Array 1 873767-874865 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024984.1 Thermus thermophilus strain JCM10941 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 873767 36 100.0 35 .................................... TCGTAAGCGATAACGGGGAGGGCGACGCCAATCGC 873838 36 100.0 41 .................................... GCCACGGCGTACGCCGCCGCCCAGAGGGCCTTCTGGTTCAG 873915 36 100.0 39 .................................... TTTGCGAGGATTACCCCCTCGGTGGGCCCGAGGAGGTTC 873990 36 100.0 39 .................................... CACGTCCCTCACGACCGAGGCCAGGGACGTCTTCACGTG 874065 36 100.0 38 .................................... CTCCCTCCTTTCCCGCCTATCTTACTCCCCCATGAGGT 874139 36 100.0 42 .................................... ACTTCAAAGTGAAGGAGCCTAGGGGCTTGGTCATAGACTGGC 874217 36 100.0 39 .................................... GGCGAGGAGCCGCCGCACCCCGATGATCTTGCCGTCGGA 874292 36 100.0 40 .................................... CATTGGCGTGGGTGCCACCCCGCCTACGCCGATGCTACGG 874368 36 100.0 43 .................................... TTTGCCCTTCTAGGGCCTTCTGGAGTTCGTGAAGGTTCGCCAC 874447 36 100.0 40 .................................... CTTCAGGAATGGGCACGCCCACCTGCCGGAGAAGTTCAAT 874523 36 100.0 41 .................................... CTAAGCAGGAGGAGGCCCACGGCCTGGTAGAGGCCAAAATA 874600 36 100.0 42 .................................... ATCTCTAACCAGGCTACGGAGAGGATAGTGGAACTCTACCGG 874678 36 100.0 39 .................................... TATCAAGGGTCTTCCGCAAGCGGAAGGCGCGCGGGGAGT 874753 36 100.0 41 .................................... CAGCCCGCTCCATCTCGGCCAGCTCTAGGGCGTGGGGACCA 874830 36 94.4 0 ................................AT.. | ========== ====== ====== ====== ==================================== =========================================== ================== 15 36 99.6 40 GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Left flank : AGGACCCGGGCCCGCAAAAAGCGGCGCCGCTAAGGCTTCCGCAAGCCCCTGGGGGGGCTGGCAGCGCTCCAGGCCCAGCGCCTGGAGGCTGCCCTCTTGGGACGGGGGCGCTGCGCCCCCTTTTACTTCTGGCGGTAGAGCGGGCCTTTGCTATACTTGTCAGCAAAATTACGATGCAACTGGCTTTCTTTGGGCTTTGAAAAACAAAGCTCAGTCCGGTAGCCCCTTCCTCGCCGAAATTTTGACCTGGCCCAACGTTGCGGTGTGTGCTATACTCCCCCTAACCCGGACCTCCGGGTGGGGACCTTGAAAGCCAGTTTTTCCCTTGCGGAAGGCGAATATGCGCTTTTTCTTTTCATCGCCCCTTCCTCCTGTGGCTTTGCATCGGCATAAACCCCCGAAAACCCCCGTTATTCGCCGTGTGCATATTCCAAGCTTCATCTTTCTCACAAACCCCCCTCTGGCGGCGCCGTCCAGGACGGGGTTCTTTGGGGGGTACC # Right flank : CTGTCTTGCCTGTCAAGCGACCCCTTGATCTAGCTGGGTTGCGTAGTACTCCCTGAGCCTTCCCATCATCCGCCTGAGGAGCTTGTGGGCCACGGCCACCAACGCCTGCTTCTTTCTCTTTCCCCGCGAGAGCAGGCGGTGGTAGAAGGCCCGCATCTCCGGGTCATGGCGCACCGCCACCAGGGCGCCCATGTAGAGCTTTCGCCGCAGGAGGGGAGGCCCTTTTTTGGAGAGCCGACTCCTCTCCACGCTCTTTCCCGACTCCTCCCGCTCGGGGATGAGCCCCGCGTAGGAGGCCGCCCTCTTCGCCCGGCCCCAGAGCTCTGGGGGCAGGAGGGCCAGCACCGCTGCCGCCACCTGGGGCCCCACCCCGGGCAGGGCCATCAGGACCTCGGCCTCGGGGAGGGTGGCGAGGAGGGCCTGGATCCTGGCCTCCACCTCCCCGAGAAGCCCCTTCACGCAGGCCAGCTCCTTCTGGAGGAGGGCGAGGACCTCCTTGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 876063-876401 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024984.1 Thermus thermophilus strain JCM10941 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 876063 36 100.0 40 .................................... CACCTCACCTCCACTCGCTTATCACGCGCCTCCACCAATG 876139 36 100.0 41 .................................... GGGGTCATAGATCCAGTCCCTAGGCGGGCCGAGGCGAATCC 876216 36 100.0 40 .................................... TTGCTGATTGTGAATGATGCCCATTCCTCCTTAGAAGGAA 876292 36 100.0 37 .................................... GCTCGTCACGGGAAGCGCAAAAAGGTAGCTCCTAAGG 876365 36 94.4 0 ...............................A..T. | T [876398] ========== ====== ====== ====== ==================================== ========================================= ================== 5 36 98.9 40 GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Left flank : CCTTGGCCTTGCGGAAGGCGGCGAGGTGGTAGGGGTTGACCAGGGCCACCTGGAGGCGGTTTTCTGCCAGGAGCTTGAGGAGGGGGAGGTGGTAGGCGCTGGTGGGCTCCAGGGCGACCCAGGCGGGGTTGTGGTGGGCGAGGGCGGCGAGGAGGGCTTGACGGCCTTCAGGGGAGTTGGGGAAGCGGAGGCGGGTGGGTTTGGGGGAGTTGGAGACGAGGGCCAGGTCCAGGTGGGTTTTGCTGACGTCAATGCCGGCGAAGGTCATGGGCTCTCTCCTTTTGGTAACCTGAGGGAGGTGGCCACCCGACCCTGTGGGCCTTCCATGTGGATGCGGTCTTTGACGACCGGGATACTGTGCGGCGGGGAGGCCGGGGTGGGTGGCTACCGATCAATCCCGCGGGCGTGGTGGCCCGGCAACCGGGGCGGTGGGGCCTCCCTCAGGGGGCAAGATACATGCGACTCGGTTATGGCCCTCCAAAAGGCCCTTGTCTTCTCCA # Right flank : CTTGCCCATCAAGCGACCCCTTTGTCGTGGGTGAAGGCCTGTACCCCTCGCGCTAGGAGGCTTTCACGCAGGCCCCGGCGCGCCTGCCCACCCACCTTCCGGGCCCTTTCCCAAAGGGGCGCTCCCAGAAAAGGGGCCCGGGCGGTTCGGCGCCCGGGCCTTCGCGTCGTTCCAAATCTGGGGCTCTTTAGAGGACCAGGGTGCCCGCCCCCACGGCGCTTAGGGTGGGGGCCTCGAGGTCCAGGCGGTGGGCCAGGACCTTCCCCTTCCTTTCCCGGAGGAGGGGGAGGAGGCTTGCCACCACCTCCACCCCGTCTATGCGGGTGGGGTTGGCCCCCAGGAAGGCGAGGGCGGCCTCCGGCTCCCCTTCCGCGAGCCTTTCCAGGAAGCCCAGGTCCCGCCTCCTCGCCTCCTCCGCCAGGGTGCGGGTGAGGGGGGTGTCCCCGAAGCGGGGCCCCACGTGGGAGAGGTCCACGGCGAGGACGAGAAGGCCCGGGAAG # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 37260-35819 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024985.1 Thermus thermophilus strain JCM10941 plasmid pTT27, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 37259 29 100.0 32 ............................. ACGCCACCCGCTCCTACTCCGAGGTGACCCGC 37198 29 100.0 32 ............................. ACGATTTGGCCGGGGCCCTTTACGAGCTCTCT 37137 29 100.0 32 ............................. GTAGACCTGGCCCGCTTCGCGGCCGCCACTCC 37076 29 100.0 32 ............................. AGGTCATCGCCGCCAACATCGCCTATCTGCAA 37015 29 100.0 33 ............................. GCCGGACGCAGAATATAAGACGACCTTTGTCTA 36953 29 100.0 33 ............................. TAGGCAACCTCCTCAACGGGCTGATTCTCCACC 36891 29 100.0 32 ............................. CTGACAGCCCCCACCCGTCACAGGAGGCTAGG 36830 29 100.0 33 ............................. GGCCCTATCCAGTTTATCCTCAAGCTTGCGAGC 36768 29 100.0 33 ............................. GGTTAGCGCTATAAGCCCAAGGCCAAGGGGGTG 36706 29 100.0 32 ............................. ACCTCGTTGGGCGGCCAGAGAGAACAAGAGGG 36645 29 100.0 33 ............................. GGGGCCGCAGACCTGGTGGCCTGGTGTGGAGGC 36583 29 100.0 33 ............................. GGGCCGTAGTGCCTTGGGGCTCAGCAGCGCCTC 36521 29 100.0 32 ............................. AGGGTACTCAACGAGGCGGACGACCCACTCGG 36460 29 100.0 32 ............................. CTGGCCCGGGCGGCCTACCTGTGGCTCCTCCG 36399 29 100.0 33 ............................. CCTTTAGCCCAGCCGTGGCCCAGGACCCGGGCC 36337 29 100.0 33 ............................. CCCTCCGCCGTCCTGCAGGCCATGCTCCGGGCC 36275 29 100.0 32 ............................. GTGAAAAATCGGTTCCCGGCGTAGACCTCCAC 36214 29 100.0 32 ............................. CTTAGCCATTCGGCACCCCCTCCGGCCACGCC 36153 29 100.0 31 ............................. GCGATGTTGCCGGTAGTAATAGTAATGGCAA 36093 29 100.0 32 ............................. CCCCTGACACGACTCCGGGACGTGAAGCGGTC 36032 29 100.0 33 ............................. TCCTCTAGCAAGGCGCGCCGCTCCCGCGGGGGC 35970 29 96.6 33 .............G............... GGTCTTACGACCCCTCCGGGCCGGGCCTCCGGC 35908 29 96.6 32 ...........A................. CCGGAGGAGGTGCCCGACGAGCTTGCGGACGA 35847 29 96.6 0 ...........................G. | ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.6 32 GTAGTCCCCACGCACGTGGGGATGGACCG # Left flank : GCATGCGGGCGAGTTTGTCCAAGGCCATGCGGTACTGGCGCGTGGGGGCCTGGTGGTAGAGGAGCCTTCCCGCGGCGAAGAGGGCCAGGGCCTCTATAGGGTGGAGGGAAGGGGGGCGGTCGGCGATGCGGTAGAGCCCCCGGGCCAGGCGCTCCACGGGAAAGCCGAGTTCAAGAAGGGCCTCGAGGTCCCGCTCCACCGTGCGCTCGCTCACGCCGAAGCGGCGGGCGAGTTCCCCCACCCGCATGGGCCTGAGCTTTAAGGCCTCGGCCATCTGCAGGAGGCGGGCGCTCTTGGCCTCTTGTCCCATGTGTTCATGCTAAGCAAGCCGTTTGGGCCAGGGTGTGATTTTTGACCATGCTATACTGGGACCAGCGCCCATCCTGGCCTTTCCCCCTCCCCCGTTCGGGCGCTGGGGAACTTGACAGAAAAACCTGCAATCCTTCCTAAACAGACACATAAAGGGGGGTAAGCGGGCGTTTGTGCCGTCCTGGTCATGT # Right flank : ACCCCCTTCGGGCAACCCTTCCGTCCGACGGAAGCTTCCCCGGGCCGTAGACTGCCCTCATGAAGCGAAACGCTTGGGAGGTGTACGGCGAGGTTCTTAAGACGGCCCGGGAGCTTGGCCTCGAGGGGGAGGAGCAAGAGGTGGCCAAGGCCCTCCTCGCCTGGCCCAAAGAGCGCTTCCACGCCCTCGCCGCCCGGGTGGGCCTAAAGGCGAAGTACCTGCGGCACGACCTTCTCCCCATCGCCTTTCTCCCCGAGCCCCTGCGGGAGGCGCTCCAAGGGGGGCTCCCCCTCCGGGAGGCCCACAGGCTCCACCGGCTCCTGAAGCGCGGGGAGCTTTCCCTTCAGGACCTAACGGGCAAGGACCCCAAGGCCCTCATGGCCCTCCCGGCCAGGCCGGGGGAGGTGGACCCTCGCCTCCCCGTCTGGTTCTTCCCCCCTGAGCCCTGGGAGGAGGCCCTCCCCATGGCGGTGGCCCGGGCCCTGGTCCAGCTCTACACG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 47123-48390 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024985.1 Thermus thermophilus strain JCM10941 plasmid pTT27, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 47123 29 100.0 32 ............................. GCTGGCCTGCAGGACCTCCAGCATCTGGCGGG 47184 29 100.0 33 ............................. GCCCTAGACTCGGGCTATCCCGCCATCAGCGGC 47246 29 100.0 32 ............................. CCAGCGGATGGCGTCCTCATAGCGCATGCGCA 47307 29 100.0 33 ............................. GCAACCCCAGGGTTCAGGGGTTCAGTCGCCCAT 47369 29 100.0 33 ............................. TTCACCCAGCTTGACGGCGCCATCATTTCCCAC 47431 29 100.0 33 ............................. GCCATCCCGAAGCCGTGCGGGTTGCCTTCCCAC 47493 29 100.0 32 ............................. CTATCTTTCGCGAACTACCGGGCTTGGGCCGC 47554 29 100.0 32 ............................. TAGGCCATCGTGTCTAGGGAGGGGTTAGACCC 47615 29 100.0 33 ............................. GACGGTAGACCCCGAGACCGGGGAAATCCTGGA 47677 29 100.0 32 ............................. GAAAGCCCGAACTCATGGCGGACCGCGAACAC 47738 29 100.0 33 ............................. TGCCCCTCTGGCGGCCTAAGGAGGGTCATAAGC 47800 29 96.6 34 ............................A GACGACATCCTTAGCGCCCTCCTCATGGCCCTAC 47863 29 100.0 32 ............................. GTTCCGGCCTCCACCCTCCGGTACGCGGAGAA 47924 29 100.0 33 ............................. ACCATGAGCGGCGAGTTAGGGTGCGAAATCGGG 47986 29 100.0 33 ............................. GAGGCTCGCGGAGAAGGCCGCCACCTGCTCCCC 48048 29 100.0 33 ............................. TCCGACCCGCGCCGCCTCCTCTCTCTCTCCCTG 48110 29 100.0 33 ............................. ACTCGGGAGCCAAGACGTAGGTGGAGAACCGCC 48172 29 100.0 34 ............................. GACATGACCCCCGAGCAGCGCCGCGCCCTCAAGC 48235 29 100.0 34 ............................. GTGGAGTCTTCCCCTTCCTCTTCTGGCCCCCAGC 48298 29 100.0 35 ............................. AGCTCCCGCTTGAGCTCGTCCAGGAGGTACTTCGC 48362 29 93.1 0 .............A...........G... | ========== ====== ====== ====== ============================= =================================== ================== 21 29 99.5 33 GTAGTCCCCACGCGTGTGGGGATGGACCG # Left flank : GGACCCCACCCGCCCCGGGGGGCTTTGGGACCTCGAGGGCGAGGTGGAGGGCGGGGTGGCCTATGGTGGTGATGATCCTGGAGAAGGTGCCGAGGAGCCTGAGGGGTGACCTCACCCGCTTCCTGGTAGAGGTGGACACCGGGGTCTTCGTGGGCCGGGTCAGCGCCACGGTGCGAGAGCTCCTTTGGGAACGGGCCGTGGAGAAGGCCGAGGGCGGCCGGGTGGCCCTCGCCTACCGGACGAACAACGAGCAGGGCTTCGCCTTGCGGCTTCACGGCTACCCGGACCGCTTTCTGCGGGACTTTGATGGTATAGTGCTGGTGAGCGTTCGGAACGCCGAGGCGGTGCGGAAGGCGGAGAAGCTGTCCAGGCAGGTTGAGAGGTACAAAAAACGCCTTGCCAAGGGTTCCGAAGGGGATCTTGAGAGCCAAAGTCCGTAACTGCTCCCGAATAGACACATAAACGGGGGTGAGCGGGCGTTTTCGCCGTCCTGGTCATGT # Right flank : GGCGCTAGAAGGCCCTCACCTCCACCCCCGCCTGCTCCAGGGCCTCCCGCACCGCCCTCGCCACCTCGGGGGCGTTGGGGTTGTCCCCGTGGATGCAAAGCGTGTCGGCCCGCACCGCCACCTCTCCCCCGTCCAGGGCCTCCACCTTTCCCTCCAGCACCATGCGCAAGGCCCTCCGGGCCGCCTCCTCGGGGTCGGTGATCCAGGAGCCCGGCATGGAGCGGGGGGCGAGCTGGCCGCTTCGCAGGTAGGCCCTTTCGGGGAAGGCCTCGAGGACCACCCTGAGCCCCGCCTTCCGCGCCTCCTCCTCGTACACCGTCCCCGGAAGGACCACGAGGGGAAGCCCCGGGTCAAAGGCCTTCACCGCGAGGGCGATGGCCCTCGCCGTCTCCCGGTCGCGGCAGGCCTTGAGGTAGAGCGCCCCGTGGGGCTTGACGTGGTGGAGAGGAAGGCCCTCCGCCTTGAGGAAGGCGGAGAGGGCCCCGATCTGGTAGAGCACG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCGTGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 74549-73635 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024985.1 Thermus thermophilus strain JCM10941 plasmid pTT27, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 74548 36 100.0 41 .................................... TGGGTTGTGGAAAGGGAGGCTGAACAGCACAACCTAATCCT 74471 36 100.0 37 .................................... GTTGTAGTCCACGTTGTCAATCTGGCACCGCTGCCAC 74398 36 100.0 36 .................................... AGCCGATACCCCTCTCTCCAGTCCAGGGGGGCCTCC 74326 36 100.0 36 .................................... GGCTTGGGAAGCCCCTCAGCCAGCTCGTCCACCAGC 74254 36 100.0 36 .................................... CGGGCCCAGCCCAGCTACTCCCCGGCGGCCCTCCTG 74182 36 100.0 39 .................................... TGAGTGATAAGCATCCTTATCGCCCTTTTGGTCTTTTGG 74107 36 100.0 36 .................................... CCTCCTCTTCACCACGTCCGCCCATGTGATGTACCC 74035 36 100.0 36 .................................... CCCACTACGGCCACCCTATCGCTATGCCCTATCCGC 73963 36 100.0 37 .................................... AGGAATGGGCGCTTCTACGCCCTCATCGCCGGACTCC 73890 36 100.0 36 .................................... CCATCCGGGGGGGTATGGGGTTGGGGGGTGAGCCCC 73818 36 100.0 40 .................................... GGCGAGTGCGTTGTTCGCGGGGTGAAGCCCCCCCTTGGGA 73742 36 97.2 36 ..........T......................... ATAGGATGAAGGCCGAAAGGAGGGTGAACAGCGATG 73670 36 83.3 0 ..........T...T.................GCCA | ========== ====== ====== ====== ==================================== ========================================= ================== 13 36 98.5 37 GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAAC # Left flank : GCCTACGATACCCCTGACGACCGTCGGCGGGCGCGGCTTGCCAAGCTGCTCAAGGGCTTTGGCGAAAGGCGGCAGTACTCCGTGTTTGAAGCCCGGTTGACCCGGGAGCAGTGGGCCCACCTCAAGGGCAAGCTGGAAGCCCTGGTCAACAAGGAGGAGGACGTTTTGGCGGTGTACTTCTTGCCCCCGGAGGCGGTGGGACGCACCTGGCGCATCGGCCACGAGGGGTTGAAGCGCCTCGAGGACCCCGACTTCGTCTAGCGAGCGCGAAGGCCACCTTATGCAAACCCCCTGTGCCAAACCGGGGGTTTTTGCTGTACAGAAGGCTGCTCTTTTGAATTGCATACTTGTTCTTTCCCCTCGTGCGCGTGCGCACTCGTCCTGGAGAAGGAAAGTCCCACTTTAGTCCCACGGCTCCTCTTCCAGGTTGACGCATAATCCCCCCGCGTGCGAAAATGGCCTCAAGACCCCCCGCCTGGAGCCGCTTCCTGGAGGGGGCC # Right flank : CCCGACCCTGTGGGCCTTCCATGTGGATGCGGTCTTTGACGACCGGGATACTGTGCGGCGGGGATCAGGGGGCAAGATACATGTACCCGGTCGTCAAACCGGAGGCGTGAAAGGGGGCCTGTATTGCGAGGAGTTATCGTTCGCAATACTCATAAAATCCGACCGGAATACTTGACTTTTACCTCCCCCCTGGCTAGCCTGGCCTCCAGGAGGTGCGCCCGTGTTCGTGACGATGAACCGCATCCCCGTGCGGCCCGAGTACGCCGAGCAGTTTGAGGAGGCCTTCCGGCAGAGGGCCCGGCTCGTGGACCGGATGCCGGGGTTTATCCGCAACCTGGTCCTGAGGCCCAAGAACCCGGGGGACCCCTACGTCGTCATGACCCTCTGGGAGAGCGAGGAGGCCTTCCGGGCCTGGACAGAAAGCCCCGCCTTCAAGGAGGGGCACGCCCGGAGCGGCACCCTGCCCAAGGAGGCCTTCCTGGGGCCGAACAGGCTGGAGG # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.90,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : NA // Array 4 121607-121347 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024985.1 Thermus thermophilus strain JCM10941 plasmid pTT27, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 121606 36 100.0 40 .................................... ACCAGGGTGGGGGAAACCTTCTCCAAGGCCTTCTCCAAGG 121530 36 100.0 38 .................................... CGCTTAGGTCCGCCGTCAGGGCGGGCGACGATGGTCGC 121456 36 100.0 38 .................................... ATGAGCCCCTTTATCTCCCGGTCGTCGTTGACAACCGG 121382 36 91.7 0 ................................ATG. | ========== ====== ====== ====== ==================================== ======================================== ================== 4 36 97.9 39 GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Left flank : TCAGGCCCAGGTCGTCGTGGTGGAGGATGAGGACCCGCCGCCCTCCAAGTCCGAGCCGCTCCAAAAGGTCCACGGAAAACCTCCTTTCCCCGCCTGGCTTCCATTCTAGCCCAGGTTCGCGCCTTCCCAAACACGCCCTTTTACCTTCGGGGCTAGGGGGTACTTGACACGACGGAACGGGCGTTTTTTACGCTTTCACAAAGCGAAGTAAGGTGGAAAAGGGGCTTTTTGGGGCAATTTTGGACGGGGTACACCGTTTCAGCGAGGTGCTATAATGCCTTTGTCCGGACCTCCGGACGGGGATCTTGAAAGCCGGTTTTTCCCTTGCGGAAGGCGAATATGCGCTTTTTCTTTTCATCGTCCCTTCCTCTTGTGGCTTTCTATCGGTGTAAACCCTCAAAAACCCCCGTTATTCGCCGTGTGCATATTCCAAGCTTCATCTTTCTCACAAACCCCCCCTCTGGCGGCGCCGTCCAGGACGGGGTTCTTTGGGGGGTCCC # Right flank : TTTGACCCTTCGCGGGCGTGTGGCCTCAAGAGGTACTCCGGGCTCCCGGGCCGGTATCGTGGGGAGCGAGGACCCGCCCGAAGGTGGACGGTGTGGCGGTCTTTGCGGGTTGACCTGAAGGCGAGGAAGGCCTCCTGGCAAGAGGTTCCGCCCGAGGAGGTGGCCTTCGGCGGGCGCTACCGTACGGGGCAGGCGCTTTGGGAGCGGGAAGCCTACCGCGTTGACCCCCTCTCCCCGGAAAACCCCCTGGTCTTCGTCGTGGGGGCTCTTCCCCCTCTGCCATCTCCCTGAGAGATGGCATTGTCTTTCCGCTATTGAATGACTATCATTCAAGTATGGAAAGAACTTTCCTGCCCCGCGCCGCCGGGCCCCTCCTGGAGCGGCTTCTAGTGGCCTGAGGGGGCTTTCCGCCCCGGTCCATCCCCAACCTTCATGTGCGTGGGTGCTGGGCCAAGCAGAAAGTCAAGTCGCGATTTTTGTGGGGTTCTCTGAACCCGGAC # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 5 237069-237257 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024985.1 Thermus thermophilus strain JCM10941 plasmid pTT27, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 237069 36 100.0 41 .................................... ATGTGGCAGTCCAACGACGACGGCTTCGGCATGTTCTTTCG 237146 36 100.0 40 .................................... CATGATGAGGGCGTGAGCGGCCTCGGGCCGGGACTGAAGG 237222 36 94.4 0 ................................AT.. | ========== ====== ====== ====== ==================================== ========================================= ================== 3 36 98.1 41 GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Left flank : AGCGCTTGTTGGAGGGGGTGAGCCATCCCCTGGGGTTCCGCAAGCCCCTGGGGGAGACGATTGAGGTGCAGGCTCAGCGGCTGAAGGCGGCCCTTCTGGGGCGGGGGCGCTACACTCCCTTTTACCTATGGCGGTAGGGGCAACTCTTGCTATACTTATCCGCAACATTGCGATGCAACTGGCTTTCTTTGCGCTTTTTCAAACAAAGCTCACTTTGGGAGGCGTTTCTTCGCCGATATTTTAACCTGGTGCAACGTTGCGGTGTGTGCTATACTCTTGCCAACCCGGACCTCCGGGCGGGGATCTTGAAAGCCGGTTTTTCCCTTGCGGAAGGCGAATATGCGCTTTTTCTTTTCATCGCCCCTTTCTCCTGTGGCTTTCCATTGGTGTAAACCCTCAAAAACCCCCATTATTCGCCGTGTGCATATTCCAAGCTTCATCTTTCTCACAAACCCCCCCTTTGGCGGCGCCGTCCAGGACGGGGTTCTTTGGGGGGTACC # Right flank : CTGTCTTGCCTGTCAAGCGACCCCTTGATCTAGCTGGGTCGCGTAGTACTCCCTGAGCCTTCCCATCATCCGCCTGAGGAGCTTGTGGGCCACGGCCACCAACGCCTGCTTCTTTCTCTTTCCCCGCGAGAGCAGGCGGTGGTAGAAGGCCCGCATCTCCGGGTCATGGCGCACCGCCACCAGGGCGCCCATGTAGAGCTTTCGCCGCAGGAGGGGAGGCCCTTTTTTGGAGAGCCGACTCCTCTCCACGCTCTTTCCCGACTCCTCCCGCTCGGGGATGAGCCCCGCGTAGGAGGCCGCCCTCTTCGCCCGGCCCCAGAGCTCTGGGGGCAGGAGGGCCAGCACCGCTGCCGCCACCTGGGGCCCCACCCCGGGCAGGGCCATCAGGACCTCGGCCTCGGGGAGGGTGGCGAGGAGGGCCTGGATCCTGGCCTCCACCTCCCCGAGAAGCCCCTTCACGCAGGCCAGCTCCTTTTGGAGGAGGGCGAGGACCTCCTTGC # Questionable array : NO Score: 5.26 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 6 238459-239402 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024985.1 Thermus thermophilus strain JCM10941 plasmid pTT27, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 238459 36 100.0 39 .................................... TGCTCTAATCGGGCCTGTTCGGCTATGGCCTTGGGGCTC 238534 36 100.0 40 .................................... ACAACCCGCCCAAAGGGAATGCCGCTAGCCCCAGACACAT 238610 36 100.0 36 .................................... CAGTCCCACCCCTCGTGGGGGGCGGCCCTGTCGTCG 238682 36 100.0 39 .................................... CGCACCCTCCTTCCGAGCTTCCACCCGGCGTACATGGCC 238757 36 100.0 39 .................................... TTCAGCAGACCGAAGTGTCTTCCGTTGCGAACAGTGTAG 238832 36 100.0 42 .................................... CCTCATCAGCGCATCTAGAGCCTGAATTATCCTCATTTCTTC 238910 36 100.0 40 .................................... GCCATCACCGTGAGGCCGCCCTCCACCAGCTCCCCCTCCA 238986 36 100.0 40 .................................... TTTCTTAATTACGAGCCAGTCATTCGGATAAACCATGAGA 239062 36 100.0 39 .................................... TGAAAGTTTCGGTGGTCCCCCCCGCCCTCCACCAGCGGA 239137 36 100.0 40 .................................... CCGCAGCTGGGGCAAGTGCAACCGCAGTAGCTCATACTCC 239213 36 100.0 40 .................................... TTGGCGGTCAGGGTTTGGTACCGCACCGTGTTCGGCGTTA 239289 36 100.0 42 .................................... TTCTTGATTATCCTGACCTTGTCCTTCATCTTTGACCTCCTT 239367 36 97.2 0 ..................................C. | ========== ====== ====== ====== ==================================== ========================================== ================== 13 36 99.8 40 GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Left flank : GGCCTTGCGGAAGGCGGCGAGATGGTAGGGGTTGACCAGGGCCACCTGGAGGCGGTTTTCTGCCAGGAGCTTGAGGAGGGGGAGGTGGTAAGCGCCCGTGGGCTCCAGGGCGACCCAGGCGGGGTTGTGGTGGGCGAGGGCGGCGAGGAGGGCTTGACGGCCTTCAGGGGAGTTGGGGAAGCGGAGGCGGGTGGGTTTGGGGGAGTTGGAGACGAGGGCCAGGTCCAGGTGGGTTTTGCTGACGTCAATGCCGGCGAAGGTCATGGGCTCTCTCCTTTTGGTAACCTGAGGGAGGTGGCCACCCGACCCTGTGGGCCTTCCATGTGGATGCGGTCTTTGACGACCGGGATACTGTGCGGCGGGGAGGCCGGGGTGGGTGGCTACCGATCAATCCCGCGGGCGTGGTGGCCCGGCAACCGGGGCGGTGGGGCCTCCCTCAGGGGGCAAGATACATGCGACCTAGGCAGACCTCTTCCCACTCCGTGAGCGGGTATGGCATG # Right flank : CTCGCGGGGGCCTTTGGCTAGCCTTTTCCCATGGGCAAGCGTCTCTATGCCGTGGCGTACGACATTCCGGACGACACTCGCCGGGTGAAGCTGGCCAACCTCCTGAAAAGCTACGGGGAGCGGGTCCAGCTCTCCGTGTTTGAGTGCTACCTGGACGAGCGGCTTCTGGAGGACCTGCGGCGGAGGGCCAGGCGGCTTTTGGACCTGGGCCAGGACGCCTTGCGCATCTACCCCGTGGCGGGCCAGGTGGAGGTTTTGGGCGTGGGGCCTTTGCCGGAGCTCCGGGAGGTGCAGGTGCTGTGAGGCCCCGCGTGCACACTTCACACGGGTCCTGGGGAGGCCCGTTTATACTCGGGCCATGCTTGGGGACGGCCTGAGCGTGGCCCTGGCGGGACTTTTGCACGACGTGGGCAAGCTCTATTCCCGCGCCCGCTGGGGCGAGCGGGACGATCAGGTTCCCGACCGCACCCACACCGCCTACACTGCCCACTTCGTCCGGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 7 247432-248145 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024985.1 Thermus thermophilus strain JCM10941 plasmid pTT27, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 247432 36 100.0 41 .................................... CGGAGGGGCCCCCTTCTCCCCCCGGGGCGGCATTTTCCCGG 247509 36 100.0 42 .................................... TCCCGAGGCCCGGTAGTGGGCCGTTGACCTCGGGCGCCTCCG 247587 36 100.0 37 .................................... GACCTTGAGGAGGGCTCCGAGTCTTTTCAGGGCGGGT 247660 36 100.0 38 .................................... AACCCTCCGCGCCATCGCCTCCCGCCTCTACCACCTCT 247734 36 97.2 40 ...................T................ CCGTAGATAAGGCGCCCGGGGACGACCACGTCAAGGCGCA 247810 36 100.0 38 .................................... CGGGGATGTAGTCCCCGGAGCTAGCCGGGGGAGGACCT 247884 36 100.0 42 .................................... GGTGCGAGGGGGTGGACCGCTAGTTGCGCCTCTATTCAAGAT 247962 36 100.0 37 .................................... CCGGGAAGGCCGTGGGCTCGGGCACCGCCGCCCCGAG 248035 36 100.0 39 .................................... CACAGAGCGGCCCTTTGGGGTGGGTTAGAAGAAGAAGAA 248110 36 94.4 0 ................................AT.. | ========== ====== ====== ====== ==================================== ========================================== ================== 10 36 99.2 39 GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Left flank : CGGCCCGGTCGGCCACCTCCAAAAGCCCCTCCTCGGCCAGGGCCAGGAGCAGGGGGCCTCCTCCTCCGGGAGGAGGTCTAAGGCCAGGCGGAGGACCTCCGCCTCGGTGCGCCCCGTGGCGCGGGCTAAGCGCGTGCGCCTTTCCTCCGGGGCCAGGGGCCACTTGACACGACGGAACAGGCATTTTTCTCGCTATCGCAAAGGGAAGTAAAGTAGCGAAGGTTCTTTTTGAGGCACATTTGGACGGGGTACACCGTTTCAGCGAGGTGCTATAATGCCTTTGTCCGGACCTCCGGACGGGGATCTTGAAAGCCAGCTTTTCCCTTGCGGAAGGCGAATATGCGCTTTTTCTTTTCATCGCCCCTTCCTCCTGTGGCTTTCTATCGGTGTAAGCCCTCAAAAACCCTCATTATTCGCCGTGTGCATATTCCAAGCTTCATCTTTCTCACAAACCCCCCCTCTGGCGGCGCCGTCCAGGACGGGGTTCTTTGGGGGGTACC # Right flank : CTGTCTTGCCTGTCAAGCGACCCCTTGATCTAGCTGGGTTGCGTAGTACTCCCTGAGCCTTCCCATCATCCGCCTGAGGAGCTTGTGGGCCACGGCCACCAACGCCTGCTTCTTTCTCTTTCCCCGCGAGAGCAGGCGGTGGTAGAAGGCCCGCATCTCCGGGTCATGGCGCACCGCCACCAGGGCGCCCATGTAGAGCTTTCGCCGCAGGAGGGGAGGCCCTTTTTTGGAGAGCCGACTCCTCTCCACGCTCTTTCCCGACTCCTCCCGCTCGGGGATGAGCCCCGCGTAGGAGGCCGCCCTCTTCGCCCGGCCCCAGAGCTCTGGGGGCAGGAGGGCCAGCACCGCTGCCGCCACCTGGGGCCCCACCCCGGGCAGGGCCATCAGGACCTCGGCCTCGGGGAGGGTGGCGAGGAGGGCCTGGATCCTGGCCTCCACCTCCCCGAGAAGCCCCTTCACGCAGGCCAGCTCCTTCTGGAGGAGGGCGAGGACCTCCTTGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 8 249345-250286 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024985.1 Thermus thermophilus strain JCM10941 plasmid pTT27, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 249345 36 100.0 42 .................................... TTCGAAGCGCCCCGCCCCGAGGCACTTCCCACACCCTTTCCC 249423 36 100.0 44 .................................... GTGCTCCTTCAAACTCCTCTCCAGAGCCTCCTGGATCAGTTCAT 249503 36 100.0 40 .................................... ACTCCCTCTACGCCCCCTAACTCGCGGTACGCGAAGAGGG 249579 36 97.2 36 ........A........................... GACAGGTAAGGGTGTAGAGGTCGTCCAGCTTCATAA 249651 36 97.2 37 ........A........................... AAGTGAGGATGTACCCCCGCCCCTTGAGCTTCTTCTC 249724 36 100.0 37 .................................... CTTTGCGCCGCGCGGCCTAGCGCCGACCGCGTATCCC 249797 36 100.0 37 .................................... CTTTAAGGGAGTCGCCTTCGCCCACGTCTTCCTTGGT 249870 36 100.0 40 .................................... ATTCTCCAACGAACCATGAGATTCACCCCCTTTGAGATTC 249946 36 100.0 38 .................................... GCGAGGAGCCGCCGCACCCCGATGATGCGCCCCTGGTC 250020 36 100.0 40 .................................... TCCTTCTTTGGGCCAGCTGATGCCCCAGGCAAGCCCCGGT 250096 36 100.0 41 .................................... GCTTCTCCGTTGCGCTGAGTTCGCCGTTGCTCCAGACATGG 250173 36 100.0 42 .................................... GTGTGGCCGCGGCTGCGCGCCGCGCGGCCCTTGCGCCCATGC 250251 36 91.7 0 ..............................G..CT. | ========== ====== ====== ====== ==================================== ============================================ ================== 13 36 98.9 40 GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Left flank : TTGGCCTTGCGGAAGGCGGCGAGGTGGTAGGGGTTGACCAGGGCCACCTGGAGGCGGTTTTCTGCCAGGAGCTTGAGGAGGGGGAGGTGGTAGGCGCTGGTGGGCTCCAGGGCGACCCAGGCGGGGTTGTGGTGGGCGAGGGCGGCGAGGAGGGCTTGACGGCCTTCAGGGGAGTTGGGGAAGCGGAGGCGGGTGGGTTTGGGGGAGTTGGAGACGAGGGCCAGGTCCAGGTGGGTTTTGCTGACGTCAATGCCGGCGAAGGTCATGGGCTCTCTCCTTTTGGTAACCTGAGGGAGGTGGCCACCCGACCCTGTGGGCCTTCCATGTGGATGCGGTCTTTGACGACCGGGATACTGTGCGGCGGGGAGGCCGGGGTGGGTGGCTACCGATCAATCCCGCGGGCGTGGTGGCCCGGCAACCGGGGCGGTGGGGCCTCCCTCAGGGGGCAAGATACATGCGACCTGGTCTCGGAGGGGGTGCGGTTGTGAGCCGGGCCCTGA # Right flank : CGGGCCTGGGCTTGTATCCTTTCCCTAGGAGGCGTCCATGCAAGCCCCGGTGTACCTGTGCCTTCTGGGCAACGACCCGGCCCCGGCCTACTTGGGCTTGAAGGTGGTGGAGCGGGAGGCGGGGAGGGTGGCGAAGGCCGTCTTCTACTCCTTCCCGGCGTGGAACGAGGAGTACGGGAAAAAGCGCCAGGCCTTCTTCCGCCTCCTTTCCGAAAAGGGCGTCCTCTACGAGGAAAGGCCCCTAGAAAAGGGACTGGAAGAAGCGGAGGCCCGGGAGGTCTGGGTGAACCTCACGGGAGGGGCCAAGTACTGGGCGGTCCGGTTCCTCGGGCACTGGCGGCGGCCCGGCGCCCGGGTCTTCCTCGTGGAGGGCCACCGCGCCCTCGAGGCGCCCAGGGCCCTTTTCCTCTGGCCCCGGGAGGAGGAGCGCTCCCTTGAGGCCGAGGCCCTCACCCTGGAGGAGTACGCCAGGCTCTATCTGGAGCCCCTGGGGGAGGCCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA //