Array 1 88000-90068 **** Predicted by CRISPRDetect 2.4 *** >NZ_SITH01000055.1 Obesumbacterium proteus strain PCM_1204 744, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 88000 28 100.0 33 ............................ CCGTTAATCATTGTTTCGGATTGTCTGATTCGT 88061 28 100.0 32 ............................ GCCGAGGTAATGCCCCCAAAGCGATAGCATAT 88121 28 100.0 32 ............................ TTCAGAATCGCACTGATGAGAACGGTAATGAT 88181 28 100.0 32 ............................ ACTTCAACTATCCGCTCTGACTGTGTTTCACT 88241 28 100.0 32 ............................ ATGAAGCCTGTTCCCATGTTATCTGGGACTGT 88301 28 100.0 32 ............................ GACTTGAGCGGGGGTGGCATGTTCAAGTCGGG 88361 28 100.0 32 ............................ TCGCAAGAGAGGGGAGGATAACAGTGAAATGA 88421 28 100.0 32 ............................ ATTAGCGCTCTGCGCTCTTCTCGGCTTAGTTC 88481 28 100.0 32 ............................ TGAACGGAACATTAAAGCCAATCGGAGGAAGC 88541 28 100.0 32 ............................ TGCTCGCAAATCATTGCGTAGCTCTTCACGTC 88601 28 100.0 32 ............................ TTGATGGTTTTTGAGTGCTTAGCCAAAATATC 88661 28 100.0 32 ............................ ATCCAGAACGCACGCAATACAACCCACACCCC 88721 28 100.0 32 ............................ AGCCACACGGCCGCGTAAATCTTGCTCGTAAT 88781 28 100.0 32 ............................ GCGATCGGTATCCGCGATGATGGCGACAAAAC 88841 28 100.0 32 ............................ ACGAAGAAATTTTGGCCCCATTAAATGCACAG 88901 28 100.0 32 ............................ AATAGCATGTTTGGCGCAGTGGGTCAGGGTTA 88961 28 100.0 32 ............................ GGCAAAGCGTAGCGCCGAGCCTACAACCGCGC 89021 28 100.0 32 ............................ AGAGACGTGACGAAGCGTGCGGGATTAGTGGT 89081 28 100.0 32 ............................ GATCAGCCCCGGTTCGTTTTCCGCACCAAACT 89141 28 100.0 32 ............................ AACACCTTGCCCAAGCCACTCCGGAGATACGC 89201 28 100.0 32 ............................ AAAGCCCGCCGATACTGCTTCTGTGAACCCGT 89261 28 100.0 32 ............................ GTACTGGTTCTTCTAGTACGTTCTCGCCGTCA 89321 28 100.0 32 ............................ GAGTTGTTCGAGTTCGCCAAGTACGCGATCGT 89381 28 100.0 32 ............................ TCATGAATATATGCATCCATAAGAGCGCGTAA 89441 28 100.0 32 ............................ TTGGGCAGGATGAGCCTAAAGGATGTCTATAT 89501 28 96.4 32 ............G............... GTGTTTTCTGGCTTATCGCCCACGACCTGTGC 89561 28 100.0 32 ............................ GCGTTTTCACGGCTCGCGAATTTCTGCATGAT 89621 28 100.0 32 ............................ GTCAGGATCACCCAGCGTGGCTGTAATGATCG 89681 28 100.0 32 ............................ CATTTGGCACGTCTTTTAGCGCAGATACTTTA 89741 28 100.0 32 ............................ GTAATACGCTCCCTGAAGAATGACAGCGCCAC 89801 28 100.0 32 ............................ ACGGCGTTATATCATCGACTGGATTAGCTACG 89861 28 100.0 32 ............................ GTACACAACATTAAAGCGCGGGCCGTTGCTGA 89921 28 100.0 32 ............................ TAGATGCTCTGGCAAATCCAAATCGAATGGCT 89981 28 100.0 32 ............................ GTGGAGCGTTCTAGAACGATTTTTGGGGATTG 90041 28 96.4 0 ..................G......... | ========== ====== ====== ====== ============================ ================================= ================== 35 28 99.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CGATAATCGCAAATTAACCCTGCGTAGCAGATCTCATGCTTTTAACATCAGATTTCCAAGGTTATGGCCAGCTAACTCACCGTTACCGTTAAAACGATATTCAAACATAGCAGAAGCCCGTTCGCGTTGGCCTCTACCGCGTATTTCGCCGATCCACCGTATTGGCGCCACATATCCTAGAGATGAAATTGTTTTCGTTGCGGTGACTAGCGCACATCGCAGCATGGCCTTCGATGCCGCCGAGTTCATTATGGACTACCTCAAAACCCGCGCGCCGTTCTGGAAACGAGAAGTCGCAGAGCAAGGCGATCGCTGAGTCGATGCCCACAACAGCGACCACCAAGCGGCAAAGCGCCGGTCACCTCTTCTAACCCTTTTTTTTGCCTTCATGCTAACTCATTGATTTTTAGTCCCTCTAATGAGCCGTAAGAAAAAAGGGTTAAATTCCCCAAAATGAGCCACCGATCTGATTAATAAAACCTTTCCGCGAATATCCTACA # Right flank : ATGTAGTGCAAAAGCCGGAGTATCCGGCTTTTTATTAATAATATAAGAAAATTTTTTAATTAGCGTTTTATTATCACGATTAGCTTACTTTAACATGGCTAATCTATTATTTATTTAGAGTTAACTCATGTTTTGTGATTGAATATTTATATCAGGTAAAACCTGATTTTAGGTTTTTTACACGGATGGGATTTAATTATACTCAAGGACTGTTATGATGAAGAACGACGAAGTTGGCTTTCTAAATAAATCGGTAAACCTAAAATTTCACGGTAGTGGTTTTGGTTATTTTAAAATACACATTGTTAATTTAGTGCTAACTATTCTTACTTTAGGTATTTATAGTGGTTGGGCGATAGTACGCTCAAAACGTTATTTTTACAGTAATACAGAGATTTCAGGAGCTCGCTTTTCCTATCAGGGTTCTGGTGGTTCTATTCTAATTAGTTGGCTGTTTTTTATTTTTCTGTATGTTGGTTTTGTTCTTGCAGTGAAGAATC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 95156-96143 **** Predicted by CRISPRDetect 2.4 *** >NZ_SITH01000055.1 Obesumbacterium proteus strain PCM_1204 744, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 95156 28 100.0 32 ............................ TATGCAGAATAAATACTCGTTACTAATCCCTG 95216 28 100.0 32 ............................ ATCCTTGAACCTTGCGTAAATGCATCATTGAG 95276 28 100.0 32 ............................ GTCATCACAACTCACAACGTAAAGAGCGCTAT 95336 28 100.0 32 ............................ ATTACAGCAAAAGACAATACAGTCACCATCGG 95396 28 100.0 32 ............................ ATTGGTGATGCGCTTTCAGAAACGCACCAGTT 95456 28 100.0 32 ............................ TAAAAAACCCCAGCAAGGCGCAAACAGTCATA 95516 28 100.0 32 ............................ ATTGCAGGGAGATATAACAATCTGTTTTTTAA 95576 28 100.0 32 ............................ ATCGCAAGCCAGCTATTCATGACTTTTTTAAG 95636 28 100.0 32 ............................ TGTAAGCGATCCTTACAAGCCCGCTAATTATT 95696 28 100.0 32 ............................ AACTTGCCCGTATTGGTTTTCCAGATATGCAA 95756 28 96.4 32 ............G............... AGTGAAGATAATTCAGAATCTTTATGCTCAAC 95816 28 96.4 32 ............G............... ATATAATTAACTCTGCTGGGGTCGATACCCGC 95876 28 100.0 32 ............................ CGTTTGAGAGCCGTGCGCCGCAAGGGCGTCAA 95936 28 96.4 32 ............G............... TTCATGCATGGGGTTTCATAAGCAACGCGCTT 95996 28 96.4 32 ............G............... ACCGAACATTTTTGCCCCCAATCCCGCTATGC 96056 28 100.0 32 ............................ GGTTCATGAAATCAGTAACCGTGGCTTGTACC 96116 28 89.3 0 .........................GCG | ========== ====== ====== ====== ============================ ================================ ================== 17 28 98.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGTGACTTTCACCGGCAAGGTACGCAACCATAATCTTGGCGATAACGTTAGCGCATTGACCTTAGAGCACTATCCTGGGATGACGGAAAAAGCGTTAAATGAAATTGTGGCAGAAGCCCGTTCGCGCTGGCCTCTACAGCGTATTTCTCTGATCCACCGCATTGGCGCAATGTATCCCGGCGATGAAATTGTATTCGTTGGCGTGACCAGCGCGCATCGCAGCATGGCCTTCGATGCCGCCGAGTTCATTATGGACTACCTCAAAACCCGCGCACCGTTCTGGAAACGAGAAGCCACAGAGCAGGGCGACCGCTGGGTCGATGCCCGCGACAGCGACCACCAAGCGGCAAAACGCTGGTAACCCCTTCTAACCCTTTTTTCTGCCTACATGCTAACTCATTGATTTTTAATCCCACCAATGAGCCGCGAGGAAAAAGGGTTAAATTCCCCAAAATGAGCTACCGATCTGATTAATCGCACCTTTCTGCGAATATTCTACA # Right flank : GTTATTGAGAGTTCTTTTAACTATCCTTCACTCGAAAAGTCGATTTTTATTGGCTCGCCGTTGTCATCGGTAATTAGGACGCGGTTCGTGAACTCAAAAACTTTTCCAACAAAAATTATATACACGCGCTTGTTATCGCACCTTATCTTGGCGTTTGGAGAGTCGCCAACAAGAACGGGGGCAGGAAGCTCATTTTTCATTTTATTATCCGTAGGGATGTTTTTCATCAGATAGTAGCTATAAAAATTGGGAACTGTTGCACCACCACTGTCATCTAAAATAATCTTCACATATACGGCAGAACAAATTTCATATGATGAGATTAATTTATTGTCTTCAGGTGAATGATTTTTGCTTGTGAAATAGAAATAAAATATAGCTGCGACAATAATAAAAAAAACCGATGTCTTAATAGCCTTGTTCTTTTGCATACCTAATACCTGCCTCTATCATCGTTTGATCTGCTGGATCATCGCCATATGGGTAATCTCCCCAGCAGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTGCAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 105509-106075 **** Predicted by CRISPRDetect 2.4 *** >NZ_SITH01000055.1 Obesumbacterium proteus strain PCM_1204 744, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 105509 28 100.0 32 ............................ GTTGGATGTACTTTCACGCCGAGGCGACCAGT 105569 28 100.0 32 ............................ TGTTTAGCCCATTTTTGTGATGCTCTTTCCGC 105629 28 100.0 32 ............................ ATCAATAAACGTTACGTAAAACGGTGAACCTT 105689 28 100.0 32 ............................ AGTCATATCTTCCCCGCACTCCGGGCAGTTAT 105749 28 100.0 32 ............................ AGCAAGCTGGAATAAATGGCAGGAGAATCACA 105809 28 100.0 32 ............................ AGTCATATCTTCCCCGCACTCCGGGCAGTTAT 105869 28 100.0 32 ............................ AGTCATATCTTCCCCGCACTCCGGGCAGTTAT 105929 28 100.0 32 ............................ AGCAAGCTGGAATAAATGGCAGGAGAATCACA 105989 28 100.0 32 ............................ ATATAGGGCAATACAAAACAGCATCAGCGGAA 106049 27 85.7 0 .....................CC.-..T | ========== ====== ====== ====== ============================ ================================ ================== 10 28 98.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CCAGAAAAAGTGGCCTATCGAACGGTTAGTCGCGTGCAGGTAAAAAGCAGCGCGGAGAGGCTGCGGCGCAGATCGGTGAAAAAAGGTTGGCTCACCGAAGAACAGGCTCGCCTGCAAATTCTCGATGCCAACGAACAAAGAACCTCGTTACCTTTTATCGTGCTAAAAAGTTTATCTACTGGGCAAATGTTCCATCTGTTTATTCGTTTGGGCGAACTGCAAACACAGCCAACAGCGGGTAAATTTAGCAGCTATGGCCTAAGCGCAATGGCAACGATACCGTGGTTTTAGTTTTTCATCCGCGTTGATATCCCTGCGCTCATCAACGGCGGGGATATGTTTCATCTAACGATCGAGCAAATCCAACGAACCCTTTTTTTGAGGACATATCTAAGTTGTTGATTTTGAATGCTAGCAACTAATGCGCAGAAAAAAGGGTCAAACCCACTCAAAGTGAATTAATGGTTTGATAGGAAAAGGTTTTTGGCTAATTTTCAATA # Right flank : TCATCTTCTGCCCCATTTTCACTATACTTATTTCAGTATTGCACCTTTGTTGCCGTATTCGAGCTAACTTTCGCTGAGGTAAGGAGCTAATTTGATTTGGTTTGAGCAAGGTCTTTATTTGCGGATTGAGGAGTTGGAAAATGGGCCACGGCCTTTGCCGCTGCGTAGCGGGTTTAGTCGTGAAATAGCTTATCGAGCGTTAGGCGTGTTTAATCCCTCTGAATCATCGGATGCTTACTACATATTATCTAACGATCGGGATGAAATATGGTTTATCTGCAATCGACACCTGCGAACGGTTGCGCTTTTACCTGACACTACTGATTTCAGGCGTCCAATTGTCTATTGAGTCTGGACGTGGTTGTAATTTTATCTTTTTTAATTTGTATATAACTTTTTGTTAAGGACGTTTGCGGTGCAAAAACTGCTCATTGTCACCTTGTACTCGAGTTATTTTCCAACCGTCCTGCCAGACGAGCCAGATAATGAGATGTTGCTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 180705-181092 **** Predicted by CRISPRDetect 2.4 *** >NZ_SITH01000055.1 Obesumbacterium proteus strain PCM_1204 744, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 180705 28 100.0 32 ............................ TTCTCTAGCAGTACGAACATCGTTGCCATGTC 180765 28 100.0 32 ............................ GATACGTCTTATCAAGTAGCTTGCACCGCTAC 180825 28 100.0 32 ............................ GCTCGTATGCAGAATGCGCGACAGGTAGCCAC 180885 28 100.0 32 ............................ ATACCCGACATGCTAGTCGATACATACGGCAA 180945 28 100.0 32 ............................ TGTAGATAGATACCGATACCGCTGAACACAGA 181005 28 96.4 32 ...G........................ GCACTCACACATCCTCTAGATTGGCATGGATA 181065 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 99.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTCATCGTTTTGTTTCCGTATCAAATCAAAATGTATGCGGCCACCAAAGACGCTAACCTCGGGTGGCAGCTCAGGCGGGGTTAGCGTTACCGGGACATACGGAAAACCGGTGCTTCAGTCGAAGCCCCCACCTGAGCCACCATTATTCAGAGTGGGTCAAAGCGTGTGGCATTATGTCATAACGCCGACATGTATGTCTGGTCTGGAACGCTAATTCCGACTACGGATTTTTCCGTAGCCAGAAAACTATATGCTTGTGATTTCAACAATGAAACGGGCTGGATGCACTTACAGTGAGTTACTGTTAGATATGGAATCAACTTCTCGGAAATGAGGGGGTAAAATGCAAAAAACTTTATTTTCCAGCCAACCCTTTTTTTTTCGCCTGCCTATAACCTATTGATTTTATATAAGTGTTTATCGGGAACATAAAAAAGAGTTATGCAGTGAAAAATGAGTTACGGATCTGATTATTCGACGCTTTATGCGAATATTCTACA # Right flank : AGTCTGCGTGGGTTTCTGCCCGAGGGACAAAACACTGGAATATAAAATCGAAATTTAAAACTCACAGGGATGGATAAGATGATTAGATTATTGATATTACTATTTTTTATTTCTTCACCAGCCCTTGCCGTCAGCGATATTAACAATGCCACAAAGGTGGCTCTAGAATTCAATACATGGTATCTGCAACAGATTGAAAAAGATGTCTATCCGCTGCTAGGAAGTCGTAGCCCAGAAATGAGTGAATACGTAACCGCAGAGACGTTGGGAAAGCTGCATAAGGCAGTGAATAGCGATGATGAATTCTATGACGCCGACTTTTTTACTCGCTCACAGGACATTGGGGCTGATTGGCCGAAAAATGTCACCGTGGTTTCTTCCGATCTCGATCCGGTTTGCCTGAATGTTTACGTTGCTTATGGGAAAGATATGTCCCACACGGTCATTGACTGTATGGTGAAGGAAAAAGGGAAGTGGAAAATCCAGTCGGTAGCGCAGCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //