Array 1 65248-64765 **** Predicted by CRISPRDetect 2.4 *** >NZ_CNIF01000017.1 Mycobacterium tuberculosis strain Bir 280, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 65247 36 100.0 40 .................................... CCTCGCAGAAAAGGGCATCGATCATGAGAGTTGCGTTGAT 65171 36 100.0 37 .................................... AATGCTGGCGACGATTTTCGCTGTTGTGGTTCTCATT 65098 36 100.0 39 .................................... GCACACCAGCACCTCCCTTGACAATCCGGCAGATCAGAC 65023 36 100.0 38 .................................... TCGCGGGCTCTGGCCTAAGGGTGCTGACTTCGCCTGTA 64949 36 100.0 41 .................................... CCGACGACGAGCAGCGGCATACAGAGCCACGGATACGCTGT 64872 36 97.2 36 ...C................................ CCTCATGGTGGGACATGGACGAGCGCGACTATCGGG 64800 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 7 36 99.6 39 GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC # Left flank : CCCGACGATGGCCAGTAAATCGGCGTGGGTAACCGATCCG # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACCATAGAGGGTCGCCGGCTCTGGATCACGCTCCCCTAGCCGTGTCCTCAGACCCAAAACCCCGAGAGGGGACGGAAACTGGACGCAGAATCGCACCGGGTGCGGGAGGTGCAGCAGTCCTCAGACCCAAAACCCCGAGAGGGGACGGAAACGCATATCGCCCGCCACACCACAGCCACGCTACTGCTCCGTGTCCTCAGACCCAAAACCCCGAGAGGGGACGGAAACCTGACGGCACGGAGCTTTCCGGCTTCTATCAGGTAGTCCTCAGACCCAAAACCCCGAGAGGGGACGGAAACTAGTACG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 1 897-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_CNIF01000061.1 Mycobacterium tuberculosis strain Bir 280, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ============================================= ================== 896 32 100.0 42 ................................ TTAAAACCGTGTTGCACTGCAACCCGGAATTCTTGCACGTCC 822 32 100.0 45 ................................ CATAGAGGGTCGCCGGCTCTGGATCACGCTCCCCTAGCCGTGTCC 745 32 100.0 41 ................................ AATGCTGGCGACGATTTTCGCTGTTGTGGTTCTCATTGTCC 672 32 100.0 45 ................................ TCCACATCGATTTCCTTGACCTCGCCAGGAGAGAAGATCACGTCG 595 32 96.9 44 .....................A.......... TCGTCGACGATCGCGTCGATGTCGATGTCCCAATCGTCGAGTCC 519 32 100.0 29 ................................ CTTGAATAACGCGCAGTGAATTTCGCGGA Deletion [459] 458 32 100.0 40 ................................ ATTTCGACGACAATTCGTTGACCACGAATTTTCAGAGTCC 386 32 100.0 45 ................................ TTGCGCCAACCCTTTCGGTGTGATGCGGATGGTCGGCTCGTGTCC 309 32 100.0 39 ................................ ATGTGCGCCGTCGCCGTAAGTGCCCCACGGCCCGTGTCC 238 32 100.0 29 ................................ CTTGAATAACGCGCAGTGAATTTCGCGGA Deletion [178] 177 32 100.0 41 ................................ CCGGCAACAATCGCGCCGGCCCGCGCGGATGACTCCGGTCG 104 32 100.0 40 ................................ CGCATGGACCCGGGCGAGCTGCAGATGGTCCGGGAGGTCG 32 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ============================================= ================== 13 32 99.8 40 TCAGACCCAAAACCCCGAGAGGGGACGGAAAC # Left flank : GTACGCCCTCGACTTGCAACTGCAAAGCCTCGTGCGTGTTATCGAAGCCGGGCACCCGTCGCGGCTCGTCGATATCGATATTACCTCCGAGCCATCCGGAGCCTAAATGCCCACTCGCAGCCGTGAGGAGTACTTCAATCTCCCGCTCAAAGTGGACGAGTCCAGCGGCACTATAGGCAAGATGTTCGTCCTCGTAATATACGACATCAGCGACAACCGGCGGCGGGCTTCACTTGCGAAGATCCTGGCCGGGTTTGGCTATCGCGTCCAAGAGTCCGCATTCGAAGCGATGCTGACGAAGGGCCAGCTCGCGAAACTAGTTGCACGTATCGACCGCTTCGCCATCGACTGCGACAACATCCGGATCTATAAGATAAGAGGTGTTGCGGCAGTTACGTTCTACGGAAGGGGACGGCTTGTCAGCGCAGAGGAGTTTGTGTTCTTTTGACATCATCAGCAGGCATTGTTACCACACGCTGGACGAATTGTCCATAGAGTCC # Right flank : C # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGACCCAAAACCCCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA //