Array 1 34736-34288 **** Predicted by CRISPRDetect 2.4 *** >NZ_LOIC01000020.1 Photorhabdus namnaonensis strain PB45.5 Phpb_contig000020, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 34735 28 100.0 32 ............................ TTAGCCCGGTCCGGCTATTCAGGACAATAGCA 34675 28 100.0 32 ............................ GGAAATCCATCACCAACAACTGTAATTTGTGA 34615 28 100.0 32 ............................ TTCTTAAGCCTGTAGCCAGTGCAAATCTAACG 34555 28 100.0 32 ............................ TGCTTCCATGCTTTATCTCGACATCTTCGGAT 34495 28 100.0 32 ............................ GGATGAGTCAGAACTATACGAAATGGTGATGG 34435 28 100.0 32 ............................ ATCAGGAAAATTTTTGGCATCAAGATAATGCA 34375 28 100.0 32 ............................ CGCGACGACATGCTAGCTATGCACCGCGTGCC 34315 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 8 28 100.0 32 GTGTACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGGTATTGATAGTGGTCGTGGAGTTTTAACTCACCAGGGGGATGCTATCAGAAATATTGAGGGTTCATTTCCTGGGGCAATAGCATCAAACTATCATCTGGCAACAAAAGGGGCTTTTTATGCTAGTGAAACTCTTGGAGTGGGTGTAGATGGTAATCCTAAATCAGTGGATCATTTTACCCGGGATGCTGTATACACTGCATACGGTTTTGGGTTCGCCGCATCAAGTGTTGTTCCTGTGGCCTCAGAGAACCGCCCCCGCAATATAGCATTTAATTACATAGTGAGAGCAGCATAATGGCTGAACAAAAATACCGTTTAAATCAGAAATAGAAGGGGATGGTGTTCCACTTAAATGGAGGAAGTTTTGACCCTTTTTTAACGGCAAAGTTTAATTTATTGATTTTTAAATAAATATTATTTGCTCTGTAAAAAAGGGTTTTTTATTTTTTATAATGGTTACTCTTTAACATTCAGTAGATTGGGGTTAATATGCAACA # Right flank : TCTAACGTTCTCACTTACCGACTGGTTTTCAGAACTGGCGGCTCAAGTGTAGCGATGAGAACAATGAATGTGTGTTTTATAAACATAGGGATTCCTGTGATATTCCAGAATACTGTCGTTTAGATGTTCGTGTCCAAATGCAGGAATATTCAGTTTGGAATTTAAAATAAAAGAAATTGCAGGAAAAGATAGAAAGAATAAGAACAAAATAGTTTCCAGATATTAAATATAAATGGTTTGGATATATTTTTGACTCTAAGATATTTAATTATTTATTGCTTACAATTATATAAAAACGGTCAGTCTCCTAATAAATAGGAATGCTGTATTGCTTTTCTTTCTGAACTAGACTTTAATTTTAATAAATTACAGTCGGATTGTTTTTACAGTAATTAAATATGTTGATTATAAAAAATATTATTTTACTTAAGGAGTAAGTGCATGAGTCAAAAAAATGATTTTAAAGCTTTTTCTATTGGCAATAATGCTAATGTAATTAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 38733-38404 **** Predicted by CRISPRDetect 2.4 *** >NZ_LOIC01000020.1 Photorhabdus namnaonensis strain PB45.5 Phpb_contig000020, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 38732 28 100.0 32 ............................ ATCCTGATCAGTTATGTATATTGAAAACCAAT 38672 28 100.0 32 ............................ TAAAACCGTTCCTCGTTTCAATAATCCCACTT 38612 28 100.0 32 ............................ CGGATTCGGGCAAAAAAGTGCCCTTGACGGGA 38552 28 100.0 32 ............................ AACGACGTCGCCGTGTGTTTGTTGTCGCAAGT 38492 28 100.0 33 ............................ TTGTTAAAGGATCGTTTAGTTCAGAAATAAAGA 38431 28 78.6 0 ...A................T...ACTT | ========== ====== ====== ====== ============================ ================================= ================== 6 28 96.4 32 GTGTACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTCTTTAACAAGTAAATCTTAAATAAATGAAAATGTATTTTTAAATATTATTTTTTATAGAAATTATTTAATTCAGATATTTTTCTGAATGGTCAATGATAGTCGGTAATACTTACTTTTTTCCATAGTAACTACTGAAAGATCAGGCCGATATGAAGGATATATTGTTACAGAGAGCATCTGTATAAGGTAAAATTCAGATCTTACAGCCGTTATTACCTTATATCCCCATATCTCCGAATGGGAAAAAATCAATTTTGTTGAGTGATGAATGAGATAAGGTAGAAGATTTATTGAAACGTAATCGTCAGCTAAGAAAGTTGCGTCAGTGGTAACTTAAAAACTTGAGCCTCTCTTGACCTAATTTTTGACCCTTTTTTAGTAACCAATTTTAATTCATTGATTTTTAAACAAATATTGTTTTCCCCGTAAAAAAGGGTTTTTTATTTTTTATAATGATTACACTTTAACATTCAGTAGGTTGGGGTTAATATGTAACA # Right flank : CTTGAAGTTCTAGGTGTAGTTTAGAGTTATAAAAGCAAGGAATTTCTATCGAGTGATAAGACTGGAAATATTGGCCTCATATTGAGATTGGTAAATACTCTACCTCAAGGGGGAGGTAGAGTATAAATGAGCTTGAGTTTTAATTGAGGCTTTTCGCATTTTACATGAAGCTACGCAAGCTTTATCATAAATTTAATTACTTAAATTTCCTTATAATCCAACTTTTCGAATGAATTTATAGCGCTATTTTTCGATAGATTATAAATCTCCACTCCTTTGCTTATTGCTATTTCATGAGCTAGGTTGAAACAAGGAATGATGAAATCGTGTAAATTATTATTTAATTTGGTATCGAGTTTGTCATTTTGAGTTTCATAAAATCTTGGTTTTGAAAAATTATTCATATCTAAACCTGCGAAATATATTTTTTTATAGCCCAAAAATAACGCTATTTGTAGAGCAGAATATGCAACTGTTGTTCCGTTATAGAATCCGAGATT # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTTACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 136134-135926 **** Predicted by CRISPRDetect 2.4 *** >NZ_LOIC01000072.1 Photorhabdus namnaonensis strain PB45.5 Phpb_contig000073, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 136133 28 100.0 32 ............................ TTTTGTGAACAATCATAATATTACATTTTGTA 136073 28 100.0 32 ............................ TGGCACAGCAGAGGTAAGCCAGCTCCATTGCC 136013 28 100.0 32 ............................ AGATGAAACTCTATTGTCTATTGCTATGGAAA 135953 28 78.6 0 ...........T.........AGC.C.C | ========== ====== ====== ====== ============================ ================================ ================== 4 28 94.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAGCATTGAATGACTTGCAGTCTTTATCTTGGTTAAAAGGACTCAGGGATTATACTGAGGTGATTGATATCCAGCCAATCCCTCAAGAAACTAAATACCGTTGTGTCAGCCGAGTGCAGGTAAAAAGCAATGTTGATAGGATTCGCCGTCGTTCGATTAAAAAAGGATGGTTAACGGAGGAACAAGCCTTACAACGCATTTCTATCAGCAAAGAACAACGTACTCATTTACCGTTTCTGTACCTTAAGAGCTTGTCATCAGGACAAAGTTTTCCGTTATTTGTCGAACAAGGGACAATACAAAATAAACCGACGTCAGGAGTTTTTAGCTCGTATGGATTAAGTTCATCAGCTACCATCCCTTGGTTTTGACCCTTTTTTAGCGGCTAATTATAACTTATTGATTTATTTAAGGGATTAGCCGCTGCTAATAAAAAGGGTTTTTCTGCTTTTTATCATTATGTTCTTTAATAATCAGTAAATTAAAGTTAGTATCTAACA # Right flank : TCGATTGAGTGCGCTAAAAAAGCAATCTTTTTTCTTCTCGATATGCATCAATTGTTGTGCTTTTGTGCATATTCTTCACTATTAACCCATTGATGGTCTTTTTCCCAGGTAAATAACCACTTACGGGTTGGTCCGGCCATTACGTTGAGATAATAGTTGTCGTAACCGGCAATGGTTGCCACTGGGTGGTAGCCTTTGGGCACCATGACCACATCTTTGTTGTAAACAGCCATTGATTCATTTAGTTCACGGTCATCGGTATAGACGCGTTGCATGCAGAATCCTTGAGATGGGTTCAGGCGATGGTAATAGGTTTCTTCCAAATAGGTTTCCTGTGGCGCATTGTCAGTATCGTGTTTATGGCTAGGGTAGGAACTGGTACAACCTTCGTCGGTAAAGACTTCAACCACCAATAAGCTATCAGCAGGTTTGTTATCCGGTAGGATGTTGTGAACATAGCGTCGGTTGTAACCATTGCCACGTTGTTCTGCATCAATATC # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 153043-152236 **** Predicted by CRISPRDetect 2.4 *** >NZ_LOIC01000072.1 Photorhabdus namnaonensis strain PB45.5 Phpb_contig000073, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 153042 28 100.0 32 ............................ CCACACAACAATAAGGGCCTCACGGCCCTGTT 152982 28 100.0 32 ............................ TGCATTATGTAATAGATGAATGGTTTGGTGAA 152922 28 100.0 32 ............................ TTAGCTACTGCAGTAAAACCAGCAAAACAGAA 152862 28 100.0 32 ............................ TTCCAAAATAGTGATGGAGGCTTGTGGCAGCG 152802 28 100.0 32 ............................ TTTGAGAAAGGAAAACCTCTTGACCACAGCCC 152742 28 100.0 32 ............................ CAGACGTGGCGAATAAATACCATAAATTTTAT 152682 28 100.0 32 ............................ GTTGTTCCATGTATTATTATTCCAGTACCCGT 152622 28 100.0 32 ............................ TTTTCACTGATTTGCATTAGCTCACCTCAAAA 152562 28 100.0 32 ............................ TGCATGAGTTGGCCGAAAAAATCAGTTCCCAG 152502 28 100.0 32 ............................ CAAGACACTGAACCCATCTGATTTCAGATTTA 152442 28 100.0 32 ............................ CGCGAGACCCTTATCTCTATCAACGCATTTGG 152382 28 100.0 32 ............................ GGGCCAAGTAATTGATAAGATTGAATCGATGC 152322 28 100.0 32 ............................ GAAAGAGGGTAGAAATATGAGTGATACATTAT 152262 27 96.4 0 ........................-... | ========== ====== ====== ====== ============================ ================================ ================== 14 28 99.7 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCAGAAGAAGCTGGTCTGGAAGTTGTTATGGATCGCTGCCCGAAAATTGAAATACCAAGATTGGGACTCGAAAAATAATCTTTATCAGCTTGTAATTATTTGGTTTCTAATCGGCGGATGAAGGGAGCCTGGCACCAATATCTAATACAAACTAAAGCGTTGGATGAGGGGCGGTGTCCGGGTTTCAAGTGTTCAAATAATGTTTAAGTTGGATATTGAGTTTACTTTTCTAGACATCTTATAGAATTTATTTTTTCAGTTATTACAATATGTTAAGGAACATTTGGTTGTTCTTGTGGTGGCTAAATTTTGCCAGAATCTACACTTTTATTGCTATAAGATATGGCGCTTTTGCTATACTCCAGTTTTGACCCTTTTTTATCATTAAAAAATAACCTATTGATTTAAAAGAAAAATTAGATATCTCCTAAAAAAAGGGTTTTTTCATTTTTTATCATTATATTCTTTAACAGTCAGCAACTTAAGGTTAATATGTAACA # Right flank : CACGATAACTGCCTTAGGTTGTTTAGATATAAATGGGAGATTAATTGCGCAGTCTTGGGGCCAGTAGTTGATTGCGGATAGATTCTGCTAGCTCATCTAGAGAAGGTTGTTCTGGATGTTCATCAGATATTTCATAGGCTAATTGTGCTTCAGCCAAATAAGTATGTACAGGTTGACCGTTGTCATCTTCCATCACAACGTGATACCAGGGAGCTGAACGCAAGGTAGCATTAGATGCAATGTCATCCTCTTGGGGTTGCTCCAGAGAGTATTCCACATCAATATCCACGATGACTCCTAAATAACCAAGAAGCTTATGACGTACTTGTTGGCCGATACCGAATTTGCTGGCGATAATCATAGTCACCTCCAAAGAAGATCTTACATTGAGATTGATATAAGGGCAGTAAGGTGAATTACAAGAGCATACCCGGTGGTTGAAGTCTTTTTTTGCTTTAATTGCGAGTGTGACTTCATCTATTTCAGGTTAGCTGTAGTAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //