Array 1 338128-337080 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABFUX010000002.1 Pectobacterium polaris isolate Pectobacterium polaris IPO_3841, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 338127 28 100.0 32 ............................ CGACACCAAACGTCCACGGATGGACGATCACT 338067 28 100.0 32 ............................ ATGGACAGGTGCGGGTGATGCGACATTAATAT 338007 28 100.0 32 ............................ TTGCCCAGCAGGTCACCTACAACGATTTCGCG 337947 28 100.0 32 ............................ CCGAGCTTTCATGATTAAAAAACGCATGGATG 337887 28 100.0 32 ............................ TGAACTAGTAGTAGCCCAGCGATTAGACGTAG 337827 28 100.0 32 ............................ TGTTGCCCCGGTTCAGGCCCGGGGAATTTGAT 337767 28 100.0 32 ............................ GTTGAGGTTTAGGCTTAACAGCTTATTAGCGT 337707 28 100.0 32 ............................ TTCAACCTCAACTAGCAATTTAATGAAACGAG 337647 28 100.0 32 ............................ ATTGAGACAGCAACTGCCCCTGGAATGGTTTC 337587 28 100.0 32 ............................ ACATCGTTCAGCTTCTTGCGAGTACGGGCTAT 337527 28 100.0 33 ............................ GTCTGGCGTCAATTCCACTGAGCAAAAAATCAT 337466 28 100.0 32 ............................ GATCGATTTAGCCCAACTCGCGATTAGCCTAA 337406 28 100.0 32 ............................ GGATTGTTTAACACTCTGACGTGGTGAGTTTT 337346 28 100.0 32 ............................ AACGGGAAAATATACGACGCCCAAAAATATGG 337286 28 100.0 32 ............................ TCGCATCCATTCGTACGGGTCAGATATAGAGT 337226 28 100.0 32 ............................ ACGGCTCAGGTTAAAATCACCTGGGTTAAAGT 337166 28 100.0 32 ............................ GGCACCGTGTAAGGCTGGCTTGCGGGTTCAGC 337106 27 82.1 0 ...........TG.........-...TG | ========== ====== ====== ====== ============================ ================================= ================== 18 28 99.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CTTAGAAACGACACCAAACGTCCACGGATGGACGATCAC # Right flank : CTTATCAGAATGCGTCGCTGGCACAACGCATTTCGGGAGTTATTCCCCGTTGAGCGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGATGTTCGCACAGGTAGATTCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGAATCATCAGGCTGTTGCCGAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATAAGTATGACGGTAGTACGGTTCATCCTCCGGCACTAAACGATTAAAGAAACTCTCGAAATCTTGCCGCACCGTGGGATCGGCATTCTCATTAATCGTTAGCGCCGCCGAGGTATGTTTGATGAACACGTGCATCAGCCCAACGTTTATCTGGCGCAGAGCGATAATCTGCGCCAGTATTTCGTCAGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCAGATTTCATATTGTGCCCACATCGCCGCCCCCTGCTATCAGGCTTCGCGTGCCAGAATCGGTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 115687-115954 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABFUX010000005.1 Pectobacterium polaris isolate Pectobacterium polaris IPO_3841, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 115687 28 100.0 32 ............................ ATCGTCGGGATCGACGTATGAACCGGTACCCA 115747 28 100.0 32 ............................ TACTACGGCCATCACGACCCATTGCAAAAACT 115807 28 100.0 32 ............................ GCTCGCGCACATGGCGACAAGACCCCGACCTG 115867 28 100.0 32 ............................ ATGCGCGATTTTCTCAATGCGAAAGAAGAGAT 115927 28 82.1 0 ...........AGC......T.A..... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 96.4 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TTCAATATTGGCAGGCGTATGAAAACGAAGAGCTGATACTTTCTCCCATGCCCGGCGAACTGTATGTTTCCATGCTGGTAGGCGCAGGCATGACCGCCATCGGCGTTGTGAAATATCGACACGCGCGGCGCAACCCAGTCGCTCCACGTCCAACGAGTGCTAAAACAGTCGCCGCATTGTTGCTGATCGCGCTTTATCTGGCGCTTCCGCTACATCTCTACCTGCGTGAACCTCTCCCCTACTGCGCTTTCAGCCCCAGCGGTCAGCAGTTAACGGTATGTCTGGGAGACAATGACGAGCGGATTATTGTGGAGTGATGGGGATTGAATCAGATGGGGTGGAGAATAAAATCTGTAGCGAGTTTCTTCTCAACCCTTTTTTAACGGTTAGTCGTAACTTACTGATTTTTAACCACCCACAACCGAGACTATAAAAAAGGGTTTTTCTGAAAAACAGAGTATTCTCTTTAATAATCTGATAATTAGCATAAAACTTTTACG # Right flank : AATAAAACGCCGCAAAAATCAGCAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCTGATACTGTTTAGGAAACGCGATGTACCACATTGATGACTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGTCGCATCGCGCTAGAACAGGCGCAGCTGATTCTCGGCTATCATGCCCGTCTGTCGCCGAACGCGGTCGGGCTGGAATGTCTGGGGTTGATTGAGGTGCGGTTGATCAACCACACCAGCGAATACGTTGAGCGCTTTCATAACATGCTGGGGGAAGTGGACGCCATCATCGACGCCTATAAAACCACGGGTGATGCCGATTATCTGTTAAAAGTCGCCGTGGCAGATCTGCCCGGGCTCAGCACGCTGATTAGCCAGATTCTGTCGCAGAATAAGAGCG # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 127011-122302 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABFUX010000005.1 Pectobacterium polaris isolate Pectobacterium polaris IPO_3841, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 127010 28 100.0 32 ............................ ATCTGGCGGATACATAAACTGCCAGACAGGGT 126950 28 100.0 32 ............................ ACTACGGTTAAAACAAAGAATATAATGGATAT 126890 28 100.0 32 ............................ ATTTCAAACGGCGCTGATATCGTGCAGGGAAA 126830 28 100.0 32 ............................ TCAAAATATGGGCGCTGAAAACCTGCCTCTTA 126770 28 100.0 32 ............................ TGCCTGAGTGTTGGCCAGTTTGTTGCGGTAGA 126710 28 100.0 32 ............................ TAAAGTAGACGAGTAATGTAGTTGGTTCCGTC 126650 28 100.0 32 ............................ GCAAAGATAAAAGCAAAGGCCGACGCGCTGGT 126590 28 100.0 32 ............................ ATTGTGCTTATACGTGGTGAGCAATCCATAAT 126530 28 100.0 32 ............................ CGGAAATTCTCGATGCGGTATTGCGTGGAGAG 126470 28 100.0 32 ............................ ACTCTTCACCGGCCTGCACGCCGTCCACGGCC 126410 28 100.0 32 ............................ GCTCTTTAAAAACTTGCTTGCTCTTACAGTTA 126350 28 100.0 33 ............................ GTCATAATACCCATGCGCAGCAACGGAATTTTT 126289 28 100.0 32 ............................ GCTGCGGCTTGCATTGCCATTAGAGCGGGCTG 126229 28 100.0 32 ............................ ATATTAGGCCACGGTTTTAAAGTGAAAGGGGA 126169 28 100.0 32 ............................ AGAAAAAATCTTTGGGGTTTTCTCCCCGCGTT 126109 28 100.0 32 ............................ ACCGACAAAGGGCTCAAACAGCCGATCACCCT 126049 28 100.0 32 ............................ AGATTTATAATGGTTCGACAGTTCCATTTGAA 125989 28 100.0 32 ............................ GTGGATATTAGGAGGCGTCGGCGGGTTGTGGT 125929 28 100.0 32 ............................ AGAATATCCAGCAGCAATTGAACGCGAATAAC 125869 28 100.0 32 ............................ GCTCGGTTTTGTTTGGCTATTTGTTCAGGCGA 125809 28 100.0 32 ............................ TCAATGCCGACCACATCATTAATTTCTTTCAT 125749 28 100.0 33 ............................ CAGCGTCGTTGCCCAGAAATTCTTATCGCCATC 125688 28 100.0 32 ............................ GTCAACCCCGCTATTTGTGTTTGAGCGTCCAG 125628 28 100.0 32 ............................ ATTGAATCGAAAGGAGTCGCCCGCCTAGCCCC 125568 28 100.0 32 ............................ CGAAGACAATAACGCTTTTTACACGCCTTTTT 125508 28 100.0 32 ............................ GATAACACTTACGCTAATTTGCAGGCGGGCAA 125448 28 100.0 32 ............................ TATACCCACACGTCCCAGTGAGTCAACGGGTT 125388 28 100.0 32 ............................ TCAAGGGAACTGCTGTTGGGGTAGTCAAGAAG 125328 28 100.0 32 ............................ GTAGAAGAGCTGCCAGCGAAACAGCAGATCGT 125268 28 100.0 32 ............................ CGTCGAATTGTTGACGCTGTTAACGCCTGCTC 125208 28 100.0 32 ............................ ACATGCCTGATATGGACGCCATTCAGCTCCAA 125148 28 100.0 32 ............................ TCGGATACGATTTTCTCGCGGAATTGGACAGC 125088 28 100.0 32 ............................ TTCAGGGAGTTCATCGACACCGATAAACCAAC 125028 28 100.0 32 ............................ TGGTCACGGCTGGGGGCATGGCCATATCGAGT 124968 28 100.0 32 ............................ AGGCTGGGTGCGCGGGTAACGCCGGATGCATG 124908 28 96.4 32 ..............T............. AACAACAAGAACAACGCAGAATGCAACATGTC 124848 28 100.0 32 ............................ GTGTAGCTGAGGCGCAGGTAGCGCTCCAACTT 124788 28 100.0 32 ............................ TTGTTGTCAGCTCCAGCCGTGGGATATGGGCT 124728 28 100.0 32 ............................ ATCAGGAAAGGATCAGGGATCAGGGAAAGGAA 124668 28 100.0 32 ............................ AGAAACTTCAAGCGCTGAGTGAATTCACCCTG 124608 28 100.0 32 ............................ TCATTGACTGGCGCGTCACCCAACCAGGTTCT 124548 28 100.0 32 ............................ GCGCTTGATCATGTCGTTAATTGCAAATGCAA 124488 28 100.0 32 ............................ TGAGAAATCAACATTCCATCATCATCGCAACA 124428 28 100.0 32 ............................ TCAATGCTGCCGATGAGTTGGTTCAGGACGAG 124368 28 100.0 32 ............................ ATGAACCCGGCACATGCGGCCGACGCGTCAGC 124308 28 100.0 32 ............................ TCCGGGCTGCTTTTTTTATGCCTAAAAGAGAG 124248 28 100.0 32 ............................ GTCTACTTTCCGGCCTTCGGGGGTTCTGCTGA 124188 28 100.0 32 ............................ AATCCTCACCGGCCTGTACGCCATCCACCGCC 124128 28 100.0 32 ............................ TGTAAACGATTCTTCGATAACGGCGTACTGGG 124068 28 96.4 32 ...........T................ AAAGGTAAATTCCGGCACCCATGCCAGAATCT 124008 28 96.4 32 ...........T................ TTCGGGTGTGATTTCTCGCTGGGATGGAACGG 123948 28 96.4 32 ...........T................ ATTTTATCGCCGCGGTGGAAGGGATTCCCCGC 123888 28 96.4 32 ...........T................ TGCGCTGTCCGTTCAGGTAACAGAAAAGGGCG 123828 28 96.4 32 ...........T................ GGGAGACCAAAGTGAATGCTTTGGGGTGTGGT 123768 28 96.4 32 ...........T................ AGCGATTCTGGCGATGTGTACTGTCCGGTTAA 123708 28 96.4 32 ...........T................ ATTTCACGCAGCGGCCCCAAATCCTCGCCAAC 123648 28 96.4 32 ...........T................ CTCGACCGTTGCGGCTTCGCCGCTCATTGCAC 123588 28 96.4 32 ...........T................ CGCAGTTTGTCCCAGATCAAAGCAACCCACAG 123528 28 96.4 32 ...........T................ TTGTATCCAGTGCTCAGGCCACGCAGCATTGA 123468 28 100.0 32 ............................ ACATTGGCACGCTGTAGCGCAGCGCTTCCAGC 123408 28 100.0 32 ............................ AGTCGGTACAAACGTTGTGATTGGGTTTCTTG 123348 28 96.4 32 ...........T................ GGACACCTCCGGCAAGTTGGTCGTGTTTATTG 123288 28 92.9 32 ...........T.C.............. TGTATCAGGATGCAACGCGCAGCGATGAGTTA 123228 28 92.9 32 ...........T.C.............. GGACGCTGGGACGCGCATGCCGCCGCCAATAT 123168 28 100.0 32 ............................ GTCATATCAGCATGTCGCGGATCAGTGCGAGT 123108 28 100.0 32 ............................ AGCGCGGAGGTGATGCACGGCCTGATTAATGG 123048 28 100.0 32 ............................ ATGCCAACAGGCTTGTTGGTGCGCATCAGTGA 122988 28 96.4 32 ...........T................ ATCCGCTATTTGGATAGCATGGAATTGCAAGA 122928 28 96.4 32 ...........T................ TGAAGGCGCTGACTGTGATTTTATGCGCTGAC 122868 28 96.4 32 ...........T................ AGTTGGGCGCGGAGTGATAGCAGTTCAGAGGC 122808 28 100.0 32 ............................ ACCATCATCAGCGACCCACGACGACAAGCAGC 122748 28 92.9 32 ...........C.C.............. GCGAGTAGACAATCTCGCCGTCGTCATCGTCC 122688 28 96.4 32 ...........C................ GCATGAAGCTGGTTGCCAATGGCACCTGTTTT 122628 27 89.3 32 ..........C-.C.............. GTCACGGATAATGCACATCGGCGTAGTGTGGG 122569 28 92.9 32 ...........C......C......... GTTATAACTCCAGCCGTGGCGCTGAACGATAG 122509 28 92.9 32 ...........C.C.............. TTGCGTATAATCTTGCAGTTCGTGATGAAGCA 122449 28 100.0 32 ............................ CATCCGCTGCCAAGTGCTTTAGATACCTGACC 122389 28 92.9 32 ...........T.C.............. TTAACGGTATTTATGCGGATAGAGATAAATTT 122329 28 75.0 0 ...........TGC......T...TCC. | ========== ====== ====== ====== ============================ ================================= ================== 79 28 98.3 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : GCGTGACGGAAGTGCCAGTTCCCAGCATGACAACGCTGGTATTGGCGATGGGGATATTCCAGTACAGAGACTGATTTCCTTCTTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGCTGAAGGTAATAAACATTGGCGCGTTTGGAATGCAGAATCGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAAATAAGTCGCAGGCTAACTATTTGATAAGAAGAAATATAATCTTCAGAAAACTAACGAAAATCAGACTATCACAAATAGTTTGGGAAAATGGTGGCTGCAAAAAATATTACCCAGACGCAGACCCTTTTTATTTGGCCTATTTCACAAGATTAAAAATCAATGAGTTACGAAAGGGCGGAAAAAAAGGGTTTTTGCGACGAAAACGGCAATTGCTGCTAATAAAACAAATCGTTAGAGTGATCGGGCTACG # Right flank : CGGGTTTAAGCGCTATTGTCTGGCTATTATTGAGGTAGCGTTGCGCCAAGTGCTCAATGCGTTTACCCCTTAAATAACGCATATTGATGACCTTCTTTCGTAACGTTTTTAAGTAATAAGTTTCTTTTTAAGGGAATGAAAAATTGTGGATTGGGTATTATTAATATTTTAAAATCATCATTTTTCCGTTAAAGTGCCCTTACAGGGAAATAGTGCGTTGACTTAAGTAAAATTCAAGGGAGTGAGTAACTGTGAAATACGATCCCGTTTTAAAAACGCTTGTGGATGATGACTATCGGTTAGAGGATCATCTTGATTTTAAAAAGCAGCATGCAGATATTAACTATCAGAAATTACATGCTCAACTAAATGAAATAAATAACGATAACATTCATGCCATATTGACTGCGCAGGAAGCGACGTATTTTTTAAAGACGTTATGCACACCAAACCCTAATGATTCGTGGAAAACGGCGATATTTGGCTGTGCCGATCCTACT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [20-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 135593-135921 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABFUX010000005.1 Pectobacterium polaris isolate Pectobacterium polaris IPO_3841, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 135593 28 92.9 32 ...........T...A............ ACCTGACATCGAAACTCGACCCTAAGCGCCGC 135653 28 92.9 32 ...........T.....T.......... TCTACGAATTCTAGGTCAGGTGCCGAGATAAC 135713 28 100.0 32 ............................ TAACAATGTCATTACCCAATTATTTGCGTGGG 135773 28 89.3 32 .C.........TG............... TGTGAAGATGCCTGAATTTATCAAAACGGGGT 135833 28 100.0 32 ............................ CACGCGCCTTGATTCAACGCCGCTTTTTGTGT 135893 28 89.3 0 ...........T.C..........C... | A [135916] ========== ====== ====== ====== ============================ ================================ ================== 6 28 94.1 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGGCACTCTCTACGTTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACACAGGTTTCCGCGTGTAAAGCCGTACCTGACGGCGTGAAATTTCGCACCGTGCGCCGCGTTCAGCTCAAGAGCAGCGCTGAACGGTTGCGTCGACGCTCAGTCAGCAAAGGCTGGCTAACGGAAGCGGAAGCCGCAGCACGCATTCCCGACGCGGTGGAAAAACGCAGCGCACTGCCGTTTGTACAAATTAAAAGCTTGTCCAACGGGCAAATGTTTTTCGTGTTTGTGGAACATGGCCCGTTACAGGACGCCCCCGTCGCTGGCCGCTTCTCTTCCTACGGTTTAAGCGCAGAAGCCACCGTTCCCTGGTTCTGACCCTTTTCTGGCGACCGGCTGCAAGCTATTGATTTTTAATTGCGGTTGGTCGCCCTAATAAAAAAGGGTTTTTCGAGAAAAAATCCATATTCTCTTTCACAATCTGGTGGTTAGATTAAAAACCTAACC # Right flank : ATATCAGGACTTGCACTTCGCCAGACATCATCCGGTCAGACTGACCGATTAGTTAACCCAATCTTCCAACGTCAGCCCCTGCACTCTTTCAAACTCTCTTAGATTATTGGTAACCAATATGGCCTTAGCGCTGATGGCATGACCAGCGATGGCCGTATCATTTGGGCCAATAGGCGTGCCTGCGGCGGCTAACGCAATTTTGATTTTCGTAGTGGCGTCTACTGCTGCGCTATCCCAAGGTAACACCGCATCGAGCCGACGACAGAAAGCATCGACTAGTTGCATATGGCGTGGCGAGGCCTTTTTTCCAACCGCCCCGAAACGCATTTCAGCGTAAGTGATGGCAGAGACCACGATCCGATCACGCCGCAATGTGCACTGCTGTAGCTTGTCAATCACCGCTGTCGGGTGTTCACGCATAATGAAGGAACATATATTGGTATCCAGCATGAACAAGCGACTCACAGTTCGAATCTCCCCTCTTCGACTACATCCTGACG # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 136911-137478 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABFUX010000005.1 Pectobacterium polaris isolate Pectobacterium polaris IPO_3841, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 136911 28 100.0 32 ............................ ACGATGGGCGTACCGTCTTATTTGCTGCCACA 136971 28 100.0 32 ............................ AACAGGCCAATTTCCCAACGCTTGATGGCGTT 137031 28 100.0 32 ............................ ATACGGCACACCAAAATATTGCACTGCTAATA 137091 28 100.0 32 ............................ ATATACGACGAGCGCAAGTTAGTTTCATAGAT 137151 28 100.0 32 ............................ ATCCAGCCCCGTCCAGTACCATGATAATAGCG 137211 28 100.0 32 ............................ AATGAAAACCGTGAATTATTTGGTTCCCGCAA 137271 28 100.0 32 ............................ GTGATAATGAATCGTCATGCGGCGTACTCCAG 137331 28 100.0 32 ............................ CGACACCAAACGTCCACGGATGGACGATCACT 137391 28 100.0 32 ............................ CGACACCAAACGTCCACGGATGGACGATCACT 137451 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 10 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CATCCTGACGTTCTGTCATAAAGTCAGCGTCAGCGCGCTCTTCTTGCAAAAATGAATGCCAATTGGGTTTAACCGGACGCAGCATGATGGTATCCCCCTCACGCACGATCTCCAGTTCGTTGACCCCTTCAAAGTCCATATCACGCGGCAAGCGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGATGCACCTCCTCCTTCATATAAAATTCAGCCAGCCACTTACCATTTATTATTGCTGGCTAAAACATAAGCTAAGTATAGATATTAATCTCTCGATTGCATATTCCTAGCATATGCAGATACCTAGTATAGGCCTATCGACGATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTTACGCATCACCGTAACTCATTGATTTTTAATTTTGATTACCTGCCCTGATAAAAAAGGGTTTTTCGGGAAAAATGTTTTATTTCCTTTTAAAATTAGGCAACTACCGTAAAATATGAACG # Right flank : | # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //