Array 1 190224-190910 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTU010000001.1 Nostoc paludosum FACHB-159 contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 190224 37 97.3 35 ..........................C.......... ATCTCTCGCCCTGCATTACCGTTTCTGTCTAACGC 190296 37 100.0 35 ..................................... AATTTGACCGAGAAAGAATTATTGATAGTTTGGGC 190368 37 100.0 36 ..................................... CTTTGCTCCTGCTGGAATTGGAAAATCCAGAGTAAA 190441 37 100.0 35 ..................................... CAGCAGCCGAGATTGGCGCATTGCCACAGCCAAAT 190513 37 100.0 34 ..................................... AGCCGCAGCACAGTGAGTAATATGTGCAATAAAC 190584 37 100.0 39 ..................................... ACGACACGCGCCTAATTCAAGACTACTTAGGGCACATTG 190660 37 100.0 36 ..................................... AATGGTGGTTATGCTGTTACCTCTCAGTGGTCTAAT 190733 37 100.0 34 ..................................... AATGAAACAGCTTGCGAATGCGTGATTTGTAGCA 190804 37 100.0 33 ..................................... ATTCCGCACTGAGCATATTCTCGATCGAGTGAC 190874 37 97.3 0 ...................T................. | ========== ====== ====== ====== ===================================== ======================================= ================== 10 37 99.5 35 ATTGCAATTAACTAAAATCCCTATTAGGGATTGAAAC # Left flank : CTGCACGCTTGGCGACTTAAATTACAGCATCCCATATCTGGAGAAATGATTGAAGTCACAGCAACTCCTCCTAGCCAATTTACCAAACTTTTGGAGATGCTAAAAAAACGAAGCGATCGCACTTAAGTACCCAAGATGTGACCGAAAACCTTATTCTTGTGTAGCGGTAATTCATATAGACGCCCAGCAGCCACTCTGCGAGAACGCTTTGGGCGAACCCGCAGGGTATTACCGTCACTTTCGTTATCTTTTGCCTAAGTCCTGTGCAAAAAAAGCGCGGATGGGTAGGTGTTGGCACGAGACTGAGTACAAAAATGGCTGTATTCTGGTATATGTAAGCATTTGAGAAGTACCCTATTTCTCAACCATCCGCGCACCTTTTCTAGACGGGCTTTCAATCATTTACATATAGCCAAATTACAAACCCTCGTGTTATGATTTTTCAATTCGCGCAACCGAACCTCGAAAACCAAATAGGACAAAGCTTTCAGACGCAAGCG # Right flank : CGCAACATCCTCTAATCTGTACATCTAAACAAACGATTAGCGTGCATCAGACATGGGATAGAGTCTGCTTCACTAGTTAAACCTAAATGAAACTCCTACATAACCCAGGACTAATGCACGCTATCAAATAATCAAACAGATTTACTAGCTAGCGGTTGAGCAAAAATCGTTACTTGATTCCTGCTAGTTGGCGATAAGGTACATCCCTTTCGATATCGATGTTGAATGACGAAACTCTTTGTGGAGCATTGCCAGTTGCATTGATACTCTGTGCCAAAGCCAAGAAATTAGCTGGATCGCCAGCTTTGGGCTTTTGTTCTTGGGGGATGAACCGACGTACTTCTACCTGCCAAATAATTTGGGGGAAGCCCAGTTTAGCGCGGTAGTAATCGTCATATCGTGGAGATTTGATGTTGAAAGGCAACTCACCTTGAGCGCGAGATGGTAAGACTCGACGCCGCTGATAAGGCACTGTAGAGTATCCAAAATTGCTGAGGTAC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTAACTAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 42710-43112 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTU010000052.1 Nostoc paludosum FACHB-159 contig52, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 42710 37 91.9 36 .C..........AC....................... TTGGGAGAATTTCATCAAGTAATTGAGTTTGAAAAT 42783 37 94.6 39 ....T..............T................. TTGTAGGTGCAGAGTAGCTCGTACAGTAGGAAGTTTGCG 42859 37 100.0 38 ..................................... TCGTTATCCCCAGCACTAACTGTAATGATATTAGAATT 42934 37 97.3 34 .............T....................... ATGGCTGATGCTATGCGATCGCACTATCCAGAAC 43005 37 100.0 34 ..................................... AGAGTAAAAGCGGCGATCGTCAAGGCTGCAATCG 43076 37 94.6 0 .............T.....................G. | ========== ====== ====== ====== ===================================== ======================================= ================== 6 37 96.4 36 ATTGCAATTAACCAAAATCCCTATTAGGGATTGAAAC # Left flank : TTGGTGGGGCTTTTATAGATGCTCAGGCAGTTAATGCACAAGAGATACATGGAAACATAACTAACTACACGTCTGACCAAAAGCAAAATCTTGCTGAAGCAGCAGCAGAAATTCAAAAACTTCTCAAACAATTAGAGGAAACCAACCCCACTGCTACTGAGGCTGAGAAAGTTGCTTACGTTAATGACGAAACTACACCTAGTTTCAAGCGCCGTGTTGTTGGCGCATTCCAGGCAGGGGGTGAAACAGCGATTGATGAATTTATTTTAGAAAATAAGTATCTTAAAGTTGCAAAAGCAGTTATTAAAGCTTGGCTACAACCAGGTAGTTAACTGAGTTGGTTGTTATCAACCTTGCTTCTCAACCATCCGCGCACCTTATGGGGTCTGCCTTTCAGGGATTCATATTTAGCCAAATTAGAAACTGTTGTGTTATGATTTACCCATCCGCGCAACCGAACCTCGAAAAACCAAATAAAGTAAAGCTTCCAGCCGCAAGCC # Right flank : CATCAATTTCTAGCTTTTCATCAACCCCCAGTTCTACACCACTTCTACCCACAGGCGACAACATCGCCAAACTCGCAGCCGCACCTAACACCTGCTCGTCTGACACTTCCAAATATCTCTGCAACTGCTCCAAATTCCGATGCCCTGATATCTCCTGAATCACTCTCAACGGTATGCCAGCATTACTCATCTGAGTTAATGCAGTCCTTCTAAAGCTGTGGGTACTCACGCCAATTATCCCGGCTTGTTTGCAAGCTTCTCTCAAAATCCTAGCGGCGCTTGTCTTCGCTGATATGCCCATCGCTACGACCAGGGAACAGATAATCATCGCCGGAGAGCGGGTAATACTCAGCCAACAATCGCCGCAAGTCTTCAATCACTGGTATTGAGCGTGTGTATGCTTCCCTTTAGTGTTCGCCTTCCTGATAATCAGCCGGGGTCTGACCTGCCTTTTGAGTGTGTAAATATCTTGGGTCAACAGAGTGTAGCATTCACGAATA # Questionable array : NO Score: 8.77 # Score Detail : 1:0, 2:3, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTAACCAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : NA // Array 1 257895-257121 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTU010000007.1 Nostoc paludosum FACHB-159 contig7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 257894 36 100.0 38 .................................... GATGCTTCAGTAACAACTTCAGCACCGTTGATTGTAAC 257820 36 100.0 36 .................................... CACTAAAATTCTTAACTAAAGGGTCATGACTATTAA 257748 36 100.0 36 .................................... ACGCTACAGCTAATAGATTCTCTGATTCAGATTCTT 257676 36 100.0 43 .................................... ATTAACCCTCTTGGGTGAGCTTGACTTGTCCAGAGATAGGCTA 257597 36 100.0 39 .................................... AATTCATGAGTTGTCTCCTTAGCGATCGCTTTAATTACA 257522 36 100.0 36 .................................... CTAGCTTGTAAATATGCTTGTTGATAGTCTTCTTCT 257450 36 100.0 39 .................................... GTTGATTTCCAATACCTTGTCCAAGAGAGAAGATAAGTC 257375 36 100.0 39 .................................... TCAAACTTAATACTAAAAGTAGGTAAGGAGGGTGAATAA 257300 36 100.0 37 .................................... TCTAATTGTTTGGGATTCAGAACTAAGATATTCATGG 257227 36 100.0 35 .................................... TCGTCTTGTTCTTGGGTAGCATCTATCCAAAACCC 257156 36 75.0 0 ....T.C....CA.....T..G........TA...T | ========== ====== ====== ====== ==================================== =========================================== ================== 11 36 97.7 38 GTTACAGTTACTCTTACCCCGCAAGGGGATGGAAAC # Left flank : TAAGTTAACGGAGAAGGAACCGAAGCAAGCTGCTTCTCTCCAAGAAGGACAGATGGTGAATGTGAAAATTTTATCTGTTAAGGATGATGGGAGCGTTAAAAGTGTCAAGTTTGTAATTTAACTCAGTATTGATGTTTTAAGTTTTTGATAGGCAAGCCTTGACGAAAATGTGTATGTAAATTATGTTGTTTAAATTGCAAATTTTCTATTAAATCTTACGTGCTTTATTTAGGCTTGATAGAGTACAGAACCTTGAAAAGTAAATAAATATAGTAGTTGCAAGGGTAGGTTTCCATACTACTCTTGAACGGAAAATCTATTGTGCGGCCGATTCGCCAAATGGCTGAAACCCTATTTTTTCGTGGAATCGGCCGCTTGCTTATCCTGTAAGGCTTTCAGAGATTTTTTCTCCATATTTTTCTGACGGGAGAGCGATAAAATTGGTATCGGTCGTAAACCGCCTCTAGAATCCATAGGTACTAAGGGTTTCAAAGCGAGGG # Right flank : AAGTTGGATTAAGCACTGAAGTGCTTACTACGAGATGGAAATTTCAGAAATACAGTAATTTTTGTAGAATGTGATGTGTTTACTGTTGTTCACACCCTTAGTGTTACTGCTCTGAAGGGTGATGCAAGTATTAAAAGTGGGAAATTTATTGATTAATAATGAATTCTTACCACTAACTTCTTCTTAAGCCTAATAGTATATAAAGTAAGGCTATCTTAGCCAGCAATCTTTCTAGGAACAAAACATGAATTCACAAATAACCACATACTTGGGTGAATCACCCCCTCTTCTAGAGTCAAGCTCAACTGAATCAACTTTTCAACCAACATACAGCAGGCAGTTTTTTATAAATAGGCAATTATCACACATGGCAATCGAAGTAGAGTACACAGAAGAGTTCGAGCAGTGGTACTTAACGCTTAATGAAGCAGAGCAAGACTCTATTGATTTTGTAGTAGAGTTGCTTGAAGAAAAAGGTGTGAATCTCCGCTCTCCCTATA # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGTTACTCTTACCCCGCAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 1 15491-13986 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTU010000086.1 Nostoc paludosum FACHB-159 contig86, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 15490 37 100.0 35 ..................................... ATCCCAATCTTCTAGAGAAGAACAAGCAACCATTG 15418 37 100.0 35 ..................................... ATTATTCCACCATTCATATAATTCATGACAGTTAT 15346 37 100.0 37 ..................................... GAGATTTATTGAAATTCAATGGCAATCGTATTCCAGA 15272 37 100.0 41 ..................................... ATGTTACATCAAGGTCAAGTAACATTTCATCTTCTGTAGGA 15194 37 100.0 32 ..................................... TTAAATTATGTCTAACCACCACGATAATCCAC 15125 37 100.0 37 ..................................... AAGCTGATGAGCGGCTAATTATTCTAAAAGCGATTAA 15051 37 100.0 37 ..................................... TTACATAGCAAAAGCCAAGCTCCTCCCTGAACTAGAA 14977 37 100.0 36 ..................................... AACGACGACGCCTCTGCAACATTATCAATTGCTGCA 14904 37 100.0 35 ..................................... TCTTGAGGCTAGGAGCAAGCGAGAAGGGCGTAAAA 14832 37 100.0 37 ..................................... GGTTACAGCGCTGGGTTGTTGTACTGGTTGTTGCTGA 14758 37 100.0 35 ..................................... GCTACAGTCTCTTGGTATCGTTTCAGGTCAGCTAG 14686 37 100.0 38 ..................................... ATCTCAATATAATCAATGGCAATTTAAATGCCAATGGA 14611 37 100.0 35 ..................................... ATTACTGAGGTTTTCAAAAGCTTAGAGAAAACACA 14539 37 100.0 36 ..................................... AAGCTCTGGGATTGGGAAATAAATTAGTAGAAAATC 14466 37 100.0 36 ..................................... AGTAAAAACTTGACGACGTTCTACAACGATTCGCCA 14393 37 100.0 36 ..................................... GAGCAAGTTCTCCTTATGTTTATTTAGGAGCAACAA 14320 37 100.0 35 ..................................... ATTCAATGAAACTTTAGCTACGCTCTACAACCTAA 14248 37 100.0 39 ..................................... CTGGGATTTTTGCACAAAACTCGCACCACATCACAATTC 14172 37 100.0 39 ..................................... TATAATTTATTATTGCGTTCGTAATTACCTTTTCCTTGT 14096 37 100.0 37 ..................................... ATTTTCAATGCAATTCGATTGCACAAATTACCGCGAA 14022 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 21 37 100.0 36 GTTTCCAAACTCAATTACCCCGCGAGGGGACTGAAAC # Left flank : TGGGATGGAGAACTGACAGTTGGGCTGAAGCATCTGAAGTCGTACAATTATTTGCCTGCTGAGTGTGAGCAGGTGCAGGAGATCTGCGATCGCATCAGCGGAGTATATTCTGATTCTCTGGAGGAGACAGTCAAAAGTCTGTTGCACTCGTTGGGGAAGCTGAACCGTCCTTATCTTACGGCAGTGGAAGAGAAGCTGTTAAGTTTGATAGAGAAAGAATACGAAATTACCGATTAAACTCCACAAATCACTCGACAATAGCAAATACTCATAATATCATTGTGTAATCAACTTGATGTTTGTCAAACCGAAGCGGGGTCAAAAACCCTGGGAGGTTTGCCAAAATCACCAGAACCTTGACAAATAAATAATTCTAGCGTTTCAATAATGGAAGCAGTTGCAAATTAGTCGCAATAACAACGGCTGAAATCGACCTATTTTTGAGGTTCGTCAAATTGCTTAAGAGGAAGCTTGCTCTGTAACAGTTTCAGCACCGGGCG # Right flank : ATTGACGAAACAATGATTCAAGGGGCGACAATCGCCTCTAAACCCAGCCAGATAAAAGTTTTGGAGGCACAGACCTTTTGAAAAAATTGGGTGCTTATTGAGAATGAACTGGATGAGGGTAGTAGGCTTTTCTGTGGGGAGCGGTTTTGTGGTAAAAAAGAACGGTCTCGTAATTTGACCAAGACCGTCGTCATAATGCTGGCATCATTCTACCAAAACTTCTTAGGAAAATACCTAAAGAAAGCACAGTTAATCACCCTGAAGATGTTGGTGTGGTTGTTACAAAATCAGAAACAGGTGAAGATAGAAACGCTGGCAGCAACCCTACCTTTACCTATACAGCAAAACAGTCGTAGACGGCATATTCAAAGGTTTTTAACACTGAATGCGAAGAAGTGTAGTGTTGTTGTGGTTCCCTATCATTGAAGCAATAATTACCCAATATTTTAAACTGGGTTCACAATTAACTATAGCGATGGATAGAACACAGTGGAAAGAAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAAACTCAATTACCCCGCGAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 1 212848-211348 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTU010000008.1 Nostoc paludosum FACHB-159 contig8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 212847 37 100.0 35 ..................................... AACATCTACGCCATTTCTCAAAGAGGTGGCATCCA 212775 37 100.0 35 ..................................... AAAATTTTGATTTTATCTAGCGCTTTGAAGGTGAA 212703 37 100.0 34 ..................................... CGCGCGATCGATCGCCATATTCAGACGATGGTGC 212632 37 100.0 33 ..................................... ATCGAAGCGTTCATCGACAAAAGCAGCAATACA 212562 37 100.0 42 ..................................... AGAAAAGCAACCACAAGGTTGGACTCAACTGGAGGATTCAGG 212483 37 100.0 37 ..................................... GAACGATATAGGACAGACGTTGCTAAGTGCAATCGAG 212409 37 100.0 35 ..................................... TTGCGTTCCCCAGCAAGCCACCCCCACAGCAAAGG 212337 37 100.0 32 ..................................... GTATCTTACGTTGAGGACATTCCCATATCCTA 212268 37 100.0 34 ..................................... ATTTTTAGCGCGGGCCATAGCTTTAAACTCCTAA 212197 37 100.0 37 ..................................... TTAGAATTCCCGTTGAACCGTGCTAACCAGTACAAAA 212123 37 100.0 34 ..................................... TTAATTTGTAAATCACTTTCTAGTAAATCTTCTC 212052 37 100.0 36 ..................................... TTTACCTGCAAGCTGTGAGCAAACAGCTTTAACTTC 211979 37 100.0 37 ..................................... GTAAATTCAACGCCTAATTATGCTGAAGGGCGAGAAG 211905 37 100.0 39 ..................................... CTCCATTTTGAATTGTTTGTAAAACGCCACGTTGCTGCG 211829 37 100.0 40 ..................................... CTGCCAACGCACAGATAATGACTGCGGCTCCCGAATTGTT 211752 37 100.0 36 ..................................... AGTTTGAAATTCAATCACCTGATGGAATTGCCCTAA 211679 37 100.0 36 ..................................... GCGGTGGTATAGCATCAGGAGGATTTTGTCAACCAG 211606 37 100.0 40 ..................................... AACCTCAATACTGATAGTATTCCTGAGGTAAATGGAATAT 211529 37 100.0 34 ..................................... CAAATCTCTCATGATTGCCGCCCCGACCGCTGGA 211458 37 100.0 37 ..................................... ACTTTAGTACTTTCTAGGGTAACACCGAAGAAAGTAA 211384 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 21 37 100.0 36 ATTGCAATTAATCAAAATCCCTATTAGGGATTGAAAC # Left flank : CTCAAACGCTTCCCTAGGGTCGATTCAGACTTTTCGGGAGAATTAGCTGGTGAACCCGTACTCATAATAGTATTATTACAACTTATTAAGTAGTCTCTTTCACTCTAGCAATTTACACGAGTCGGGAGTAGTAAATTACTAAGATCAAACTACCCCATCAGAAATCCTGCATTTTTTACATTTCGCCTCTGTGGCGGGCAAAATCCTTGTTATCTAATAATCAAACTGCATATTTTGTCAACAGCGCCACTAATCAAACTAGTTTTTACCAAATGCGCGGATGGGTAGGTGTTGGCCAGAGGATGGTTACAAAAATGCCTGTATTGCCTTATATGTAAGCACTTGACGATTCGAGTACCAGTAAACCTACCGCGCACCTTATCTAGACTGGCTTTCAGCGATTTACATCTAGCCAAATTACAAACCGTCGTGTTATGATTCTTGCATTCGCGCAACCGAACCTTGAAAACCAAATAATACAAAGCTTTCAAATGCCAGCC # Right flank : TAAGACTAACTTACAACATTTCATTATTCATAGCGAATTCTCTGCGTCCCTTTGCGCTTACCACTGCGCTCCTTTGCGTTTAAATTTCAACCGTCAATTCGCCACGATTTTACGCAAAGCTGTACTTAGGTATCTCAGCCATTTAGCTTTCATTGCAATTAACCAGCCTATCCCCGACTTATCAAACAAGTCGGGGATAGCACTTAACTTACAAAATCACTCCAGTTTCTTTCAAATAAACTCGTGTAAATGGTTCATCTTGCCCCAAAGTGTAGTCCTCAATTAACCCTTTGCGACGAATAGAAATGTCGTTGCCTTTTCTAATCACCACAGTAGAACCGTCAAAAACATCCCGCGCCAATATCATCTCAGTTTCGGTGGGATTATCCAAAACTACGAGATTACTACGTTGGTAAAACATACCCTCTTGCTCTAATATGTCTTCCCCATACTCAGCAATCAACACATCAAGTTTGGGATGACGCAGCAAAGTTTGAACA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTAATCAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 10728-9747 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTU010000016.1 Nostoc paludosum FACHB-159 contig16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 10727 37 100.0 40 ..................................... ATATTCAAGCTCAATTCCGAATTCTGTGCCTGCTGGCAAT 10650 37 100.0 33 ..................................... ATATTAGCAAGTATTTGAATCAACGGCTCAGAC 10580 37 100.0 35 ..................................... AATACTATTTGGGATGATGTAGCAGGCTACGCGGG 10508 37 100.0 37 ..................................... CAATCTTGCGAAAAACGTCTTTCACGGAAAAAATTAG 10434 37 100.0 34 ..................................... CTCTTTCAATTCCATCAGGCTCACTTTTACTGAG 10363 37 100.0 34 ..................................... TGCGATAATAATTTTAATGATGACTTTCCTCCAC 10292 37 100.0 38 ..................................... GCATCTACTCTGGAGCATGAACAAGGATATCAGTCCGA 10217 37 100.0 38 ..................................... AAAAAGTTCATCCCCATCGGCAGGGTCAGTGTTGCCAT 10142 37 100.0 33 ..................................... CGGATAAATCATCTTCTGAGATATCGCCATTGA 10072 37 100.0 35 ..................................... TTATTGGGCGATGGCTTCAGTAATTGCAGCGATCG 10000 37 100.0 36 ..................................... GAGCGAAGGTTTTTAAGCGATCGGCAAAAGTAGTCC 9927 37 100.0 36 ..................................... ATAGATATCCCTGCTGGTACTGTGAAATCCTTAAAG 9854 37 100.0 34 ..................................... CTGAAGCGGAGCCTACCCCAAAAGAGCCTCCGCA 9783 37 94.6 0 ................................A...G | ========== ====== ====== ====== ===================================== ======================================== ================== 14 37 99.6 36 GTTGAAATTTCATTTACTCCCTATTAGGGATTGAAAC # Left flank : AATGAATGTTGTTGTATCTTATGATATTTCAGAAGATAAACGTCGCACTAAAATTCATAAAGTTCTCAAGTCCTATGGACAATGGGTACAGTACAGTGTATTTGAATGCCATCTGACCGATACTCAGTATGCAAAATTGCGATCGCGCTTGAACAAGTTAATCAAGCCTGAAACAGATAGTATCCTATTTTACTTTTTATGTGCCTGCTGTCTAAGTAAAGTAGAACGTATTGGTGGGGAAAAAATTCGTGATGACTCTATTTTCTTTGCTGAATGCGCGGATGGGTAGGTGTTCAAAACCAAATTGCGGGAAGTAACCTTGAAACCCTCCTGCTGCAATAGTTTTGGAGAAAATAGCTAAGAAAGTACCCGCGCACCTTACACAGACTACGTTCTAGCTATTTTCCTAAAATTCAATGTCAATTCTACATGCTATGATTATCTCGTTCGCGCTACCGAACCTTGAAAACCCAATACAAACTGTATTTCAGGCTACCGCT # Right flank : TTATTCCACAATCAAATAAAAATCATCACATTCAGCAATGAAACACCAATATCCAGCATCCAAAATCCGAAGCTGACTATGGTGTTAGGAACTTTTTTTTTAAAGAGTTACCTCCTTTAACATCCAGCACTTGTGCTAATTCAGTTGGATTCAATGACTTAACGAGACTCAAACCAAGAGACTTACTAGAAATGCTTTGAGTGTAGCTAGCATTGAGATAACGAACGTATTGTGGCTTTCCTGCAACATAAGTTTGGAAGAAAGGCAAACTTAAAACATTCATGTAACGACGCGCTTGGGAAGCATCGCCAATCATTTCAGCAGGTAATGATAATTGTTGATTTGTCGGATTAGCGTTACCAATGGTGGAAAAGTGAGTGGCACCTGCAAGCATGACAAGATACTTTTGTGGATTTGCCAGCCACGAGAAAGGTAGAATTTGCTCGTATAAAGCCGGTGCAACAGTGTCATCGCTACTGCTGACAATCATCACTGGAGTT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCATTTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 1 138259-139692 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTU010000021.1 Nostoc paludosum FACHB-159 contig21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================================== ================== 138259 37 100.0 34 ..................................... AGAAAAAACCTGGGCAGTGAGCGGAGTTGTTGGT 138330 37 100.0 36 ..................................... GGGACGATTGATTGCAGGACAACCAGTACAACAAGC 138403 37 100.0 33 ..................................... TTGTCTTTCCTTACCCTAACTTTGCCGACTTTG 138473 37 100.0 36 ..................................... TTTCGCAAGATTGGACCGATTGATAAACCAAAGGGA 138546 37 100.0 37 ..................................... ATTCTTCAAGGCGTCGATAATAGCGTATACTTCGGAT 138620 37 100.0 33 ..................................... GTCGAGTTCATCGCGTAAAGATGCACCCGTGTG 138690 37 100.0 35 ..................................... GATCGCACTTCGCGTCAGTCCCGTGTCGGCAGGGT 138762 37 100.0 37 ..................................... GCTCCAAGCAGAAGCAGTACCTACACCATCAAGAGTG 138836 37 100.0 53 ..................................... TGGTAAAAAACCTGTGGCGATCGCCGCCTTGATTTCCTCAACGGTAAAATCAG 138926 37 100.0 37 ..................................... TAACCATGCCAGCAGATGGCAATGTAGTAGATCCTGA 139000 37 100.0 36 ..................................... CTGATAAAATTTGGCAAGGTGAAGTGATAGGTATGA 139073 37 100.0 35 ..................................... AAACACTCCTTCCACAGCTTCCCATGAACCTCTTT 139145 37 100.0 35 ..................................... GACGGTAGCCCGCGAGAATACATCAATTTTCGGGC 139217 37 100.0 36 ..................................... AATGATGCCAAGCTTTTTGAAGTGGTGATGGATGGG 139290 37 100.0 34 ..................................... CATAAATATCGCCTTCTTGGTAAAAATTCACCTG 139361 37 100.0 33 ..................................... TGGGATATTAAAATCAGAGGGGTATCTAATTGT 139431 37 100.0 36 ..................................... GCCAAATCTTGCATTGCTTCAAAGAACCATGTATCA 139504 37 100.0 36 ..................................... CAGCCGCTTGGAGAGAAGCTTATGCCCAGTTCAAAG 139577 37 100.0 41 ..................................... ACTCAAATGCTAGTGACTGGCACTGGCTACCTGCGACTCTA 139655 37 91.9 0 ..........................AA.....C... | T [139678] ========== ====== ====== ====== ===================================== ===================================================== ================== 20 37 99.6 37 ATTGCAATTAACTAAAATCCCTATTAGGGATTGAAAC # Left flank : GTTTTCATTTTGCTCAAGTTGCACGTATCAGACTCACAAGTTCTGAGATTTTAGCCAGTTTACGTCATCCAACAGGCTTTGTTCGAGAAGCAGCGATCGCATACTTGAATATGGTTTCACAGCGCGTCCTCTTCCAAATCCTACCCCAACTGCAAAACGATCCACACCCTCTAGTAGCCGCCCAAGTTAAGGAATTGCTCGAAAAATACCAATTCAAAAATTACAAGAAGTAGTGCCAAGTCTACATCCAATCAGACTAATCTCTTTGCTGAGTGCGCGGATGGGTAGGTGTTTATGAACAGCTAACTACCAAAATGGCTAAATTGCCCTCTATGTAAGAATTTGACGCCAATAGTATGTCTCAACCATCCGCGCACCTTATCCAGCCTAGCTTTCAGCGATTTGCATCTAGTAAAATTACAAATTTTTGTGTTATGATTACCCCATCCGCGCAACAGAACCTTGAAAACTAAATATCACAGCGCTTTTAGACGCCCGCT # Right flank : CGATCGCACTAAGCAACTGGCGATCGCCATCCAGAGCAACTGGATTTGCTCTAGGGGAATCAATAAGTGCAAAGATACAGCCAACCACTTTTCAAACAACCTCTTAGACCTTCATTCCTTGTTAGCCTAGAGACTAAAGTACAAACTCCAAGAGCATTAGGAATATTCATGTACGTATTAATTGGTGGAGCAGGTTTAGTGGGGCTAAGTTTAGCGCAGAAGCTGGTAGAGTTGGGGCATACTGTTGCGGTTATCGATATTGACCCTACCGCTTGTCGTTATGCCCGCGAACAAGTTGGGGCAATGGCTTTTGAAGGAAGTGCTGTGAGTACAGAAGTATTGTTAGAAGCTGGGATTCGCAAAGCCAGCTCTTTGGCTGCTGTGCTACGCAGTGATGCCTTAAACTTGGCAATGGTAACTCTTGCTAAACATTATGGCGTTCCTCATATTTTAAGTCGGATGCGTCACCCCGATTTTGCTGAACCCCTACGTCTGGCGGG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTAACTAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 18184-19254 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTU010000024.1 Nostoc paludosum FACHB-159 contig24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================================= ================== 18184 37 100.0 55 ..................................... CCGAAAATAAAGCTGTTGACACGTGAGCAAAGCTACAAACATCAGTATTACAGGC 18276 37 94.6 36 .G.A................................. CCGAAAATAAAGCTGTTGACACAAACGGTAGATTTA 18349 37 100.0 34 ..................................... TACCTGCGCCCCAACACGTAATTCCCACTCGCGC 18420 37 100.0 34 ..................................... GAGATTCGCTCAATTCGTAACATTCCCGCTGAGA 18491 37 100.0 33 ..................................... TGACTAGTGATAGGGCTGGTGATAATGGTATCA 18561 37 100.0 35 ..................................... CTCTTCGGCTAACTCTTCCTCTATTTCCCAATCAG 18633 37 100.0 39 ..................................... GTCTCTACTTAGTTCCCCTTTATTTACCCTACGGTTTAC 18709 37 100.0 36 ..................................... AACTGCCCCACAAGCAAAGCTAATGCTGATGGGAAT 18782 37 100.0 34 ..................................... TACTTGCAAGGTCTGTGACTCCGAAAGGGCTAAG 18853 37 100.0 35 ..................................... AGTGGCGACTTTAGCTCCCGCCTTGATTAATTCAG 18925 37 100.0 35 ..................................... ACAGGGAAAAGCAACAAAATCTTGGTTACGTTGAT 18997 37 100.0 34 ..................................... AAAAAATAAATGTAGGCAAGGCGCTGAAGCTAGG 19068 37 100.0 41 ..................................... TCGGCGTGCTTGCCCTCTAAAATCACCACCTTATCTCCCAC 19146 37 100.0 35 ..................................... AGCTGAGAATAAGAATCAAACTTTTGTATTTAAAT 19218 37 97.3 0 ....................................T | ========== ====== ====== ====== ===================================== ======================================================= ================== 15 37 99.5 37 ATTGCAATTAACTAAACTCCCTATTAGGGATTGAAAC # Left flank : TACCTTGGACAGCAACTCAGGCACTTAATAACAGTACATTACCTTATGTTGTCCAGTTAGCGAATTTGGGAATTAAGGCATTGGAAGTTAACCCAGCCTTAGCTAAAGGTGTGAATGTGCAGAATCATAAATTAGTGCATCATGCTGTGCAAGAGGTTTTTCCTGATTTGGTAAGTTAGACCTTGCACAGGCGAGGGTTAGAAGCTGTGCAAGCGGTAGGCGATCGCCTATCCTAATGGTGGTAATCTTCATCAATTAGACTAATTTCGTTACCAAATGCGCGGATGGGCAGCTGTAGAAAATCAAACGAAGCAAAAAATGGCTGCATCTTAATGTGTACAAGGTTTTGAGGACTATACGACTTGTGAACCATCCGCGCACCTTATGGAGACTGAGTTTCAGGGATTTGCATCTGGTCTTATTACTATCTCCTGTGTTATGATTTTCTCATTCGCGCTACTGCACCTTGAAAACCAAATACAGCAAGCCTTTCAGATGCC # Right flank : TACAATAGTATTCAAAGAATGCAACCAACGACTTAACATCCTTTCAGACATCTTGTTTTGATACCAAGTTTGACATCCCGTCTTTTGACACATACAGCAGTTTGCAACTAAATGAGGTACAGAATCAAGGATTCAGAAATCAAATTATTCTTCTCCCTCCTGCCTCCTGCCTTCTGCCTCATGCCTCAAAACCAGTGACTTTGTACCTCATACAAAACAAAACTGCTGTATCACTAGTTCACTCAGAATGTAAAAAAGTTTCCCTACCTATAGAGAGATGTTTTTATTGAATAAAGTTGACTCAAAAAATACAGATAAATAGTGTCGATCGCTCACCATGAAAATCAAGCTTTTGAAAATAGCGTAGGCGTTCCCGTAGCGTTCTGTAGAAAAGCCCGTCGCAGACATTGGCACTACAGCAACGCAAAAATAAAATTCAAAAATACATATAATGCAAACTTTTGAACCATTCCCAATGGTAGATTTATTTCCACTATGAT # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTAACTAAACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [2-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 1 84548-83220 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTU010000029.1 Nostoc paludosum FACHB-159 contig29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 84547 37 100.0 32 ..................................... ATTGTAAATTGCTGACTAACCGCGGGAACGAC 84478 37 100.0 42 ..................................... CCACTGCCAAGTTTCAGCGCTCCCGCTTTTGGCAAATAGCGT 84399 37 100.0 35 ..................................... TGGCTCACCATCATTACCTGTGTAGACAAAACCAA 84327 37 100.0 34 ..................................... CACAGGGTGATAATTGCGCTCGATATCGTGTTAA 84256 37 100.0 34 ..................................... TGACACAGACTGTATACAACGGTGTAATATCAGG 84185 37 100.0 40 ..................................... GTATGCGGCAGGATTGCCGTAATCCACACCTCCATCCGAT 84108 37 100.0 32 ..................................... GGCGTGAGCCTTGGCGCTGCACAGGGTTGGCT 84039 37 100.0 31 ..................................... CGCTTGCGTAAAGTTTCTGACATCGGATATA 83971 37 100.0 34 ..................................... AGCGGTGATTCATTGATTCCGCCTGTCGCTTGAT 83900 37 100.0 34 ..................................... GGGTCACTAAGCCGGAGCTTCTCACTACCAGGCA 83829 37 100.0 34 ..................................... ATTGATCGGAAAGTAACGACTTTCTACAGTTTTC 83758 37 100.0 42 ..................................... AGTCCTTGCACCGATACTTTACCAGAGTGAGTAAATGCCCAT 83679 37 100.0 32 ..................................... ATTTCTAAACCAGTTGGGGTATTAGAAAATAA 83610 37 100.0 34 ..................................... ATTCTTCGCGATCGCCATAACTATTGAGTGTGAA 83539 37 100.0 34 ..................................... GAGTCGGTGAAGACACTTCCGAAATTACATAAAA 83468 37 100.0 35 ..................................... GGTTGGCGTTTCCCCTAGCAGGTCTTTCTATTGCT 83396 37 100.0 33 ..................................... ATCGTCTCTCTTTACTCGTGCCATAATATCTCC 83326 37 100.0 33 ..................................... GGGGAATATATACGACGATCGGCAGAGTATACG 83256 37 89.2 0 .................................TTTT | ========== ====== ====== ====== ===================================== ========================================== ================== 19 37 99.4 35 GTTGAAATTTCACTTACTCCCTATTAGGGATTGAAAC # Left flank : GGCAACAGGCAAGAAGAACGGGGCGATGCAACAAAGGTGCAAGGCGATGCAACAAAGGTGCAAGGCGATGCAACAAAGGTGCAGGGCAATGCAACAAAGGTGCAAGGCGATGCAACAAAGGTGCAAGGCAATGCAACAAAGGTGCAAGGCGATGCAACAAAGGTGCAGGTCAAGAGACTTGTGTGTACACCGTAGCCTTGCTAAGAGGTTGTTTGAAAAGTGGTTGGTTATGATTTTAGGCACTTTATCGATCCCCCCTAAGCTTCTTACCGAATGCGCGGATGGGTAGGTGTCCAAAACAAAATATGGGGGAGAAGGTTTCAAATTCGCTTAGTATAAGAGTTTTGGCGCAAATAGTTGCTCAGGTATCCGCGCCCTTTACACAGGCTAGGTTTTAGCTATTTTTTTACTACTCAATCTCAATTCTTCATGATATGATTGCCTCATCCGCGCATCAGAACCTTGAAAATCAAATAAAAACAGCGTTTCGGACTTCTACG # Right flank : GGTAAACAACTAAGTAACGCAAGCTCTGAACATTTTCACGCCTCGCCTTACTGCGATCTCTCTATCGGCCAATACCCTTATTTCTCAATCAAAGCTATACTACCATCGTAAATTGCCAAGATTTTGAGGTAGCAGCAGATGATTGATCTCTACACCTTTACCACGCCCAATGGACGCAAAGTTTCCGTGATGCTTGAAGAGGTCGAATTGCCTTATAATGTCCACAAAATTGACATTACTACTCAACAGCAATTTACACCTGAATATATTGCCATCAATCCCAATAGTAAAATTCCCGCCATTGTTGACCAAGAGACTGGGATTACAGTTTTTGAATCGGGCGCAATTCTAATTTACTTAGCCGAAAAAACAGGTTGTCTGTTACCTACTGACCAAAAAAGCCGTTTTCAAGTTCTAGAGTGGCTGATGTTCCAAATGGCAGGAGTCGGGCCAATGTTTGGACAACTTAACCACTTTAAACGCTTTGCACCCGAAAAAAT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCACTTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 65114-63324 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTU010000031.1 Nostoc paludosum FACHB-159 contig31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 65113 37 100.0 39 ..................................... ACCTTCCCAATATTTAAATTATTCTGTTTATTCACCCAA 65037 37 100.0 37 ..................................... TGGCGATGGATCTGGATGGGAGGAATATGGGTGGCAG 64963 37 100.0 36 ..................................... ACTTAGATAAGTTAACTAAATAATCATATACTTTAT 64890 37 100.0 35 ..................................... CAATACTGCGGCGAACTGCTGATATAAGGCAGCAA 64818 37 100.0 36 ..................................... AAGAATAAAAGTTGTTACCAAGTTTAGAAAGTGCGA 64745 37 100.0 34 ..................................... CGATACCTAATGGAGAAAGAAAAACTAACTTGAC 64674 37 100.0 42 ..................................... ATGTTTTCACAAGCTGACTCAATGCCCAATTCGGAGACAAAG 64595 37 100.0 33 ..................................... TCCAGTTAGTAATATCTTCACGGGAGATTATGA 64525 37 100.0 34 ..................................... TAAAGTCATCACTTACCCCCGCAGCACGGGCACG 64454 37 100.0 37 ..................................... ATGAAAGATCCACTAGATTTCATAGAGTTGACCCTGA 64380 37 100.0 36 ..................................... TTGTTGAAGATGCAGTTACACAAGCAACTATTACAA 64307 37 100.0 34 ..................................... TAGAAAGTTCCACATCTCTAAATGTTTTTGTTTG 64236 37 100.0 37 ..................................... CTGCGAATCCAAGCGACAAGGCAGAAAGCAATCAGTC 64162 37 100.0 35 ..................................... AAGAAAAAATTAACCAATTGGCGGGATTAAAACAA 64090 37 100.0 34 ..................................... TACGTAAATTCAACTCTTCCCTCTCCATTAAGTG 64019 37 100.0 42 ..................................... CTTTTTCTGCTGGTACAAATTTTATTACTCAGACTACTACAT 63940 37 100.0 35 ..................................... TTATCGGAAGAGGGGTCTTCCAACCACTTGTATAA 63868 37 100.0 35 ..................................... TTTCTTGGTTACTTCGTATTGGCGTTGATTTTGAA 63796 37 100.0 35 ..................................... ATTGACCCAATCCTGACGAGAGAAATCCAACTTGG 63724 37 100.0 35 ..................................... GGTTTAAACATGACTAAAACAGTGGAACTACCGAA 63652 37 100.0 36 ..................................... CGCTGCGCTTTGATTTAGCTCGCGTCCCATCTGGGA 63579 37 100.0 35 ..................................... ATGACACCGCTGTTGTAGTTCCTGCTACTACAACA 63507 37 100.0 35 ..................................... CTTACATCAGCTTTTTTTATTCAGATAATAGCAAA 63435 37 100.0 38 ..................................... GATTACGGCTTCCTTATTATTGAAACTAACGACCGCAA 63360 37 86.5 0 ................................TCTGT | ========== ====== ====== ====== ===================================== ========================================== ================== 25 37 99.5 36 GTTTCACATTAATGATTTCTGCTTGCGGGATTGAAAC # Left flank : AAAGGCTCAAATATAAACGTATTAAAAGATTTAAACACAGAGACAAAAGCAAAAAAAATGTTGACAAATTTAATCAAAAGATGTAGAGTGAATTTATACAGTACCGCAGTTTGATGGCGGAAAAATTTCAGTTTTAATACTGATAAAGATGACTCGAAGGGAAACCAAAGAGTAAGGTTAAGAGGCGACTCTTACCATAGACAAGCCGGAATTATGGCTTGCAGTTCTTCAATTTAGAAATCATTAATTCTGTTTTTGCAGTAAGTCTGTACCTTGAAAATTGAAAATTTTTGAGTATCTTCAAAAATTTTGGCAAGAGAAAGCACGGGCAAAAACCCCCTAGTTCCCGCCAAAAATCTATAACCCTTGTGGTTCAAGGAATATAGCTTATAAAGCTCGACTGGTTTATCGATTACTCCGTGGCTGAAATGAACTTTTCTACCTCCCCTGCCAAAAATAGTTATACAAAGCTAGATTGTTAAGGGTTTAAGCTTTTTGGG # Right flank : TAATGGTTGTTGTGGTTCTGTAATTTTACTTTCAATAAATTCTAAGTCTAGTATGATTTCTGTTCCATCTGGAATATTATGAAGTTGTTCTAATATTTCAATATTTTGACCACGTTTGATACCTCTAACCTTCATATTTAATTATCTTTTATAATTATTAGTTTACTGATGATTGATAATGGTTGGTAAAAAAAAAGCCACAATGTAGATTTTTTAAGATTCAATAATTAATTCAGAAACTTTATCCAGTAACTTCTGCTGACAAGCATCAAACCATTCTTGAATCAATTTATCTTTACCATTTGGAACTTCATAAAACCTGAAAGACATACCACTACTTCTAGATATTCTGACAACTCCTGACAGGTCTAATGTTTCCTGATTGATTTTAGCGGATATTTCTAATGGTATAGATACAGATTCGAGTTCTTTTTTAGATGGGAGTTCTGATGGAATTCCTCTGCTTTCTGCTGTTTTTTTCGCCAGTTCTAAATCTTTCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCACATTAATGATTTCTGCTTGCGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 2 79603-82470 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTU010000031.1 Nostoc paludosum FACHB-159 contig31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 79603 37 100.0 38 ..................................... ATTACGAGCATTCTTTTCTCTTTCTAAGAGATTTATAG 79678 37 100.0 36 ..................................... TATCTTTATGTCCAAACTCTTCAGTCAGATCGTTGA 79751 37 100.0 36 ..................................... ATTTCCATGCTTGCTATTTAGAAAAGGCTTCCTTGT 79824 37 100.0 36 ..................................... TGGCATCGCGGACAACATCGCCGCCAAATAAGACTA 79897 37 100.0 39 ..................................... CATATAGCTTATTAGTTCAATCTGTGCCTTTATATAGAA 79973 37 100.0 35 ..................................... ACACAGTAGACTTATTCAAGTATTTAGCTAATAAC 80045 37 100.0 37 ..................................... CAATACTGCGGCGAACTGCTGATATAAGGCAGCAAAA 80119 37 100.0 34 ..................................... CAGTCGGAAATATTGGGGCGATGCGGTTTGCTTG 80190 37 100.0 34 ..................................... TTCAGTTTGCGATCGCACTGAATCCATAATTTAA 80261 37 100.0 35 ..................................... ACTTGTGTTTCGATATTGATTAATACTCTAGTTAG 80333 37 100.0 35 ..................................... TTAGATTATCTTGATGTTAACGGCTTCAAGCCTGA 80405 37 100.0 37 ..................................... GGTAAATGGGGAGTTTTTAACTCCCCATTTTCTTAAG 80479 37 100.0 36 ..................................... TCGCTTTGGAAGTATATCAAAACCAATCTGGCTGTG 80552 37 100.0 33 ..................................... TTTTTATAAGCTCAGCTTTACTAAGTTCTAATA 80622 37 100.0 33 ..................................... TACTTTGACTAGCTTTTCTTCTCCTACTGTTAG 80692 37 100.0 34 ..................................... TTTCCGCGCCGGGGAACTTAGCCAAGTGGCGTGG 80763 37 100.0 34 ..................................... CTTTTATTTTAGCTTTAGGCGGAAACTGTGTTTG 80834 37 100.0 36 ..................................... GGGTAAATGCTACTGGTGCGATCGCCGCAGCATTGG 80907 37 100.0 34 ..................................... AAGAACAAAGGGTCATATTAAACGACGCTGTTCG 80978 37 100.0 33 ..................................... CTGGAAGCTTGATTGGCTTGTTCCTAGCTTTAA 81048 37 100.0 34 ..................................... TACCAATCCATCTGTGCAACTACTTAGGGGTCGG 81119 37 100.0 38 ..................................... AAACAAAGAGAAGCTTCAGCATTTATTAAATACTAAAT 81194 37 100.0 37 ..................................... AATGCAATGAAAATATCTATTTTTCTTACTCTCTTAT 81268 37 100.0 35 ..................................... TTGAGATAATTTAATATCACCTAATAGTTTTCTTA 81340 37 100.0 37 ..................................... CTTTGGAGTTCGTCAATGAAAGGGAAAGCAATACTTG 81414 37 100.0 37 ..................................... CACCAGCAGTAGGCTTAGTAGGTCTGTAGCAGACTAC 81488 37 100.0 37 ..................................... AAGAAGTTAAATCTATTGACGCTATAGAGCGCAAAGA 81562 37 100.0 36 ..................................... ATGGTTGAACATGAGTAAAATAATCAACCGTGTAAG 81635 37 100.0 33 ..................................... GTTGATTTGAGTACCAAAGCAAAAGAACTTCAC 81705 37 100.0 35 ..................................... TAGTAAGTTCGGTCTTGAAATACAAACAAAGGATT 81777 37 100.0 38 ..................................... ATCGCTTTTAGTACTGAATATTGAATGGCGATCGCCCG 81852 37 100.0 35 ..................................... TAATATCTACCAGAAATATAGCCAGGCACACTCAG 81924 37 100.0 36 ..................................... ATCCAGAATGAATACGTATTCATCCAACTCCCAACT 81997 37 100.0 36 ..................................... TATTGTTTTCCAGATTCTAGTTTCATCGCTTCTAGT 82070 37 100.0 37 ..................................... GGATCGACAAAATAAGAAATACACTTTGGCATCTCAG 82144 37 100.0 35 ..................................... ACTTGGTTTTATGTCGGATGACTGCCCCATTAATT 82216 37 100.0 34 ..................................... AAACCTAGCTAGTACAAATTTACTCTACTGAAAA 82287 37 100.0 36 ..................................... AAATCTCAGACGAATATCTCAAGCCCCGTGATATTG 82360 37 100.0 37 ..................................... CTGGAAATATGGCGACACTCAATATTGGAATTCCCAA 82434 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 40 37 100.0 36 CTTTCAAATAAATGAAACCCGTTCGCGGGATTGAAAC # Left flank : CTTTGTTCTACCTCATAATTTATGATTTGCCTGATAATAAAAAGGCAAACAAGCGACGAACAAAACTACATAAAATGCTTTCTGGCTATGGAACTTGGACGCAGTACAGTGTGTTTGAATGTTTTTTAAATACTGTGCAGTTTGCTAAATTGAAGGTGCAAGTTGAGAGCTTGATCAAGCCATCTGAAGATTCAGTACGTATTTATGTTTTAGATGCTGGAGCAGTACGTAAGACTATTACCTATGGTTCGGAGCAACCACGACAGCAAGAAACGATAATACTATGATGCTAATATGATACAAGCAAAATTTTGGCAGGGCAAAGTACGGGCAAAAACCCCCACCTCCCGCCAAATCGACAGAACCTTGACAATTTAATAGTTTCAGCAGTTCAAGTACGAACATAGAGCCTAGTTATAAATGCCGGAAATGGACTTTTAAAGTAGACCTGCCAAAAATGGTGTCGGGAATGGCTCTGTCATTAGCTTCTGGCTGGCTGG # Right flank : CTTTACAGACAACAATGGCTCCTAAATTCTTCACAAGCCTTCTAAACTGCGCTGGTTCATCAAAAATTACAGATACACGAATGCAGCGATCGCCTGGACAAAATTCACAATCAATCTTCTTGGGAAGCTAAAGCTTGCTCTTTCGCCACAGCCTCAGCTATAACTTGCCGGAGCCATTCAGAACGGTTGGGTTTGTTACGCACATAAGTATCTAACTCGTCTGGCAACAGTACCGATATAGGTTTCGCTCCAGATTTTACTCCTACTCCTTTTGACTGAAAGCGAGTAGCAATATCATTTCTTTCCATAGCAATGAGCCTTTTTATATAAGCTTATCCTAGCAAAGCCCGTATATATATGGCAATAAATTAGTTATTTTAATCATAAAATATCCAGATTCTGATAATAAACCCATATATATATGGGATAATAAAAGAGTAAGGAATAGGAACGGAGCGCCACAAAAACTCCCGGTAACGGAACCGGAACGCCCAACGTGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAAATAAATGAAACCCGTTCGCGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : NA //