Array 1 7202-5383 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASWG010000003.1 Listeria marthii strain FSL L7-0515 NODE_3_length_463037_cov_22.019257, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 7201 36 100.0 30 .................................... TGCGGCAGGTGCTCTTGATGACGTCGTGCA 7135 36 100.0 30 .................................... TATTTAACCGTTCCGAAATTATTGTTGATT 7069 36 100.0 30 .................................... AGAACCTCTTTGCGAAAGATGTTTAAGTGA 7003 36 100.0 30 .................................... TGTGGACGCGCATTCGTTTGTTGGCACGCG 6937 36 100.0 30 .................................... AAAAGAGCATTATAACAGGCTTGTAACAGC 6871 36 100.0 30 .................................... TACCTTGTCCAGCTAAACGAAGGCCCATAT 6805 36 100.0 30 .................................... AAGTATTTGATTTACCAATGCAAACAGATG 6739 36 100.0 30 .................................... TGACAATATTGGAGCCATTCTTAAACCTCA 6673 36 100.0 31 .................................... TTAGCGCTGGGTACATTTCCTATCTGACCGA 6606 36 100.0 30 .................................... TTGGGATTGCACCAGCTAAAATGATCGCAG 6540 36 100.0 30 .................................... TACTCCTCAAAGCTATCATATCGCACCACA 6474 36 100.0 30 .................................... ATATGCACAGGGTATATGTGGCGTATAATG 6408 36 100.0 30 .................................... ATGTGGAGAAGCGTACGCGTTTTGTTCGTA 6342 36 100.0 30 .................................... CAGCAATAGCGGTACCGAAATGTGCTATTT 6276 36 100.0 30 .................................... AGCTTTTGAGAGGTCCACACGTACTTTAAC 6210 36 100.0 30 .................................... GTTATGAAAGGCGGCATTCAAATTGGTAGA 6144 36 100.0 30 .................................... TTGTAATCATCTTTACTTCTCATATATAGG 6078 36 100.0 30 .................................... TATTTGTAACGTGGGTGTACGTGTGTGACA 6012 36 100.0 30 .................................... TCGAGCGACTGGAGAAAATGGCGGGCATTA 5946 36 100.0 30 .................................... TTACTTTTTTTTCGAACAGCATATCTTCTT 5880 36 100.0 30 .................................... TCCTGCGTAATTCTCGCCAAAGAATTACGT 5814 36 100.0 30 .................................... AAGACGTTCGAGGAGTTCAGCAGTTACGTG 5748 36 100.0 30 .................................... TGTGCGCAATAATGAAATGAACTCCGGCCG 5682 36 100.0 30 .................................... GTAAAACTCGTTAACTGCACATCAGCCTCT 5616 36 100.0 30 .................................... AAAGAGTAGATGATGTCTATAAAGAGCGTG 5550 36 100.0 30 .................................... AAATATGTGATGATGATTTAGAAATCGCTA 5484 36 100.0 30 .................................... CCGTAGTTATAAAACCGCTCTAGACTTCTA 5418 36 91.7 0 ................................T.TA | ========== ====== ====== ====== ==================================== =============================== ================== 28 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Left flank : TGACAAGTTGTCTGCAACAATTAGCGAGTTAATAGGCTATGAGCTATTGGAACATGAACTGGATTTAGAAGAAGATGAAATTACAGTTATTGAATTATTTAAAGCGTTAGGAATAAAAATAGAAACTAAAAGCGATACAATTTTTGAGAAATTAATTGAAATTGTACAAGTCTATAAATATTTATCAAAGAAGAAGTTGCTAGTTTTTATTAATGTATGTGCTTATCTTACAAAAGAAGAGTTGTTAGAATTAAGAAGGTATATTTCTTTGTATCAAGTAAAAGTTCTGTTTATTGAACCTAGAAAAATAGACGGCTTTCCGCAGGCTATTTTGGATCCGGATTATTTTCTGCATGTGGAAAATGGTGTTTAAGGGCTGGACGTTCTTTGAAAATAAAATATTATTTAATTAACTTATTAAGCAGCATTCAAAATCGAAATCTTGCTATGGATAAGTAGCGCGATTACGGAATCTTGGAGGATAGAAAAAAATCTACGAG # Right flank : AGAAATAAAATCTTTCACATCAAAAGTTCTCGATAGCCTTTAACAAGAACTATAAAAGTTCAAAAAGGAGCTAAACCAACCACATGACACAATATCACTACCTCGCTTCAAAGTCGCTCCTACAAAAAAATGAAGATAAGCTTGCTTCCCCTTTCTTCTATATAAACGATCTAGATTTCTTAAACTTAAATTTCGAAGCAAACATCGACCGTGATACAAATGGTTTATTCTCCTATTCAATACACTTCAACCGAGCTTGCAAATTTCAAATTGCCATAAGTGAAGGGGAATTACCGTTAAAAGACGAAGTGCAAAATAACAATTACGAATCTAAAAGTTTAAAAATCTTATACGATTACATTATAAAAGCGAGTAAAGAAAGTGATACACTTGAACTATATACTTCGTGGAACGGCGAGGAGAATCTTCCTTTAACGAATAAAACAGAATTATCCATAGAGAATTTAACTCTTGAAAGCTTGATTTTGAGCGACAGAGAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 248641-249059 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASWG010000004.1 Listeria marthii strain FSL L7-0515 NODE_4_length_390353_cov_19.209006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 248641 29 100.0 35 ............................. AGCTGTTATGCGTAAGGTTGTTGCAATACTATAAA 248705 29 100.0 36 ............................. CTCTTCTATTTTATTACCTTCACTGTCAGATAGAAC 248770 29 100.0 36 ............................. GGATATAAGCTGCTAAGAGTAAGTAAAATTGTTATG 248835 29 93.1 36 .......T......T.............. CTGAAAAAGAATGGGAAAATCTTCAATTTATCATTA 248900 29 100.0 36 ............................. GTGATAATGTCGACACGTCCGATAGATCGAATAACG 248965 29 89.7 37 .A.....T......T.............. AGTTTAGATGCTTTGCTAAATCAGAAAGAGTTCATTA 249031 29 96.6 0 .......T..................... | ========== ====== ====== ====== ============================= ===================================== ================== 7 29 97.1 36 GTTTTAGATACTTAATGTGAAATGTAAAT # Left flank : TGCCACCACTTCAGCTGATATTTTATTAGAAAAAGGTGCCGTAGAAGTCATCGCTTGCGCAACCCACTCCGTCATGGCCGGAAACGCAACCGAACGTTTACAAAATTCAAGTATCAAAGAAATCATCACATCTGACTCTATCGACCTTCCAGAAGATAAACAATTCGACAAACTAACAACCATTTCTATCGGCCGTATCTTAGGCCGCGCAATCGAAGGCGTTCAAGAAAATCGTTCGTTGCATCCGTTGTTTTAAGGGATAAATCAGAAAACAGTAACTCTTAGGGTTGCTGTTTTTTTGCGTTTGGTTGTTTGTCGACCTTTGGTAGCGTGAAAAAGGCTGGGGATCGACAGAAAGTTGGGAGTGGTTGGGATTAGGGGAGTTTGGTGGTTTTTGGTTTTAAAAATCATGTAGAGAAGGGTGGGTTTTCGTTGGTTTTTAGCCGGTCGACAGAAATAGGCTTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TTAATGTAAACTTTCTTGTGGGATTCCAGCTGTTTTCGGTTTTAAAGTACAAGGAATGACATTATAAATGTGAAAAGAAAAAATCCAACTATATCCACACCCAAATCATCCATATAATCAAAAAAAGCGTGACTGCCAAACTAGCAGTCACGCTTCTTTTCAATCATTAAACTCTTTCAAAACGTCCTCTTTAATTTCAGTATAATTTTTTACTTCCTCTTCCTCTTCGGAAATAAAATTATATGCTTCCACTTCTCCTAAATTCTCAAAATCCGAAAGAGTAGCTCCCGTTTCTTTCAAATCTTCATTAAATTTCCCGTAGCTCATACTAATTATCGAACTTAGTTTTTCACTGTCATGTCCACCGCGCAAAAATAACGTATACTCTTGCTCCTTCTCAAGCGCGATATAATTCTCAATAGATTCATACGCGCCTTCATTTAAATACCAAGGTTCTGAGACATCAATTTTGTCGCCTTTTTTGAAGGTGCCTTTATAAG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATACTTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //