Array 1 71266-71894 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWZX01000023.1 Pseudomonas aeruginosa strain SC1 IPC1432_23.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 71266 28 100.0 32 ............................ AGGCTCGACCCGCACATATCGCATTCGCTCCA 71326 28 100.0 32 ............................ ACCTGCTGCCGCTCCTGGGCGGGCTGTTCACG 71386 28 100.0 32 ............................ TTCTGCGCCTGAATGGCAGCGACGAGCTGCTC 71446 28 100.0 32 ............................ TATTCAGGGCAGGTGCCGGTCAGGCTTGGCTC 71506 28 100.0 32 ............................ TCGTCCACGGTGTAGATGCCAATCCGGGTCAG 71566 28 100.0 32 ............................ ACAAGCGGAAGATCCTGGAGATCCGCGCCGCC 71626 28 100.0 32 ............................ ATCACCCCGGTGACGCTGCACGTCGTCGCCGT 71686 28 100.0 32 ............................ AGATCGTGATGCCTCCTGCATGCGAGAAGGGC 71746 28 100.0 32 ............................ ATCCGGCCCGCTCACCGACGGCGGCGCGTCCT 71806 28 96.4 32 ............G............... ACGGTCCCTTGCTCGCGCCGACCAAGCGCCCC 71866 28 82.1 0 ......................G.CTTC | C [71886] ========== ====== ====== ====== ============================ ================================ ================== 11 28 98.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CCAACCGCTTCCCGCACAACGCCACGCTGTACCTCGACAGGCGCCGCCCGGCCAGTTGTTCGAAAGCGCGAAAACACGCCTGAAGTCGGCGATCAACGTCCTCGCCATGACCTGTCTGCTCGACGAGAACGAAGAACCCGGCGAAACCCTCGCCTATATCAACGGCGCCTTGCTGAAGCTGGTCAGCGACGCCCTCTCCGAGATCGAAGCGGCCCACCCACGCCAGTAGCGCACATCTCAGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGAGACGCGATCCCTTCGAGGCCCATTCGCGCGCGAACGGTGAGGCTCACCGCCCGTCCCGCTCATCACGAAATAGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGGTTTCTTACGCCCTTGAAAATCAAAGACTTACAAAGCCTCGTAAAAAGAGGGTTTCAAACTGGGAAAACCCTGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGCGGCTA # Right flank : CCACTCGGGCTCGCAAATGGACGCTGGAAGGCAAGAGACGATCACCGTGGAACGACTGGAAGACAATGCCGTTCACACCCGGCTTTCCCCTGACGAAACGAATAGCCTGTCCGTCTCCGTAACGCCCCTGTCAACTTGCCCCGGTAAACCGGACCTTCGTGAAGCCTGCGGAGAACTCCGGTATGAGTGGGATGGACCTCAAGCGCCGCCGCGTCGTGCAAGGCCTGGGCGCTGGACTGCTGTTGCCGGCGCTGGGCGCGCCGGCGCTGATCGCCTCGCCCAGGGCGCGGCCGAAGCTGACCGATGGCGTGCAATCCGGCGACGTGCAGGGCGACCGCGCGCTGGTCTGGAGCCGCACCGACCGCCCGGCGCGGATGATCGTCGAATGGGACACCCGTAGCGTCTTCAGCGAGCCGCGCCGGCTGGTCTCGCCGGTCACCGACGAGCGCCTCGACTACACCGCGCGCATCGACCTGCGTGGCTTGCCTGCCGACCAGTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 143988-144315 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWZX01000007.1 Pseudomonas aeruginosa strain SC1 IPC1432_7.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 143988 28 100.0 32 ............................ TAGGGTTCAGCCGGTGGCTGCGAGTGTCGATT 144048 28 100.0 32 ............................ TCATTGTTGGATAGCCAGGCCGGTATGCTGTC 144108 28 100.0 32 ............................ ACCGGGCGCGCGGCAAGGATTGAGGCAATTTC 144168 28 100.0 32 ............................ CTCTACCGAGGCCAGGTCCGCTATCTGTTTCT 144228 28 100.0 32 ............................ ATTCCAGGCGGACCCAGACTTCATCCGGTTGC 144288 28 96.4 0 ...........C................ | ========== ====== ====== ====== ============================ ================================ ================== 6 28 99.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CCGCTTCCCGCACAACGCCACGCTGTACCTTGACACCCAGGCGCCACCCGGCCAGTTGTTCGAAAGTGCGAAAACGCGCCTGAAGTCGGCGATCAACGTCCTCGCCATGACCTGCCTGCTCGACGAGAACGAAGAACCCGGCGAAACCCTCGCCTACATCAACGGCGCCTTGCTGAAGCTGGTCAGCGACGCCCTCTCCGAGATCGAAGCGGCCCACCCACGCCAGTAGCGCCCATCCCAGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGAGACGCGATCCCTTCGAGGCCCATTCGCGCGCGAACGGCGAAGCTCACCGCCCGTTCCGCCCATCGCGAAACGGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGGCTTCTTACGCCCTTGAAAATCAAAGACTTACAAAGCCTCGTAAAAAGAGGGTTTCAAACTGGGAAAACCCTGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGCGGCTA # Right flank : ATCGCGAGCGATAGCGATATAGCGCCATAGGGCTTCGGCCTGCGGAGGTCTGGCAGGCACGAAGTCATGCTCACCTGTCCCTTGGGGTAATGGTAATGCCCGTCAGTCAAGAAAAAACGGCGTGTCCCCAAGCAAGGGACGCGCCGTTTTTCCGGGGCCTTTTGTGCTGGCCTACAGCCCGTTCTTCGCCTTGAACTCGCGGCGGCGGCGATGCAGGACCGGCTCGGTATAGCCGTTCGGCTGCCGAGTGCCTTCCACCACCAGCTCCAGGGCGGCCTGGAACGCGACGTTGTCGTCGAAGTTCGGCGCCATCGGCCGGTAGGATGGGTCACTGGCGTTCTGCCGGTCGACCACCACGGCCATACGCTTGAGGCTCTCGACCACCTGCTCCTGGCTGATCACGCCGTGACGCAGCCAGTTGGCCAGCAGTTGGCTGGAGATGCGCAGGGTGGCACGGTCTTCCATCAGGCCGACGTCGTTGATGTCCGGCACCTTGGAGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 50301-51123 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWZX01000008.1 Pseudomonas aeruginosa strain SC1 IPC1432_8.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 50301 29 100.0 32 ............................. TCAGCTCGACCGTTGCAATCGCGCATTCTTTC 50362 29 100.0 32 ............................. TCGGTTTCGCCGGAGGCGATGACTGCATCGTC 50423 29 100.0 32 ............................. CCCAGGTCATTGCCTGGGCCTTGTAGTGTGGT 50484 29 100.0 32 ............................. TTCCTCAGAAACAGTGGCCGCTGCTTGCTTAA 50545 29 100.0 32 ............................. TCCTACTGACGTAGGACTCGTTGACGCTTCGC 50606 29 100.0 32 ............................. GACATCGGCCAGTTCGACTGGGAACAAACGTC 50667 29 100.0 32 ............................. GAGGACCTATGGCGGATTCAATGTGGGGAGAA 50728 29 100.0 33 ............................. AACTCGAATGGCATTTGGGAGGTGATTGAGAGC 50790 29 100.0 32 ............................. GCCTGTAGGCGGTTGACCAGAGCGTTCCCGGC 50851 29 100.0 32 ............................. ATGCGGCAACTGATAGCACCGCAGACGGCCGC 50912 29 100.0 32 ............................. CCCTATGGGCAAGAATCAAAGAACTTCCAGAT 50973 29 100.0 32 ............................. AACGCGGCGCGCGAACGCCCATCTTCCAGAAG 51034 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCG 51095 28 79.3 0 A..........A..C..-.....A....T | C [51099] ========== ====== ====== ====== ============================= ================================= ================== 14 29 97.8 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTCGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACTGGCCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCGAGGGTGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGGTGAGGTGGTGGGTCGCATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATTCCGATGCGGGTAGGTTTCGACTGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCGGGAGCGGCGCGAGGGCCGCTTGGCCCGGTGGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : TGTCTACGCTCCTGCAGTTCGACCCACCGCGCGGTATTTCCCACGGTGGGGCGAACCGCGCGGCACTTCGACCAGTGGCGTGATCACCAGTGTCAGCCGCCAGTTGTCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCATGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAACAACTGACGGCGCGGCGTTGGGCGGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTTGAAGAAGGCTTCCAGCCCCCTGTGGCGGAAGGAAACAGATTGTGAACGGGCGGCAAGTGAAGGTTGTTAGTGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGGTGGTCGGTCCAGGTCCATATCCCTCCTGCGGTCCTTCGCTTGCTAAACGGGGGTGAGCAGGCGTATCCCTCGCAGGCTGCTCCTTGACGAGCGTC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 60297-61607 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWZX01000008.1 Pseudomonas aeruginosa strain SC1 IPC1432_8.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 60297 29 100.0 32 ............................. GTGCTCGACGTCCGCAGTTCCTGGCCGGTAGA 60358 29 100.0 33 ............................. ATCGACCCGCTGATGGCTATGTTCAACGCCGTC 60420 29 100.0 32 ............................. TTCCTAGCCGACAAGCGCGGCTACACGTTGAA 60481 29 100.0 32 ............................. TCGCCGCGCAGGGGCATAAGCCATGACTCGGG 60542 29 100.0 32 ............................. ACCATGGAGCGCACGAACGGAACGCCGCGAGC 60603 29 100.0 32 ............................. TCCATCAGCTGCGGACCTGTTGGCGGGTGATG 60664 29 100.0 32 ............................. ATCAAGAGGGCACCCAGCCCAACGAAATTTTC 60725 29 100.0 32 ............................. GGAGCTTTCCGATATCGGTGGCGATACGGGAA 60786 29 100.0 32 ............................. ATTCAAGGTCGCCAACGGCCTTGCATGACTGC 60847 29 100.0 32 ............................. ACCGACGAATTGCATTTAAGGAACCCGACACG 60908 29 100.0 32 ............................. CGGGATCGACCGGCCCCGAAAGGGGAAACGAT 60969 29 100.0 32 ............................. CGCGAATCGCGGCCTTGGAGGGCGGCACTCCC 61030 29 100.0 32 ............................. AGGGGTCCAAGGACCTCCCACCAAACCTGTAC 61091 29 100.0 32 ............................. TACACAGCCGGGGACTCTGCCGCGAATCGTCA 61152 29 100.0 32 ............................. GGCTCGATCTCGGCGAACCAACTGGCTCGGAA 61213 29 100.0 32 ............................. GGAACGGGGCATGGGTTCGTGGTGCTCGGTTG 61274 29 96.6 32 .......................A..... TGGCTCGGCGGGCCGGGTTTCAGCTCGACGGC 61335 29 100.0 32 ............................. TGGCAGGGCGAGGTCGTGCTGCCGGTGATCGA 61396 29 100.0 32 ............................. GTCTGCGCAAGGACCGCAACGACGACCACCTG 61457 29 100.0 32 ............................. ACCGAGACGGGCAGCTTCGTCTACACGATGAG 61518 29 100.0 32 ............................. GCGAACCAGGTGCGCTACGGCGACATCGTCCG 61579 29 89.7 0 .G..........G..A............. | ========== ====== ====== ====== ============================= ================================= ================== 22 29 99.4 32 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : TGGCCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTCGAGCCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGTCACAGGACGCAAGGGTGAGCTTCCTGGCCGTGGTGGTGGAAAACGTCCCGCCGCGCTTGCGTGGACGTCTGGCTATCTGGCTACTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCAGCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGTGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATGTTGTACGGTAAGT # Right flank : GTGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCATGGGGCGAGTCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCCTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGCCGGGTCAACCGGAACGTCGATCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACACCCTTGTCGATGGCGGGTTGGGCGGGAACCGGCCAGAGCAGGGAGAGGCCGGGTTGGCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //