Array 1 10909-13348 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASSD01000241.1 Paenibacillus zanthoxyli JH29 S8_contig00472, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 10909 31 100.0 36 ............................... CCACGAGTTTGGATGCTTGATACAAAGGGCGATACG 10976 31 100.0 35 ............................... CGTCAACCAAGCCAACGGCATGTACAAAGACGTTG 11042 31 100.0 35 ............................... ACCGTCCAGGCTAACTACCGGTTACGGCGAAAATG 11108 31 100.0 37 ............................... ACCAAGAGCAGTTTTGCCACTTGGGCTGCCAACCGAG 11176 31 100.0 35 ............................... CGTGGTCATCATAAGGCAACTACCCGCAGGCCCTG 11242 31 100.0 36 ............................... AATTAACTGCTGATGAGGTAAAAGAAAAACTAAGCG 11309 31 100.0 37 ............................... GGCAGTATTTTGAAGCTGACCTGCAGCCCTAATGCCG 11377 31 100.0 37 ............................... ATTCGCCCGCCCGAATATATCCAGCTTCGTAATCTCG 11445 31 100.0 38 ............................... TGTATCCCTCCGAAGGATAAACGGCAAGGCTACCATCG 11514 31 100.0 38 ............................... CCCAGGGGATGCGGTTTATATCCATAATAAACCCGACG 11583 31 100.0 36 ............................... CAGAGCGTCGTCCCGTTCGGCTGCTGTACAGCAAAG 11650 31 100.0 35 ............................... CTCCCCCTCAAGCATGATTTATCCCATTCATTTCG 11716 31 100.0 36 ............................... GGCAATGCGGCAAGCACGTCGTCAGCGGCAGCTACG 11783 31 100.0 35 ............................... GATCAGCTCAACACCTTGGCCAAGTCAACGGCGGG 11849 31 100.0 38 ............................... ACAAATGAATACAGCGCTGGTGCTGCATCTGTTGATTG 11918 31 100.0 35 ............................... CCGTTATCATACATCTTTCGTGGACAAATCTTGCG 11984 31 100.0 37 ............................... ATGATTGACCTACCGTTTGTTCTCAATGATCGTGACG 12052 31 100.0 36 ............................... AATCGGACTTTTACGATCTCAGCGCCGACGCCCAAG 12119 31 100.0 35 ............................... ATTCTCCATTCTGGATTAGTTTGTCTTTCATGTAG 12185 31 100.0 36 ............................... ATCTTGTTCGTCGTCTTGATCGTCTTACTCAAGGTG 12252 31 100.0 35 ............................... AGCTCCCGGTCCACTTGCATGACGATGCCCTTAGG 12318 31 100.0 35 ............................... GCTTTCCCCCGCCCTCTCTCTTTGACAAAATAAAG 12384 31 100.0 37 ............................... TGTGAGCTAAGGAACCGAGACCATTTATGGCTATATG 12452 31 100.0 36 ............................... CTGCCTTCTTTCTTGCTTTAAACCACGCAGAGGGCG 12519 31 100.0 35 ............................... CAGATGGTAAGATTGGATACTTATTTGGTAGAGAG 12585 31 100.0 36 ............................... ATTGGCTGACGTAGCGACGGCCGTTGGTAACTGGTG 12652 31 100.0 35 ............................... CCCTCAGCAGAGAATTCGACTATATATTTGTAATG 12718 31 100.0 35 ............................... TATGTCGCCTAGGCGTTGACTTAACAATAAATCAG 12784 31 100.0 35 ............................... CTCTAGGAGACGAACGAGTGCTGGAAGCGAAGGTG 12850 31 100.0 35 ............................... CGGTTGTTTGCCGAGCAGGTCAACGGAGGTCTGAG 12916 31 100.0 37 ............................... CTACATTACAGGATTATAACAACTTCAGTGCTTGGAG 12984 31 100.0 34 ............................... GCGCCGTCCTTGAAGGCGTAGTACATCCTCACAG 13049 31 100.0 36 ............................... GTCTTGCGGTGGCTGCTAGACACGATCTGGAAACGG 13116 31 100.0 37 ............................... CTCGATGCGCAAGAACAGGCAGCAAAGGAGCGCCTGG 13184 31 100.0 35 ............................... AATCCTATCTGGATCGAGCGGCCGTCAAGGTAGAG 13250 31 93.5 37 ...........A.........A......... ATCCGCAGTCTCTGTTAGGCTTAGCAAATACACACCG 13318 31 96.8 0 ..........................T.... | ========== ====== ====== ====== =============================== ====================================== ================== 37 31 99.7 36 TCGCACCCCATGCGGGTGCGTGGATTGAAAT # Left flank : ATTTTTATGGAAGTAGGTGTTTTCAGATGCTGGTCTTGATTACGTATGATGTAAGTACAAAAAGCGCGGAGGGCAGAAGACGTCTGTCGCAAGTCGCCAAGAAGTGTCTGGATTACGGGCAGAGGGTCCAAAACTCCGTATTTGAATGTATTGTGGATACGACGCAGTTCCGCCGGCTAAAGTTTGAACTGAAAGAACTGATCGACGAGGAGACGGACAGCCTGCGCTTCTATAACCTGGGAGACAAGTATAAGACCAAAGTCGAACACATTGGCGCAAAAAGCTCATATGACATGGAAAGCCCGCTGATTATTTAAGGTGCGAATGTCAAGCTCCCATGATTTCCCCGGGTCCTTCGCACCTCGAAATCTGTCGAAAAGTAGAAAAATTTCGGTTTGTTGAAAAAAGTCAACCCTGGAGTTATACTTCTTTTGCAACATCTTTGGCGGAAATAGAAGGAACTGATGCCATTCTCAGGTCAATCTTAATCATTTTCGCCG # Right flank : TTCGTAAAACCTAGCTGTATCATGCTCTTACTGAGTCCCACCCCGCACGAGTGCACAGACCACCACTAATAACCAAAGCTTCTAACAAGATGACGAACCCTGGCTTTTTATAAAAGTAAACTGAAAAAATCATTTTCTATACGCTAATGTATAAAAAATAAACCGACTCGCTACCACGACATGGGAGCAAAAAGTAAGCGTTCACAACTTTGTAACGAGGCTTGAAGAATTTTGATGGATTTTGGATAATAATGATTGTTTTTTGCTTGATTTATGTTACTATATGGTCAGTTGGAGGAATGAAGATGCTGACTGAAGAACGCCACGGAATGATAATACAGCGCTTACAAGAAAAGGGCGTCGTCAAAATGCAGGAGCTGACGGAAATGCTCGGGGCTTCGGAATCGACGGTACGACGGGATTTAGTTGATCTTGAGAGCCGTAATTTGCTGAAAAGGGTACATGGCGGAGCTTCGCTGCTGCCTCATAAAAGCCAGGAG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACCCCATGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.00,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 504-133 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASSD01000195.1 Paenibacillus zanthoxyli JH29 S8_contig00240, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 503 31 100.0 38 ............................... CAAAAGGTCAGCATGCGAGTGGGGTAACGATGCTCAAG 434 31 100.0 37 ............................... CGTATTACGAATCGCATGAGGACCCGGATACAGGGGG 366 31 100.0 35 ............................... GCCTGTCTACATATGATAGAGCGAGATTAAGAAAG 300 31 96.8 38 ..................T............ CCATCCACAGGGGCACCAGTACCAGCCCGGGCCTCGGG 231 31 100.0 37 ............................... AGGTTGTAGAGGACGAAGAAAACGTGACCGCTACGGG 163 31 67.7 0 ....T.T..T.A..A.A..C.A...C..T.. | ========== ====== ====== ====== =============================== ====================================== ================== 6 31 94.1 37 TCGCACCCCGTGCGGGTGCGTGGATTGAAAT # Left flank : CCGA # Right flank : TTTTGTATTGGGCATTGATTCGACGATAGGCAACAAGTCGCTCCCTATGTGGGAGTATTATTTTTACTCGGCAAATCCTATCAGAACGCCGCATCCTTTTTGGCTCAAAACCGAAATTAGTGGTTGACGAATC # Questionable array : NO Score: 8.96 # Score Detail : 1:0, 2:3, 3:3, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACCCCGTGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.60,-5.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1343-1707 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASSD01000430.1 Paenibacillus zanthoxyli JH29 S8_contig00470, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1343 32 100.0 35 ................................ TTACATATCTGGATCGCGACAAGCAGGATATTGAA 1410 32 100.0 34 ................................ ACTCGAACCTCGTCACTCTGCTTGTAGAATACCG 1476 32 93.8 36 A.T............................. ACCGGTGACTATAACGCGGCCGACACGCTCATCGAC 1544 32 96.9 34 ...................T............ CGCTCTGATGGAAGCGACGGAGAAGCGGAAGGCA 1610 32 87.5 34 ..........C.A............C.A.... ACGAGCAAGCGGTGCGATACCGAACGGCGTAGTG 1676 32 68.8 0 ..T......TA.A.....AT...A.AG..G.. | ========== ====== ====== ====== ================================ ==================================== ================== 6 32 91.2 35 GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAT # Left flank : CAAAATACCGCAAATTCATGACTCGTCCTCCTGCAATAATGTCTATAAAATCTCCCGTCTTTCCTCATTAAGCATGGCATATTCTTTAAGCGACCACATAAAAAGCTGTTGCCGTAAAGCGGATCAGCGTGATGTAGCAGTATCCCGGTTCCGATGATTTGAGCGCGAAAAACAGGACTGCTGATAATATTTATTTTGAAAAAAATGGAAGAAATCCACCTCAAGTATTCCGCTTTCTGAGGATAAGCTGGATAGGCTAGAAGCCAAGGGGGAGAGTACAAAGACAGGCTTTTCTTGTCAGCTCTTCTCGATTGTCTCTTGCTAATCAAAAAGTGCGAACCTGAAGCGCACATGAAAACCCGGGGAGGTTCGCACCCCTTGCGGGACAAGGGTTTTTGCGATATTTTGTAGTTAAAGAGTCATGAAGTGGACTGTTTTCACGGGGGTTCGCACTTTTTGGGCTTCAAACCCTTGCGGCGTAAGGGTTCTGAGGTATACCT # Right flank : TTTGAACGAATCGATAAACTAATTCTGACTGAAGCGCAACTACGAGAGATTGTCGACAGCTACGATATGCAGCATGAGGGGATCGATTCTTTTTTAAATTTGGAGAGCAAGGAGGTTGTCTTCATAAATAATGAGTTTTCTCATCCGGAGGACGAGGAATTGGAAGAGGAGATTGATGAGGGGTTCGGCGAAATCTGGTTCCGCTTGCCAGAACGGTATTCCAGCGACGGGTACCGGGATATGGAGGATTTTGTAGATATTGTATCGGACGAACGACTGAGAGAGCGGTTGATAACGTCCCTTAGAGGGGGACGCGGGGTTTTTCGCCGCTTTAAAGATATACTGGGCGACACCCCTGGAGAACTAGAACGCTACTTTCAGTTTGTGTATGAACGCAACCGCGAACGGGTACTAAAGTGGATGGAAGCAAAGTTTGATATGGAGATAGAGATAATAGGCGGAGAAGAGCAAGAGGGTTTATGAACGATCCAAGCTATTGC # Questionable array : NO Score: 8.51 # Score Detail : 1:0, 2:3, 3:3, 4:0.56, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 470-34 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASSD01000445.1 Paenibacillus zanthoxyli JH29 S8_contig00241, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 469 31 100.0 36 ............................... TGCCCAGTCGGTTACGGCTGTAGGAGCGCGAACCAG 402 31 100.0 38 ............................... TATTATGGATAGATACAACTTGCTTGATAAGCTCGGAG 333 31 100.0 38 ............................... CGCACGGCAAGCGTGTGGATATGAATGACACCGCCGAG 264 31 100.0 36 ............................... GCTGAGGCGATATAGCCAAGCATCTGCCGCTTGCTG 197 31 100.0 35 ............................... ACTCCCATCATTAACCATCGCACAGGGAGCATTGG 131 31 100.0 36 ............................... TATTCGTCAATTGAAGACGACGGTAAACCGGAAACG 64 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ====================================== ================== 7 31 100.0 37 TCGCACCCCGTGCGGGTGCGTGGATTGAAAT # Left flank : | # Right flank : TCGACAACTAGCGCAGCCACAGCTCCGCTATAGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACCCCGTGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.60,-5.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [21.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 2048-1546 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASSD01000515.1 Paenibacillus zanthoxyli JH29 S8_contig00242, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ========================================== ================== 2047 32 96.9 35 ............G................... TACGGGGAATCACGGCGGGGGCCAGAGCAAGAGCC 1980 32 93.8 33 .............T.....T............ TCCGAGAGCGGCAGCTATCGCGGTCTCCCACTC 1915 32 96.9 33 ............G................... ACGACGTCAACCCGTTTATTCTCGAACTGTGTA 1850 32 100.0 35 ................................ GATATCCCTCCGAAGGATAAACGGCAAGGCTACCA 1783 32 100.0 34 ................................ AAGGAATTGCAGAAACGTTGATGTATAAGCAAGG 1717 31 87.5 35 ......T..T..G....-.............. CTCTCCATGGATTTAAACATGATCGACTCCACCGC 1651 32 96.9 42 ....................A........... TTTTCCCATGACCATCTCATCGACAAGAACATTATCAAGTCG 1577 32 84.4 0 C........TA...........AA........ | ========== ====== ====== ====== ================================ ========================================== ================== 8 32 94.5 35 GTCGCTCCCCGTACGGGAGCGTGGATTGAAAT # Left flank : TACTATTCCGCTGCCTTCAAGAAGGAGAATGTAGACGCTGGCTCCGGGATGCTTATGAACGGGCAATTACTGCCCCGGTCCAAAGTTCAAGACAAACACCGTATGCTTGTCTTCTTTAAAGACAATGCGCTTGGTGAATCGGTCCGCTTGGTATTCCTGAAATTGAACTAACTCTTTCTTTTCCATTTAAAATCACTCTCCTTGTTTCGGATTAATGCGGTTTTTCAGCCGGATTTCGTATTCGTAGAAGTTAATTAAATTGTATAAGAATCGGGAAGATGGCTAGTGATTTCAATCACATTATTTTCAATCGAATCGTGAAAGGCTTGTCTTGTTGCTGCTATTCCTGCTCAGGATCACTCGTTCCAAGTGGCTGAGCCTTCTTAGGTGCGAACCCCAAGCGCACATAAAAACCCCGGGAGGTTCGCACCTCTTGCGGGACACGGGTTTTCGCGTTATTTTATAAAGAAAGCATCCTTATAAACAACCAGTTTTAGGAG # Right flank : GCCTCGGAAATAACATTGCCTCACATCGATATGCTGTCGCTCCCCGTGCAGGAGCCAAAGTTTCCCCCGCTTAAAAATCATATCGTACCATTGAAGCCAGAGTTTAAATTGATTAATCACAAAGCAGAGTTAGATTTAAAGCTCAACAACGAAAAAGCGCCGAAAGCTCCGCTTTAATAGCAGAGTTTCGGCGCTTTATTATTAGCCTAAGGGAGAGTTTACTCTTTGGGGCGTACCTCAAATAATTCGTTGGGGCTGATATCGAAGTATAAACATAACTTCACGATCAGTGCTGCCGAGATTTTTTTCTTATCCATATTGGTGTTATGCATCAATTCCATAATGGTCGTTCTGCGGTGACCTATCTCTTTAGACAATTTCAAAACGGACATATTACCGTGCTCTTTTAAAATCTCGTCCAATTTGCAATGGAGTATATATTTGTTATATTCCATTTTTTGTCCTCCGAATCAAAGTGCTGCACTTCAGACGTGCATGTG # Questionable array : NO Score: 8.45 # Score Detail : 1:0, 2:3, 3:3, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTACGGGAGCGTGGATTGAAAT # Alternate repeat : GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //