Array 1 225484-224984 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVNX01000169.1 Lactiplantibacillus pentosus strain IG6 NODE_241_length_466022_cov_82.939240, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 225483 36 100.0 30 .................................... GTCACGACTATGACAACGAAAGACACGCTG 225417 36 100.0 30 .................................... TGATCTATAACCGTTACCAGAGTAGTCAGG 225351 36 100.0 30 .................................... AGGCCTATTCTGCATACATTGACCGATTCA 225285 36 100.0 30 .................................... TCTGGCTTGATCTCATAGTCAAAGTTGCAG 225219 36 97.2 30 ..................................T. AATGCGGTCAGTTTGTTGCCGGAGGTAGTA 225153 36 100.0 30 .................................... TACCAGACAAAAAGCTACAGCAGATTATGA 225087 36 97.2 30 .............................T...... GTGCACGTGGGTCGTCGTCTGCGAACGGCC 225021 36 80.6 0 ................GG.........AC....GTT | AC [224995] ========== ====== ====== ====== ==================================== ============================== ================== 8 36 96.9 30 GTTTCAGAAGGACATTAAATCAATAAGGTCAAGACC # Left flank : TCGAACCATTGAAGTTAATCAATATTTGACTAAGTTGGAACGACTGATTAGTGAGTCGTTAGCCGATGAAGATCGTAATCAGATTCATGATAGTTTGAGTAACTTATATTCAACTGTTCAACAACAACTTTTCTTAACGGACCTACCACTGGAGGTAACTTACGATTTCGATATGAAGCACTTATTGAAATTTGCAAAAATTCATTTCGATGAGAAGTGGCAGACTAATCCTTATGATATAATTGAGTCAGTCCTGAAGGTTCATCAAGAGTGCGGTATTGAATCATGCGTGGTGTTGACCAACGTTGCGCACTATTTGACCGTCTCAGAAATGCAAGAACTTAAAAATAGCGTGGCAATGACCGGACAATCATTGTTACTGCTGGAGTTCTGCGTGATGAATCAACGTGATTATTATGATGTTGGGACATTTAATTATATTGATGAGGACTTTGTTGATTGGTACTGATGAAATGTTAGATTTCGATTAGAAATTAACG # Right flank : AGTCTGCCACGTATGTTGTTACCATCGTTTAAAATATCATTATAGGTCGTTAACTATGTGAGGATTCTGATTTGTCGTAGTCAATTTAAAAAGAATCTGTATTTTGAGAATGAGAGCTCAGCTGTCATACTAAACATGCGAGCTTTTTACCACCGTCCACTAATCCACAATAATCTCCCGCACCCCACAAAACACAACATCCTGCCGATCACCAAACTGCCGCATGACCTCGCCGTGTGTCACGCAAGCGATACAATCATATGTTTGAGCGTACTTGCTCAGAGTTGTGAGCACTCGCGACTTAACTTCAGCGGCTGTCTCATAGTGCAGAGGACTGTCTGCAACTCGTTGGCCGGCATGTTGTCGATAAAGCTGATAGGCCACGCTGGCTTGTTCGTCAGTGTCAGTGCGTGAACCAGTGTTATCAGGTTGCCACTCGCGCAATCCGAGCTTAACTTTTAAAGGAATGTCGTTAAACCGCACGATTTCTAGTGCCGTCT # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGGACATTAAATCAATAAGGTCAAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 462743-462347 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVNX01000114.1 Lactiplantibacillus pentosus strain IG6 NODE_143_length_635864_cov_65.001671, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 462742 29 100.0 32 ............................. ATAAATCGAACTAGTATTAACTTTTGTAACAT 462681 29 100.0 32 ............................. GCGAGTGAATGATGTGAAATTTTTGGGGAACT 462620 29 100.0 33 ............................. CACGGCGTCCGACCTCATTATTGGCTAATTTCA 462558 29 93.1 32 ...C........................T AACTGGTGGACTGACAAATACAAGCTATAAAA 462497 29 96.6 32 .......................A..... ACTAGCTGCCTTAAAGACTACGTTGACTTGGT 462436 29 79.3 32 ...C......C....G..A.A.......T GTTTTACGCCCAAGGAAGTGATGAATCGGTTT 462375 29 69.0 0 .........AC.C..G.AAT.A......A | ========== ====== ====== ====== ============================= ================================= ================== 7 29 91.1 32 GTATTCCCCGTGTATACGGGGGTGATCCC # Left flank : GCTTTCGACTTACTGCCAACCCCACCCATTCAATTATCGATCCTGAGCATCCAAAGGGACGGGTTGTGCCACATGTGACCATTGAACAACAGAAAAAATGGCTAGAAGACCGTGCGACTCGAGCTGGATTTGAGTTGATTCGTCGTAGCAATGTAGAATCTGATACAATTCACAAGTTAGCATTCGATGTTGTAAGCCATGATTGGCCAGTGCTTCACCACCATACAGAAAATAGTGTTCGCATGAGCCGTGTTACGTTTGAAGGACTCTTACGCGTCAAAGACGTAACGGCCCTCAAGCGAACCTTGACGATGGGGATTGGCCGTGAAAGAGCATTTGGTATGGGCTTAATGACGGTTATTCCTGAAGCATAATGATTAGGATAGGCTCGAGTTGGTGAGTCGTGGGTACGATATGATGCTGACTGTGTTAGAAACCAAGTTAACTAAAAACTGCCACGTGGTGTTTTCAGAAAGGCTTAGAGACGGGATTTATTAAGT # Right flank : ATAATACCGTATCCCACACTGATGAGGCCACACATCATAACTGAGGCCGATTTTCACATTTATCACAGCCTAAAAAGCGAGCCCCCAACCAAGGGACTCGCTTTTCTATCACTCATAATACTATTCCGTATGATGTTTCCGAACCGGGCTGACCCAAGTTCCGCTACCGTAACCAAGAATCGTTTTAACGGCTGGGATCAGTGTTGTAACGAGGGCGAGTGCGTTGACTTGCCAGTAGATCAGCATGTATAGCGGCATGAAAATCAAGTATTTGAATTTACGACCGCGGTCATCGACAATCAGGGCTGACAGTAGCTGCAAGACACCAGCAAACATCTCGAAGGTGACGAAGATGAAGGCCATGCAGAACATGTGGTAAACCCGTTCGTAGTTGCCCGTAAAGAAGAAGGTGACCAGTGAAATTAAGAAAATCAGTGTTGAGACAAAGAAGAATAGGGACCAGATAATACTCAAGGTTTGGTCAGTAATGAACGCCCATT # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGTGTATACGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.90,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 472696-473033 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVNX01000114.1 Lactiplantibacillus pentosus strain IG6 NODE_143_length_635864_cov_65.001671, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 472696 29 96.6 32 ............................C TTCTGGGCGGCGCTCGGAGTAGAGGCTGTCTG 472757 29 100.0 32 ............................. CAACAATTTGGAGAAAATTCAAAGCTGGAAAG 472818 29 100.0 32 ............................. ACAGTCGCCGTTAAAACTAGTCTGCCTAATGG GT [472831] 472881 29 100.0 33 ............................. ATTTCGAAGGCTAAGGGCGGTGGCTACGATTTT 472943 29 100.0 32 ............................. TCTGAATGCTCTGCTCGGTTTAGATAAATTTT 473004 29 82.8 0 ..T..T.....A..A.....A........ | T [473029] ========== ====== ====== ====== ============================= ================================= ================== 6 29 96.6 32 CTATTCCCCGTGTATACGGGGGTGATCCT # Left flank : ATTGTAGCAAGAACCCCGAAACCTCAGCTCAAAAAAATCATCCTCATACATCGAGAGAATGATTTTTTCAACGACGATGTTAATTGGGGGCCAGATGCCCCAATCCCTCTTCAAAAATCACCAAAGGAACGTCTGCCCAGGAATAGACATTCCCAAAGTTACTATTCCATCATACTTTCGGAATCACTACACCTTTGCTGGACTGCATTCACTTCAAGTTACACCGCCCAGACACTACAGCCTACCTTAACGAACAACATTATATGGTTGATTAGATGCTATTATTATTTTGCGGCATATGACATCTCACGTGGCGATTATCAAATTTACTATCTAGACACGCCATTTTTCACTCTGTACTTTTACTACTGCGTCCTGATGGTAAACTATTGATTTTATTTGGATCATACCTTATAGTCAAAGCACTAGCCATTTGACAAGTTGACCCTAAACAGTCATTTTCATATTTTAGATTGTTGATTTACCGGCATTTGTTTAGT # Right flank : TAAACTCAATGGTTCCTCAACGACTGCCACGTTCTCCGCACATGTAGTATTCCACCCGATCCAGTGCCATTGTTCAATACCAAATATTTTGTTCAAAAAAAGACCGCCACCCCACAGGATGACGGTCTTTCAACATTAGAGCAACGCCCTAATTAAGTTTTAAATTAAGCAAGTGCCTTTTTAGCAGTGTCAACTAATGCCTTGAATGCATCCGCATCGTTAACGGCTAAGTCAGCTAACATTTTACGGTTAACGTCAACGTTAGCAACCTTTAAACCGTGCATTAATTGGCTGTAGCTGATGTCGTTGATCCGGGCTGCGGCGTTGATCCGGGCAATCCAAAGACGACGGAAGTCACTCTTACGCCGGCGACGATCGCGGAAAGCGTATTGGTATGACTTCATTACTTGGTCCTTAGCAACCTTAAATTGGATGTGCTTAGCACCACGGTAACCTTTAGCTAATTTTAAAATCCGTTTGCGACGTTTGCGTGTTACAGT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCGTGTATACGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.60,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 96367-96883 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVNX01000177.1 Lactiplantibacillus pentosus strain IG6 NODE_276_length_98129_cov_74.200600, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 96367 28 100.0 33 ............................ TGGCAGCATCGTTAGTTGCTCCAATCGGTGAAG 96428 28 100.0 33 ............................ TACACGTTCACTCATATAAACTGCCCCTAACCT 96489 28 100.0 33 ............................ CTATCAACACACTTTTACTCAAATGAGCGAGTA 96550 28 96.4 33 ..........C................. TTAATGGTTGCTAGTCCGGTCGCGGACCGCATG 96611 28 100.0 33 ............................ CCTTCATCCAAGCAGCCACTTGACTGGCGGTAG 96672 28 96.4 33 ..........C................. TTACATCCGTTAAATTCATTCTTACTCACTCCA G [96689] 96734 28 89.3 33 .....T....C......A.......... TCAGCTTTGCGGCACATATGCAACATGTTTACG 96795 28 85.7 33 ...............A..A..A.T.... TGACATTTATTTCATTGCACAAGATTCGAGAAT 96856 28 82.1 0 .....T....C..G...A........T. | ========== ====== ====== ====== ============================ ================================= ================== 9 28 94.4 33 CTGTTCCCCGTGTATGCGGGGGTGATCC # Left flank : TCGCCTGCTACAACAAGTCGGCGCACAAGTTGTGGCCCAGACGGCGATTCTGGCAGAAGGTGCAGCTGGCACACGAACAGACATTGAATTTTTGGCTAAATTGCCACTGTTTGATGGAAATAACTCAGAATAATATAACTAGTAGTAGTGAACCGCGTCGCAGAAACAGATTTAACGGATGATTTTATAGTCATTTTTGGCTTTATCAGTATTGTATGACCATTTAGACCAGTCAATTATAAATTCGTTTATACGGCAATTTTGGGCCGAATTTGAGCGATTCGTTAAATCTTGAGAAGTAATCATTTTTCAATGGCAATGCTAATTCAACTAAAATAATAATCACTTCATACTTTCATGGATGGTATTTTAGACAATTGACCGTCATCGACTAAGGAATCTACTTGCAATGACCTGTCAGTCTGGTATGCTAAACCCAAGTTAATGTAAAAACTCAATTTTACGATTTTGGATTGTTGATTTGACGGGATTTGTTTAGT # Right flank : CTAAGATGGAAAAAGTGCTTCATATCCTATAGTTGTTCCCCGGGCATGGGGGTAATCCCTAAAAGCCCGCGCTATTAACGAAAACATTACCGGCTCTGTTCCGATACTTCATAAAGATTCTATCAACTCCACTTGACGGGGAGCCCGATTACCCCTGGTCGCCTCACCTCTCACAGTCATTCGCAAACTCGGCGCAAGGTAATTTAGAATCCAGAGCAAAAAAACGCCATATCCGAAGATATGACGTTTTTTTAAGTATCGAAAGCTATTCAAGATAGCTTATTGATACCGGCGATCGGGGTCGAACCGATACTCCCTCAACGGGAACTGGATTTTGAGTCCAGCGCGTCTGCCAATTCCGCCACGCCGGCAAAATAAAATGGGTGAAACTTACTGATCAGGATTATAACCTTTTCAGGAAAGGCGGTAACCGGATTTGAACCGGTGATGAAGGTTTTGCAGACCTCTGCCTTACCACTTGGCTATACCGCCATCATTTA # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGTGTATGCGGGGGTGATCC # Alternate repeat : CTGTTCCCCGCGTATGCGGGGGTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.90,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //