Array 1 96345-91275 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQDW01000024.1 Pasteurella multocida strain 2389PM isolate swab isolate 1 contig_24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 96344 28 100.0 32 ............................ TGCTCAAGGCTGTTGTGTGAATGTTCAAATTA 96284 28 100.0 32 ............................ AAATGGTAAACCAACAGTAAACACTAAGACAC 96224 28 100.0 32 ............................ TTTTTGATAAACATCCGACCTTAAATGAGAAG 96164 28 100.0 33 ............................ CTGTTGAGCTTGTATTCTTTAAAGAATGATTGA 96103 28 100.0 32 ............................ ACTACGTCTTGAACATTATATTCTAGCATTTC 96043 28 100.0 32 ............................ TTTCATGATATCATCGCCTTGTGGATTGAAAG 95983 28 100.0 32 ............................ TTATTGAAAATGCGGTAGTCGCCTTTATAAGT 95923 28 100.0 32 ............................ ACCCTCAGGAGTCACCCCACCTACTGCCATAT 95863 28 100.0 32 ............................ TCAATGGCTGCTTCTGCTGCTGCTTCTACCAA 95803 28 100.0 32 ............................ TAAGTCTTCTTTCTTCATCCTGTTGAGCTTGT 95743 28 100.0 32 ............................ ACCTGAAAAACCTTTTGACATTGACACGAACG 95683 28 100.0 32 ............................ TACACTTCTCACCGATCAAGCCCACTGAGAAA 95623 28 100.0 32 ............................ GGAACACTTCGATAAGAACACACATGAGCTTG 95563 28 100.0 32 ............................ AAATTATTGCCAAGTATGCAATCGGTCATGGG 95503 28 100.0 32 ............................ CTTGTCTGTGAACTCAGTTGGTGTCCATCCAG 95443 28 100.0 32 ............................ TTTATGGAGCAGGGGACGCTAAGATTGGTGAG 95383 28 100.0 32 ............................ ACTAGATGCTGGGAAGACGTGTTTAGTTTGGT 95323 28 100.0 32 ............................ ATATAAAGCCCGTCCGTAGGCTTCCTTACCGA 95263 28 100.0 32 ............................ TATAAGGCTCCTGTGGGAAGTCCTTGATGTCT 95203 28 100.0 32 ............................ TAAGAAATTACTAAATGTAGCGTAAAATGTGC 95143 28 100.0 32 ............................ ACTCATTTAGTCGACCGACAGGTCGCTTTGGA 95083 28 100.0 32 ............................ AATAAGACAGCCCTTTTGTGTTCTCCCTAACT 95023 28 100.0 32 ............................ ACTGATTTATTAAAGAACAAGTAAGTTAATTG 94963 28 100.0 32 ............................ TTATGGTTAACTTATTCTTACAGGCGCACTAC 94903 28 100.0 32 ............................ AACGTGACTGATTCGAGTTCCAAAGCTACCTG 94843 28 100.0 32 ............................ TCAAAAAATCATCTAAATAAATATCAGACAGA 94783 28 100.0 32 ............................ TATACCCCACAAGGTATTAATGTGCTAAACTT 94723 28 100.0 32 ............................ TCGAGGACATCTACCCCTTTATCATGTATTAA 94663 28 100.0 32 ............................ GCAATGCAAGACAGTAAAGCGTATGGAGCTAT 94603 28 100.0 32 ............................ CGCTGAAAAACATTATATAGAGGTAACAAGTG 94543 28 100.0 32 ............................ TTATGGTTAACTTATTCTTACAGGCGCACTAC 94483 28 100.0 32 ............................ TTTTAGACACGCAATTAGTCGACCAGCAGGTA 94423 28 100.0 32 ............................ GACGATAATATCAAAGAACTCCTTTATGTCAT 94363 28 100.0 32 ............................ GTTATCAGCGTCCACTAGGTCATTTAGTGTCT 94303 28 100.0 32 ............................ TTTTATCCAGACCGTACAACGTTTGAACCGCA 94243 28 100.0 32 ............................ AATCAGTGCAACCTGTGCTGTCTGTAAATTGT 94183 28 100.0 32 ............................ TATTGACAACTGTAATTATCTTCTATATTATA 94123 28 100.0 32 ............................ TACGGCTTCTTCTTCACTTACATATTGTAAGA 94063 28 100.0 32 ............................ TAAAGGCACACTATCCCCTACCTCTTCTTCAC 94003 28 100.0 32 ............................ TTTAGTTACTCATCTAGTCATCCATTACTCAT 93943 28 100.0 32 ............................ ACCTTTAAACAGAAACGCTTTCGTTCCACTAG 93883 28 100.0 32 ............................ AAAAGGTTACACACCTAAGGAGGTATTAGAAG 93823 28 100.0 32 ............................ TTTAGTCAACTCATCGTCATCCTTTAGTCAAC 93763 28 100.0 32 ............................ CCACTAAGACTACTTTGAGCACGTCACCTTGA 93703 28 100.0 32 ............................ TCCTCGCGCTTGGACGAGAATCGACAAGGGTG 93643 28 100.0 32 ............................ TACTAAAAGACTCCTCTTTGTTATCGAAGTGG 93583 28 100.0 32 ............................ TCTGTCGGCTCTAACCACATGACCAAATTAAT 93523 28 100.0 33 ............................ CAAGTGAGTGGGCAGGGTATTGTAAAGGTAACA 93462 28 100.0 32 ............................ ACAAACTCCCTAAAGCTTTGCCGTACATTAAA 93402 28 100.0 32 ............................ AAAATTCACATACAAGGTACTATACCGTCGGA 93342 28 100.0 32 ............................ GTAGATGTGCCATTCAACAAGACTCAAGTACG 93282 28 100.0 32 ............................ ACTATAATGCTACCTCACTGGGTTGGCGCTGT 93222 28 100.0 32 ............................ ATGTTTGTTCCCCTAGTTGGTTGATTGGTTGT 93162 28 100.0 32 ............................ ACTTCCGCTTGAAAGTGCTGGTTTGAAACTTT 93102 28 100.0 32 ............................ ATGGGGACAATCAACGACCAGTTAAAAGCAGG 93042 28 100.0 32 ............................ GAATTTCCCGCCATCAACGCGCACTTTTCCGC 92982 28 100.0 32 ............................ ATTCGTGACAAAAGACGAATATAAGAAAAGAA 92922 28 100.0 32 ............................ AGTGCGGCGTGCCGTCGTGGTGTGGCTCTGTT 92862 28 100.0 32 ............................ GATCGCAAATAAAATCGCCGATCTTGGCACTA 92802 28 100.0 32 ............................ GCGTCGGCGGGAAGTTATCGATCAATCCCTGA 92742 28 100.0 32 ............................ TGCTGTTCACTGGCACAATAGTAATGGTTCAT 92682 28 100.0 32 ............................ TAAATAAACCACTAAAACTAAGAATTTTTTGA 92622 28 100.0 32 ............................ GTTTGGGAGTGGAATTGTTTGATGAAAACAAA 92562 28 100.0 32 ............................ GTTTCTGACACTTCAACTGTTAGACTGAACGT 92502 28 100.0 32 ............................ TTCTGCGATTTTAGTCGGTGGGTATCATCGTG 92442 28 100.0 32 ............................ AAGCCCTTGTTACACCAACCACCTCTGTTGCC 92382 28 100.0 32 ............................ CAGCTCGCAATGATTCTGTTTGAAAAGGCGTT 92322 28 100.0 32 ............................ TTCGTCCGTAGTTACAAACAGCATAGCTCTGA 92262 28 100.0 32 ............................ TCTATATATTGTTTTTCATTGGGCTTGGTCGG 92202 28 100.0 32 ............................ TCCAAGCGCGAGGAGGGATAACCATAGGCATA 92142 28 100.0 33 ............................ CAGGAAAAAAACCGAAGTATTTAAGAGATTTCA 92081 28 100.0 32 ............................ ATTTACCCCTTCAATATCGGTTGTGTATTTCA 92021 28 100.0 32 ............................ CGTTGAAGAAACCTCCACGCCTTTAAAATCAA 91961 28 100.0 32 ............................ TTTGAAAACCCGGTATTTTGATTTTTCTCAAC 91901 28 100.0 32 ............................ ATTTATCCCAAAGCGACATGTCATCAGGCATC 91841 28 100.0 32 ............................ CATTTGGGGCAACGAATGACGAAAAGCGCACA 91781 28 100.0 32 ............................ TCTTTCCGTTTATCTTTGAAAAAATATCATAT 91721 28 100.0 32 ............................ GTTTAGTAACGGGTCAAGCGGAAGATGAAATC 91661 28 100.0 32 ............................ GCAATTTTGGGTATTCGTTTTGATTCTGAATA 91601 28 100.0 32 ............................ AAAAGCATTCTGTTTACGCGTAAAAGGATCAA 91541 28 96.4 32 ............G............... AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 91481 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 91421 28 92.9 32 ............G....T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 91361 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 91301 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================= ================== 85 28 99.6 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 70177-71960 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQDW01000025.1 Pasteurella multocida strain 2389PM isolate swab isolate 1 contig_25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================= ================== 70177 28 100.0 32 ............................ TCAAAATTAATCTACCAACTGAACTGGAATAT 70237 28 100.0 32 ............................ GATGTATTCCTCGCAATAAGAACGACCATAAG 70297 28 100.0 32 ............................ TCAATGTTTAAACGTTATAATCGTCTGTTTGC 70357 28 100.0 32 ............................ GTAGGGGGTAGTATGTCACTGGGTCGCTTATA 70417 28 100.0 32 ............................ ATTTCAGTTTCCTTGTGTTGTTTGTTAATCTT 70477 28 100.0 32 ............................ GGATCGATGATTGCTAGCAAGTAATCTTTGAT 70537 28 100.0 32 ............................ TTCCGATTTTTGATAGTCAAAGACTACTGAGT 70597 28 100.0 32 ............................ AAACGGTCGTGCGTCGTTCGGGTTGTGATCTT 70657 28 100.0 32 ............................ GAAACACTAGAAGATTTAACGGTCATTGAAAA 70717 28 100.0 32 ............................ ATTCGATTTCCAGTGCCGAAAATCCATGCCCT 70777 28 100.0 32 ............................ ATAATGACGTGTTCAACTAACGGCTGACAATC 70837 28 100.0 32 ............................ CACAACATGTGCTGAAAGTGCGTGAGATTTGA 70897 28 100.0 32 ............................ TACCCGATGTTAGAGGCAATCAAAGTGGAGCT 70957 28 100.0 32 ............................ AAAGTCTCATTTAACACCGCGCGACGCTGGAA 71017 28 100.0 32 ............................ AAGCCCACCTTGCGCTTGAACAGATGAATTAA 71077 28 100.0 32 ............................ TTTAAGCTACGTTTATCCGCAAGATTCACTAC 71137 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 71197 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 71257 28 96.4 32 .........T.................. GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 71317 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 71377 28 92.9 32 .........T..............C... GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 71437 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 71497 28 96.4 32 .........T.................. GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 71557 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 71617 28 96.4 32 .........T.................. GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 71677 28 100.0 49 ............................ GTTAAAGCGAATTTCACATCTAAGCTTGAAATGTTCACCATCGTGTAGA 71754 28 75.0 32 NNNNNNN..................... GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 71814 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 71874 28 100.0 31 ............................ GTTGCTAAGAAACTAACGGATAAGCTTGCGA 71933 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================================= ================== 30 28 98.5 33 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //