACAGCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAAAATCCATTACCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.74 Confidence: MEDIUM] # Array family : NA // Array 4 195525-193710 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI913950.1 Leptolyngbya sp. PCC 6406 LEP6406DRAFT_scaffold2.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================================================================================================================================== ================== 195524 35 100.0 41 ................................... TTTATAGGCTCACTCCGCCCGTCATGGTTGCAAAGCAAGGA 195448 35 100.0 38 ................................... TACGACGTTACGGTAGGTCTTGCGTAGGGCTTTCCCTA 195375 35 100.0 37 ................................... TTGACTGTGAACCACATAGAGGGCTTGTAGTCTCCGG 195303 35 100.0 38 ................................... TTGACGAATGATCTTCCCCGTCTATACGCCTTTACACT 195230 35 100.0 37 ................................... CCGTGGCTCGATACCGCTGCCCTTGAATCTCATACTC 195158 35 100.0 43 ................................... CTCATATAGGACTCACTCAACCCAGGCCAGTTGACACCCCCAT 195080 35 100.0 44 ................................... ATGAGCGAAGCATAGGGTTGATGCAGGGTGATTATTTTCATGGT 195001 35 100.0 42 ................................... ATCCCGGTGCTTTTTGCTGATCACCACCTCTAGCGGTACCGA 194924 35 100.0 43 ................................... TACATAAAGCTCCGGAAACTGCGCTTGCAGGTAGGTGCGGCGC 194846 35 100.0 38 ................................... CATCGGTGGCCCCATCAAAGGTGGAATACTCCAGACGG 194773 35 100.0 41 ................................... ACGGCATCAGCGATAGGATCGTCTAGAACCCATTCTGCCAA 194697 35 100.0 38 ................................... ATTTCACAGGCTTGCACTGTTGAATCCTTGCCCTCGTC 194624 35 100.0 46 ................................... TTTGAGTTGCAGATGGACCTCAATCGCATCAACGAACGCAAGAAGA 194543 35 100.0 43 ................................... AATGTGAATTGACTAAACAGTTGAACGGTCTCTCGACTGGGAA 194465 35 100.0 46 ................................... GCCTCCGCTATCTGATTTAGTACTTCACCCCCTGCCGTCAGGACTG 194384 35 100.0 40 ................................... CTTCTGGGCAGATAAGCTTGAGTACGCCATTTTCGATCTT 194309 35 97.1 42 ...............A................... CAGGTGGCGTTTAATGCCCTCCTCCATCGCCTCTCTAGCCTG 194232 35 100.0 39 ................................... GGATCTTGAAAACGATCGCCCACCCGAATGGGTAGCGAA 194158 35 100.0 39 ................................... CTCGCAGCAACAGGTGGGCAACCACTCTGAGCCATCCCA 194084 35 100.0 36 ................................... AATAGCAAAGTTCCCGCTAGACTCTGCTGTGTTTAA 194013 35 100.0 40 ................................... GAATTCGTGAGATTTCCGGTGAAGGTGGCGATCGCCACGA 193938 35 97.1 158 A.................................. CTTGGGAAATCAGAAATCAGAAGGCAGAAGGATGAATGGGATTTGGGTTAGGTATTGAAAGTCTCTTCATTCAGTCAATTACCGCAACACCCTCAACACCCCACCAGCCACCTTTTCATCCTTCTGCCTGCTCCGCACGGGCAAAGCCCTACATCCTT 193745 35 85.7 0 CCCC..........................A.... | A [193730] ========== ====== ====== ====== =================================== ============================================================================================================================================================== ================== 23 35 99.1 46 GATTCATCTCCCATTCCCCGCAAGGGGACGGAAAC # Left flank : GCCGACAATCGCCGCCGCAACAAGCTGGCCAAATTCCTAGAGGGCCAAGGGCGACGGGTGCAAGAGAGCGTCTTTGAATGTTTTGGCACGCTGGATGAAATGCAGCGCCTCCACCGCCAGGTGCTGCACCGCACTCACCCCGATGAAGACAATGTCCGGTTTTATTGGATTCCCGCTGGGGCGATGGCCAAGGCTCTCACCATTGGCAGCGACCCACCGACCCCGCCGCCCCAAGCCTATTTTCTGTAGGGAAGTTCCATGGACTTTTTGGGCTGTGACCCATACACTGGTTAGCAAGTTATGGTGAACACCACACACCTACCCTGCACCTAGAAAACTGCATAGTTACGTTAACCTTCGTGGATCGTTGATTCCGTATGGGTTACAGTCTTTGACAAAGGGCTAAAATTGCCAACAACGGATGTTTGTTGACAGGTCTCTCCCCCCTCTGTGGTTTCAGAGGCTGCAAGCCAGTATCCACAAGGCTTTGAAAATGAGGA # Right flank : GATGGGAAATCAGAAGGCAGAAGGAGGAAGGATGAATGGGATTTGGGTGGAGTGTTGAAAGTCTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCATCCCAATCAGCATCGACAGTATGTCCGCACCTGAGCGGTTAGAAATGTCCCTCGCTAAGGCAGAGTATTTGTTGACCCGTGCCGCTGCACCGGGTCAAGGAGGAGATAAGCAGAACTTCTGGCGCAATATCCTTGCCTTTGACTCAGCCGCAGCTATTCGCAATGCCATCCTCAGAGAAGTCTCAGTGGATATGCTAGAACCCAAAGGCAAGAGCCCCTTTGGAGAGCGCTATCAAGCTCAAATTCGGGTGACGGGTGCCAATGGCCTCTCTCGACCGATCTTGACCGCGTGGATAGTTCGATCAGGAGAGGACACCGCCCGCTTTGTAA # Questionable array : NO Score: 2.69 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.51, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTCATCTCCCATTCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.50,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 1991561-1985956 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI913949.1 Leptolyngbya sp. PCC 6406 LEP6406DRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 1991560 37 100.0 36 ..................................... AATCCGAGTGCTACCGACAAAGGCACCGCGCCCTTG 1991487 37 100.0 35 ..................................... TGGTAAATTTGGTTATCGGTCATCCGTCCTCGTCA 1991415 37 100.0 35 ..................................... AACAGTTGCGGACAGCATGGTGAAATACCCAGAAA 1991343 37 100.0 35 ..................................... TTCACCGCTATGAGCCAGCGGATCATGGCGGTGAC 1991271 37 100.0 34 ..................................... AGCAAGGTTAGCTCCGGCACCTTCGACAAGGTAG 1991200 37 100.0 35 ..................................... AAATCCATCGACGAAGCGGCCAACGGACTCAATAG 1991128 37 100.0 34 ..................................... GAACGCTCCCCCCTAGTACGGGTAGACGGCTACT 1991057 37 100.0 35 ..................................... TCTTCAAGTCCGTCTGGGGGTTTGTTGCTATCCTC 1990985 37 100.0 35 ..................................... GATCAGTACGCCCAGCAGATCGGGAAGCTGGCACC 1990913 37 100.0 35 ..................................... CTGCTGTGATTACTGCCACGGCGGCAAGTGCTGCT 1990841 37 100.0 34 ..................................... TGGCAACATTGACTTTATCGATAGGTCGAGCGAT 1990770 37 100.0 37 ..................................... CTTGGGAAGGAACTTGGCTAACTCGGTGTAGCAAGCG 1990696 37 100.0 34 ..................................... AGCCAAATAGCAAGAGCGGGAAAAATAGAGCCAA 1990625 37 100.0 36 ..................................... TTCGCCATGCGGCTGGCGAAATCCCGCCAGCGCTCG 1990552 37 100.0 34 ..................................... GGTATCGGCATAGAGCACCGTCACGCTGGCCGGA 1990481 37 100.0 33 ..................................... TAACTCACTAGTTAAACTACCAGGAGAGACTAT 1990411 37 100.0 35 ..................................... GAACACTCCCCCCTAGTACGGGTAGACGGCTACTC 1990339 37 100.0 35 ..................................... TTAAAGCTGCTAACCATCGCGGGTGTAGTTGCCTC 1990267 37 100.0 35 ..................................... TCCGGTTTCGCGCTCGGTCTGCACCGGATTGACCC 1990195 37 100.0 35 ..................................... AAGACCTCGGGGGTGTCGGCTCCCTTGGCATTGAG 1990123 37 100.0 34 ..................................... GATCAGGCTATCCACTGCCGATTGCGCCGCCTCG 1990052 37 100.0 34 ..................................... GCGCACCGCCGCTGCCAACGCCCAAGGGATCATG 1989981 37 100.0 35 ..................................... GGCGGGATGGGAGCTTATTTGACCCCAATCTAGGC 1989909 37 100.0 35 ..................................... GGATCGAGGCAGAAGAAATATGCTCACGCCTAATG 1989837 37 100.0 36 ..................................... GGATCATACCCAGGGGGAGTCGGTTCAGTAATAGGC 1989764 37 100.0 37 ..................................... AACACCCATGAATTATCTGTCTGATTCTGAGTGGTAC 1989690 37 97.3 34 ....................................T GGTGGGCCGCCCCGCTGATACCCGCCGATTTTTG 1989619 37 100.0 37 ..................................... TAGCAGGCTTTGGAGGCTTTGGCGGGGATTGGGTACC 1989545 37 100.0 34 ..................................... GAGAAGTATTACTTTCCCGCCGGTGACCCCTTCG 1989474 37 100.0 34 ..................................... AGCTAGGAACCAAGGTTGCCAAGTTTTTTGAACG 1989403 37 100.0 35 ..................................... CTCCCCCCTGGACCCCCCTCTTTCCCCTGTCCGGA 1989331 37 100.0 35 ..................................... TGCGTAGGGGCGGGCAGCGATCAGGCGATCCGCTG 1989259 37 97.3 38 ......C.............................. GGCATCTGCAAAGCAAAGCCACTGGCCAGCCGGAATAG 1989184 37 100.0 36 ..................................... TTCGGAGCTGGAAGCATGAGCCCTGGACAGCTTGCC 1989111 37 100.0 42 ..................................... AATCTGCATACAGGGCCTCTAGGTCGGTGAACAACTCAGCAA 1989032 37 97.3 36 ..............A...................... AGTTTCCAGAGGCCCATTTCGTCGCCTGCATCACCA 1988959 37 94.6 36 ..............A...A.................. TCAAACAGCACCAAAAGCAAATCGGGAGAAGCGTCT 1988886 37 97.3 34 ..............A...................... ATGACGGCACGGGGGGAAGTTCCAATAGAGAATG 1988815 37 97.3 34 ..............A...................... AGCTTATTGAATTTCAGCAAGGAACCGGATATCG 1988744 37 97.3 37 ..............A...................... AGCGAAAATGAATCGGTATCGCCCCAAAGGTTCTAAG 1988670 37 97.3 35 ..............A...................... TGTAAATTCTTGGGCTCTGTCACTACTAGCCTGAA 1988598 37 97.3 34 ..............A...................... CTATTGAGTATTTTGAGGACTTTGTAGATGCTGA 1988527 37 97.3 36 ..............A...................... AATTGCTATGATGGCAGGGTACTAATTCCGTTGTGG 1988454 37 97.3 36 ..............A...................... TACATTGTCCCTACAACTATGGGATTCTGGCGGTGC 1988381 37 97.3 35 ..............A...................... CGGCGGGATTAGATGCTTGCTTTACGATGCTCTGG 1988309 37 97.3 34 ..............A...................... ACATCATGGTCGCTTTCACATAGAGCTGTAGCTG 1988238 37 97.3 35 ..............A...................... GGGGAATTCTGCTTTGAAGTGTTGGGGTTTCCCTG 1988166 37 97.3 37 ..............A...................... GCTGGCTCAGGCGGATCTGGATGCCCAGGGGCTGTCG 1988092 37 97.3 36 ..............A...................... AATACGGGTGGCAGCAGCGCCGATAAGGTGCGGATG 1988019 37 97.3 35 ..............A...................... ACCTCGTTTAATGGCCGCAGCGGCGTGGTATCCCC 1987947 37 97.3 37 ..............A...................... CGGCTCCAGATGTCTGCGCGGAACAAGGACACGGGGG 1987873 37 97.3 34 ..............A...................... GCCTGACACCTGTGGGGACCAAGAGCCTATCTAC 1987802 37 97.3 35 ..............A...................... TCTCTTCCTGCCGATATTGAGCCCAGGCCGCAAGA 1987730 37 97.3 34 ..............A...................... CAGCAGGGCACGGGCTTGGGATGCGGTGAGGGCG 1987659 37 97.3 36 ..............A...................... GAGATCTCACGCCCTGACCCGTGGAATTTCTCCCCC 1987586 37 97.3 36 ..............A...................... TCCACGACCAAGCGCCCCGACATGAAGGAGGTACAG 1987513 37 97.3 36 ..............A...................... CGGGATCGGCGCGGGCGTGGCCACGGGCTATATCTG 1987440 37 97.3 37 ..............A...................... CCGCCAAAGTCAGGGATTAGAGAATAATACTCAGTTG 1987366 37 97.3 35 ..............A...................... GTATATGCCAGTTGGCACCATTTCAAAATGCAGCT 1987294 37 97.3 35 ..............A...................... TACTCATCTAGCGGTTGGTCTGTTGTCTTTTTTAG 1987222 37 97.3 35 ..............A...................... CTGGGGGGGGATTATTTGCGATCGCGCCCCAAATC 1987150 37 100.0 36 ..................................... GTTCTGTACAAAACCCATCAAACCAATGCCAACCAA 1987077 37 100.0 36 ..................................... GGCATCAGAGGGTAAATCCCTTGGGTCTACCGCGCT 1987004 37 100.0 36 ..................................... CCCTCAAGGGCACCCTAGAGGCCCAAGGCTTCAAAG 1986931 37 100.0 35 ..................................... CTGGGTCGATTGCAAAGCCGCCCGGTGCAAGTCCT 1986859 37 100.0 35 ..................................... ACAGGGCAGATTTCGTTTCGGCTGATGGACCATAC 1986787 37 100.0 34 ..................................... CGGTCTTTGTCCCGGCTCCGCTGCCATGGGGGCC 1986716 37 100.0 35 ..................................... TTTGCGGTCGCCGTCGCTGCTGTAAGTCTGGGGGC 1986644 37 97.3 35 ...............C..................... TAAAGGGTGGCCTAGGGACACTCCTAAAAACGATG 1986572 37 100.0 35 ..................................... AGCGACCGGGCTATCTCATACACGTCTTTGCCCTC 1986500 37 100.0 36 ..................................... AGGCTACCAGCCCAGAGGGCGCGGCGATCGTGATAG 1986427 37 100.0 34 ..................................... GGCAACTTCTCCGGCCCTCGCTCCTATCGCCTGG C [1986412] 1986355 37 100.0 34 ..................................... AGAGAAGATACCGCCTGGATGCGGGCTGCAAGAT 1986284 37 100.0 34 ..................................... TTTACAGCTTGGTGGATCAGCTCCCAGCCGCTGG 1986213 37 100.0 37 ..................................... CAGCGGCTCAGACCCAGTTTTTCGGCGGCGGCGGTTG 1986139 37 100.0 37 ..................................... CGCGCTGGCACTCGCACCATGCGCGAGCTAGGCGAAG 1986065 37 100.0 36 ..................................... CTGTTCCACAACGCGACTCGGAGCGTGACGGTGGCC 1985992 37 97.3 0 ....................................T | ========== ====== ====== ====== ===================================== ========================================== ================== 78 37 98.9 35 GCTCCAACCCCCCCCAAACCCTCTCAGGGATTGAAAC # Left flank : TCTCCGAAGACAAACGCCGCACCAAAATCCACACCATTCTTTCCTCCTATGGACAATGGATGCAGTACAGCGTTTTTGAGTGCAGTCTTTCTGCTGCTGAATACACTAAGTTACGCAATCGCCTTAACAAGCTGATTCAGCCGGAAACGGACAGTATCCGCTTCTATTTTCTCTGTGCCTGTTGCCAGGGCAAAATTGAGCGTATCGGTGGGGAGGCGGTTCGGGATGAGACGGTTTTCTTTGCCTAGCGCTGGCGCGGTAGGGGGGGTGTCAGGCTGGAGGCCCTGGGAAAATGCCCCAACCCCCTGTCCTCAAAGGATTTTGGGTGTTTGCCAGATTGGATTGTCCGCGCAAGGGTCAGATGGCTTGGGATGCTTGGCTTTCAGCCTTTTTCGGCCCATGTTCTATCTGGTGTCTGACAGGGTAGAATGGCACAAATGGCGCTATCCGCGCATTTGTACCTTGAAAACCAAATACACCAACCTTTTCCCAGGCCCGCC # Right flank : GCTTTGGGACTGGTATAAGTTGGAGGACGTAGGGCGATCGCGCCCCCTGGCCCAACCTCTACCCAGTCATGCAGACAACTCCCGCAACATCCCTAGAAAGCGTTTATCGCACCCTACAACCCGCCCCCTTAGAGACTGCTGAGGAGCTTCAGGCGTTTTATCAACCCGCCATCAACGAAACCCGAGGCGGTGACAAAATGCAGCGCCTGCGGCTGCGCCTAAACCGGGCCGCAGGAGATGGCATTCCCTTCAAAGCCTGCGTCATGGGTCATCGGGGGGTGGGCAAGTCTACAGAACTCTCTCGCCTCATGGGCCAAGTCAAAGACCAGTTCACCCCCATTCGGTTTAGTGCCACCACAGCACTCGATCCGGGCAACTTTCGGCCCTTAGATGTGGTGCTGTTGATGATGGCAGAAGTCGCCGAACACACCGCTAAACCCATCGCAGCAGGGGGCGCGGGCCACCCCCCCTCAGAGGCACGGCTGCGAGATATTTGGAAC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.99, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTCCAACCCCCCCCAAACCCTCTCAGGGATTGAAAC # Alternate repeat : GCTCCAACCCCCCCAAAACCCTCTCAGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.00,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA // Array 2 2323966-2323760 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI913949.1 Leptolyngbya sp. PCC 6406 LEP6406DRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ============================================== ================== 2323965 38 97.4 46 ..............................A....... GGGATGCGGGGTGGGATGGCCAACGGGATGTTGTGGTCATAATTGG 2323881 38 100.0 46 ...................................... CGAATTTGGTTGGGTTTGGCCAATGGGATGTGGGGGTGAAAATTGC 2323797 38 97.4 0 ....................T................. | ========== ====== ====== ====== ====================================== ============================================== ================== 3 38 98.3 46 TCACCCGCGCACCGGGCACCCACAAGGGGTGCCCCTAC # Left flank : GCCTCAGTTTTGGATCTATGTTCCCGATGGTTACGACCCTGGAATGATCCTGAAGCTTCAGGTGATGCGGAATTATCATCTAGTTGCGGAGCAGGATTTTCCTATGCCCACAGAAGCGGGGCTGATCTCCATAGAACTGGATTATGCTTTGGAGCCCGGTCTCACCTATACCTGGATTGCTGAGGTGATGGTGACTACTGGCCCGGGGCGTTCTGGTAATCCTCGATCTGGGGGCCTGGTGCAGTATCAACCTGTGGAACCTGGGGTTTTGGCGCAAATGGATGGGTTACCTCCATTGGAGAGGGCGCAGCGGTATGGGGAGGAGGGGTTCTGGTATGAGGCGCTGAATGAATTGGCGGTTTTACGCAGGTCTGAGCCTAATAATGCTGAGGTTTTGGCGGCATGGCGTGGGTTGCTGGCGAGTTATGGGTTGGAAATTTTTGCGGAGCAGCCTTTTCTGGATTGTTGCCAGGTGATGGATTGAATTAGCCGCACACAGA # Right flank : GGGATGCGGGGGTGGAGTTGGTCGGTTTCCCAGGATTTGGGGTTGTTGTGAATGTAGGTGCGGATTCTATCTAGGTCGGCAGGGGTCCGAATGATGTGTTCGTAATAGTTGCGTTGCCAGAGCCGTTTTTGAAAAGGGATCCAGTTTTGGTCTTTAACGCCTTTGGTGTACTGGTGGGTGGTTAGGGATTTGAACACGCCCACCACCGTCCCTAATGGCACCCTCGTTTGTGGCCGATCGGTACCCAAACCCGTAGGGACAGGTCTTGTGCCTGCCCTGGTGACAACCGTAGGGGCAGGTCTTGTGCCTGCCCTGGTATCAACGGAGTCCAGATCGGGTCTGGATGATGGCGGATCCATGGGGGCAGGTTCTGTGTTTGTTCCGACAACACCCAGATCCGTAGGGGCAGGTCTTGTGCCTGCCCTGGTCGCAGCGGAGTCCAACCCCTCTGTTAACACCAGAATGCCGTGCATGTGGTTGGGCATAACCACAAACGCATC # Questionable array : NO Score: 2.58 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCACCCGCGCACCGGGCACCCACAAGGGGTGCCCCTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-13.50,-14.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 3 4148818-4151103 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI913949.1 Leptolyngbya sp. PCC 6406 LEP6406DRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 4148818 37 100.0 38 ..................................... GAGCTAAAACCGTCAGTTTGCGCGGGCTTAACCCCGCC 4148893 37 100.0 35 ..................................... CCGATCTCCCGTGCAGTCCTGGCGCACAACCCGCC 4148965 37 100.0 39 ..................................... TTAATCGAAAGGTATCGCCTTGATCACCAGCGTTGTCAA 4149041 37 100.0 37 ..................................... AGAAGTTAAATCCCACGACCCCTACCGGATCCGACAT 4149115 37 100.0 36 ..................................... TACAGTCCCCATTTGGCTTGGGTTCCAGGGTAAAAG 4149188 37 100.0 36 ..................................... CCAATGCATCTAGCTCAAGCCCAAAGTGCTGAAAAG 4149261 37 100.0 34 ..................................... TCATATCCCGAGATCACTACCGCTCCTTGCAACC 4149332 37 100.0 37 ..................................... AACAGAGCGGCAAATGAAAGGCGATGACCCTGACTAC 4149406 37 100.0 35 ..................................... CAGATTTGTTGGTATTGATAGGCAACGGTCAGCAT 4149478 37 100.0 34 ..................................... CCCCCTGATATCCCATGCGCTCCATAGGAATATC 4149549 37 100.0 33 ..................................... TGAACTGCTGTAATCGATGCCCCCTGCTCGATC 4149619 37 100.0 36 ..................................... AGCTTTTGAAGCTAGTTAATGGCTACCTAAAGAACA 4149692 37 100.0 35 ..................................... TGGTAATCGAGAGGGGATATTTATTGACATCAGAT 4149764 37 100.0 40 ..................................... AGAACATGCAACCCCTAGACCATGCCTCTGGGACGCCTAG 4149841 37 100.0 36 ..................................... TGCATAGCGAAGTGACCCATCAGGCCGTTTTCTCTG 4149914 37 100.0 33 ..................................... GCCAATCCCAGGATGGTGGATACCCTCCGCACG 4149984 37 100.0 37 ..................................... GCTCAAGATCTCTGCTGCTTCGGAGGTGGCACCCCAG 4150058 37 100.0 33 ..................................... AAGCGGCGCACATCGCCCCATGAGGAGTGGATT 4150128 37 100.0 33 ..................................... AAAGACTGGCTAGCCTCTACGCCCTATCGGGAT 4150198 37 100.0 35 ..................................... CTGCAATTGCAGAAATCTCTGCCGATGCCCAGCTA 4150270 37 100.0 37 ..................................... CCCGAACAATGGCACCCTGCGGTGGTGTACGCGCCAA 4150344 37 100.0 38 ..................................... CACCGATGGTTGCCCGTGGCACTCCAGAGGGGGTCTAG 4150419 37 100.0 36 ..................................... ACAACGTCATTGCCGTCTCTGATCTGAAAAGACCCA 4150492 37 100.0 34 ..................................... TATCCATTTGCCGTGTAAAATCCCGCGATTATAA 4150563 37 100.0 37 ..................................... TCATCCAACACCGCATAGGTCACGCCAGGGGGTGGGG 4150637 37 100.0 34 ..................................... CGGATGATGAGGATTTGGTTGCGGCGACCATTGC 4150708 37 100.0 35 ..................................... TTTGACGCTATGGACACCGCTGGCGCTGGCATTTG 4150780 37 100.0 36 ..................................... CTAGGGATGCTCCTCTACGTGCTCATCTACATCGTC 4150853 37 100.0 35 ..................................... CGCACAACAACCCGGCAACGATCGCAACGCGGATA 4150925 37 100.0 33 ..................................... GGTCTCTGGGGGAATGCTGCCCGCGCCACAGTT 4150995 37 97.3 35 ......T.............................. TAGCATCAGATAAGCCTCTGTCAGGTCGCTAGTTG 4151067 37 89.2 0 .....A........GG.............G....... | ========== ====== ====== ====== ===================================== ======================================== ================== 32 37 99.6 36 CCAGCGCCCAGCCTCCAGGCTGGGTGAGGATTGGAAC # Left flank : ATTCATTTTGCGCTAATCCATTGGAGCAAAACAGCTATGGATATCCTGGTCACCTATGATGTCAATACTGAAACGAAGGCTGGGCAGCGCCGCCTGCGTAAGGTTGCCACAACCTGCAAAAACTATGGCCAGCGGGTTCAGTGGTCAGTATTTGAATGTCGGGTCAATCAGGCCCAGTATGAGACTCTAAGGGCGACTTTGGTCAGCATTATTGATCCCAAGTTAGACAATCTCCGGTTCTACAAGCTCCCTGGTCCCCGCGAGAAATATTTTGAGCAGTTTGGCATTGATCACTACAGGGATTTTGATGAACCGCTGATCCTCTAGACCATCCGCGAACCCTTAGCACTGCTTCGATCCCTAGGGGGTTCGCGTTCCTTATCTATCAAGCGTTTCAGCAGTTTTTGACGATGATGATGGGTTGTCTGGGTTCTAAAAGTTGGGGGTTCGCGCCAGTAATGGCTAGGATGCGCTCCCAGCAAGGGTTTGGTATACTCGCA # Right flank : CAGTACACCCATGCTCAAAGAAGCGGGGACATTCCCCAGCCCCTTAATCGAACCCTATCCGTTGCGGCGCTTCAGGGCAAGACCTGTACCCGCTGCCACCACCGAACCTAGGATCATCATGGGCTCAGGCACGCTAACCTCAGGCGTATAGTCGCGGGTGTAGAGGGACAGGTGGGATAGGGTAGGTTGCTGTCCGCCTTGATTCGTAATACCGACGGTAGACCAGTTGATGACAGAGATGTCATCCGTTAAATACAGGGTGTAGCTATTGGCAGCCTTGACAGAAAAGGCCCCAGCCCCGGTCAACCCCGTAGACCAGATTCCATCCTTAGTGGTGGTACCCCCCGACAAAAAGGTGCCGAATCCTTCATCAGACTTACCTACCAAACTCCAAGGGCCAGGAGCTGCCAGGGTATTAAGGTTGGTAATGGCGGTTCCTGTGGCACCAGTATCATTGCCGCTAAAGGTACCCAAAAGGGTAGCAGCGGAAGCAGACATGG # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGCGCCCAGCCTCCAGGCTGGGTGAGGATTGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-15.40,-14.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 4 4181277-4180682 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI913949.1 Leptolyngbya sp. PCC 6406 LEP6406DRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 4181276 29 100.0 33 ............................. GATGCCTCTGCCATGGCGGCGTCTAACGCTGCG 4181214 29 100.0 33 ............................. TCTAAAGGGTTAGTTGAATCCTTGAACGAACTC 4181152 29 100.0 35 ............................. GTGATGGCACAAGTGGCCGAGCTGTAGCTGGGTAC 4181088 29 100.0 34 ............................. CAATTCAAGGCATCCCTGGAAGAGAAGTTTGCAC 4181025 29 96.6 34 .....................T....... TCTCCGTCGTGAATGGCTATTCTGCGACATTGGC 4180962 29 100.0 32 ............................. GGACCGTCAATAATCTGCCCCACGATTAGCAA 4180901 29 100.0 35 ............................. TGAATAATCGGGATGCAAGGGCCACAATCTCTTGC 4180837 29 100.0 34 ............................. GACCGACTCAACACCCATAGAGGGATAGGCCGCA 4180774 29 96.6 34 ..............T.............. CTAATGGGAGCCGTTGCTCAACACGATTTTTTTT 4180711 29 89.7 0 ...T...........C.A........... | A [4180689] ========== ====== ====== ====== ============================= =================================== ================== 10 29 98.3 34 GTTGTCCCCACACCCGTGGGGGTGAACCG # Left flank : GCAATGTGCTGGGGTCCTAGGGCACGACGAATGAGCGCCGCAATGGCTGGGGCATCTCCAGCTTTAGCCCGCCCTAACAGGTCAGGTTGAGGCGGCGGGGCTGGAGTGGAGCGGGGATGGGGGGCAGTGGTAACCATGGGATGATTCCCTCCAGGTAAGGGGGCAGGATTGGGAATGGCTTTAGAAGCCTGCCCTTACTCCTCAGTCAAACAAGTCTTGCCCCGATCCGGACATTGACCTTTCCGCCTTTTGAATTGGCACACTCTATTGGCACAGTGCCAGCCGCCAGATCAGGAACGCTGGAAAATTTGGGTCAAGTCCATCTGTTTTGTCTCTACGTTAGAATCCTGCAAGGATTTTGCCGGGTTAGTTAAGTACGCTAGCGACAACAGCTATGGAACTGATGTCATGTCCCGTCAGCTAGAGCGCTTGTTGGCAATTGATGAGCTAATCCGTCAGCCTTTACGGCAAACGGCGTTGAGCCTTGCAGAAGCTGTGGA # Right flank : TTGTAATATACGACTTGGAAGATTGATCGACAGAATTAGGGTTCCAGCCACTGGAATAGGCATTGAACCACTGGATTTCTCGTTCTCAAAACGGCCAACCTTCCAAGTTGTGTTGATAGTAAAGCAATACCACTGCGGGTATGAATAAGCATCTCCGAATCGGCGTTCAGGCTGGTGTATCGTTTGGAATAATTATGACTGTGTTTGGATACTTCCAAACAGGTAGCCTTGCTACAGTTCCCATCTATGCAGCCACCGGCGTATTCTTTGGTGCCATGGTGACATGGTTCAGTTCAAGTGGAGAACGCAGGCTCAAGACCAAAGGAATCACAGCCACTGATCTCAGTCCGATCCAGGTCAGAACAATCGACTATCCCGGCACTCCGCGGGAGGCCGTTGCGTTAACAAAGCAGGCCCTCAGGAAACTCCGAAAGCTGAAGGATGTGACGGAAACATCTAGCCCTCTTTCACTTCAGGCCAAGACTGGCCTCACGTTCGAA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTCCCCACACCCGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTGTCCCCACACGCGTGGGGGTGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //