Array 1 1658504-1656391 **** Predicted by CRISPRDetect 2.4 *** >NC_017834.1 Bifidobacterium animalis subsp. animalis ATCC 25527, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================================================================================================== ================== 1658503 29 100.0 32 ............................. CTGTATCCACGGCGACCCGTCATACACGAATT 1658442 29 100.0 32 ............................. TGCAAGGCCGAGTCCCTTGCCTACGCCGCTGC 1658381 29 100.0 32 ............................. CGCTGCGGGAGGACAGTCAGGGTCGTCGATTG 1658320 29 100.0 32 ............................. GTTGCCCATAGCGCCTTCGATGGTCTGCGTCG 1658259 29 100.0 32 ............................. TTCAGTATCCATGCGTCGCCCTTGTGGTGGCG 1658198 29 100.0 32 ............................. AGATATGGGTCGAGCGCACGAGGTCTGCGCAG 1658137 29 100.0 33 ............................. GTTCCGGCGCTAGCGCGGTATTAGCCGCTACAG 1658075 29 100.0 32 ............................. GTGAGAGCGCAAGTCGGGTCAAGAAAACGTTG 1658014 29 100.0 32 ............................. TAATACCCGTAATGGGAACTCGAATAGAAGAG 1657953 29 100.0 77 ............................. GCCGGGGCGAAGGTGAAGACCTGGCGTGAGGTGTGCGGCAACAAGGGTCCTGCCGGATTCGGCGAGGTCGCCAAGAA 1657847 29 100.0 32 ............................. GGTATTCGCTACGAGCTAGAGGGCGCGAAGAG 1657786 29 100.0 32 ............................. AGCGAGAATTGGCTGGACGTGCAAGCGCGTGC 1657725 29 100.0 32 ............................. ACCGAGTGTTTCATCAACTCAGCCAACGGATA 1657664 29 100.0 33 ............................. TTGAGCGTGGGGTACTCAGGTATGCGATACATG 1657602 29 100.0 32 ............................. GCAGCGTCAGACACGAATGCGCGCACTGTCAC 1657541 29 100.0 32 ............................. TCACGCATATTACCTTGCGTGGCCGCTGGAAT 1657480 29 100.0 32 ............................. CTCATGCCGTCCATCGCGTCCGCCATGCTCTC 1657419 29 100.0 32 ............................. TAATCCATGACGCCGTTTTTATCGTTCTCCAA 1657358 29 100.0 32 ............................. GACAAGCGTAAGGCAGCGAGGGGCGGGAAGTC 1657297 29 100.0 32 ............................. GCACGCTCGGTTGCCGGCGTGTAGTTGAGTTG 1657236 29 100.0 32 ............................. TCGGCATCACGCAACGCCTGCACCTGAGTCAA 1657175 29 100.0 32 ............................. GCGTCCGGCATGCTCACCGCGGACGGCAAACC 1657114 29 100.0 32 ............................. GGTGGGCGACCAGCGCGAACGGTGCCGTCCAA 1657053 29 100.0 32 ............................. AACCGAGCGTCCAACAGCACTCAAACCGATCG 1656992 29 100.0 32 ............................. GCGGGCAGGTCCTTGAGCGCGACATCGCCGTA 1656931 29 100.0 32 ............................. GCGGGCAGGTCCTTGAGCGCGACATCGCCGTA 1656870 29 100.0 32 ............................. CCAACAGCAGCCCAAGGCACGCTCATCGAAAG 1656809 29 96.6 32 ............................A GGTTTTCGCGGCCGCATGTGATGTGCGAGCCG 1656748 29 100.0 32 ............................. TTGGGGACGGCCGTCGGCTGTGGGTCGTCGCT 1656687 29 100.0 31 ............................. GGCGTCTTCGACGTGGCCACCGCCTTCATAC 1656627 29 100.0 33 ............................. TAATCGGAGGGTGCAATCGCACACTCAAACACG 1656565 29 86.2 118 ..........T...A.A......A..... CAGATTCGTCTGATCCGCGCCCGATGAAAGAAAACCGAGGCCTTGGGAAGTCACCAACAGGTGTCTTCGCAAGGCCTCATCTCATAACACATTCTACCACACCTAATCACGGTGATTG 1656418 28 79.3 0 .......T......A.T...-.C...T.. | ========== ====== ====== ====== ============================= ====================================================================================================================== ================== 33 29 98.9 36 GTTTGCCCCGCACAGGCGGGGATGATCCG # Left flank : TCTGATCGCGGGATTCGGGAACTACATTTGTGAGGCACCATGATAGTGATTGTGCTGACTTCCGCACCTCCGAAATTACGTGGACATCTCACTAGATGGCTGCTGGAAATCTCTGCGGGGGTGTATGTGGGCAAGGTCTCCGCTAGGGTGCGAGAACTCTTGTGGGTGCAGGTCCTTGAGAATCTGGAGGAAGGGAAAGCCGTGATGGTATATTCCTCGAATACTGAGCAGGGGCTTGAATTCAAGACTTATGGGCAGACATGGCAACCGATAGATTATGATGGATTGGAGCTTATCCTGCGGCCGGCCGAGCAATCTTCGGAGAATGATTCCGCCAGAAGACCTTCGCGCGGACGGTGCACGGGATGGAGCAATGCGTCGCGGTATCGACGATTCGGTCGATGATGGTGCGTCGAATAGCGACGACGGAAAGTGAGCGGAGTGTGCAAATCCAATCTTTTGACATAGTCGAGAGAGTGTTTTGCCAGTAAAGTCGGACT # Right flank : GAGTGGTTCCGGCTAGCCTTAGCTGCCGGAACCACTTCGTCCAATCCTACCCCCCCATCACCCATTGGAGCTGAATATTATGAACAACAATGCAAGGATTTCGACCGCCATAGGAGTCGTCTCACTGACGTTCGGCATCACAGCACTATGTGGAGCGCTGAACGGAAATGCACTAATATCCGGGGGATTCGCAAGCGCCGCCGTCATCGCTGGTCTCGCTGCCGGCATCTGCGCATGGAGAGGTCGTGGCGACGACTGAACGGTATCTGCTGGTGGCCGAGGTGGTCGGTTTGCTCCGTATGACTGGGGAGAACCCGAAGCATCCTATTGGATGGCTTCTCCGCAGCGTTCTGGTGTTGTGTGATTCATTACCGGCGAGCAGAATATGGGGGTGGTACACTTTCTTGAAGATGCACCTGCTTTATGCTTTATATTGTTAGATATCCCTAACATTCCTTATCCGTTTTGAGCGGATACTCAATTTGAAAGCACGGTTTTCA # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.31, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCACAGGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTGCCCCGCACGCGCGGGGATGATCCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.40,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //