Array 1 44932-46973 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZDT010000030.1 Salmonella enterica isolate 0781_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 44932 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 44993 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 45054 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 45115 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 45176 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 45237 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 45298 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 45359 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 45420 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 45481 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 45542 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 45603 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 45664 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 45725 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 45786 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 45847 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 45908 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 45969 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 46030 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 46091 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 46152 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 46213 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 46274 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 46335 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 46396 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 46458 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 46519 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 46580 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 46641 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 46702 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 46763 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 46824 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 46885 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 46946 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 34 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 63106-64276 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZDT010000030.1 Salmonella enterica isolate 0781_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 63106 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 63167 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 63228 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 63289 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 63350 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 63411 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 63472 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 63533 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 63595 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 63698 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 63759 29 96.6 32 .........C................... TTCTTGAATATGATTGCGGGTATATGTGGATA 63820 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 63881 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 63942 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 64003 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 64064 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 64125 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 64186 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 64247 29 96.6 0 A............................ | A [64273] ========== ====== ====== ====== ============================= ========================================================================== ================== 19 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //