Array 1 167381-167768 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUJK01000004.1 Pectobacterium brasiliense strain Y29 Y29.scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 167381 28 100.0 32 ............................ TCCTTTTAGCACATCATCGGGGGCAAGAGGGG 167441 28 100.0 32 ............................ GCGCAAAGAACCTCGGTCACACCGTTCAGGAA 167501 28 100.0 32 ............................ CTTCTCAATAGACTGTTTGGCCTTACGAATGT 167561 28 100.0 32 ............................ AGCTCGGTATTTTCAGCGCAGAAAATATAGAG 167621 28 100.0 32 ............................ GCCGAGTCGTATCAACAAACATAATCGTGACG 167681 28 100.0 32 ............................ TAGGACCTATTGACTCTTAATCAATTGGTCGC 167741 28 78.6 0 A..C........AC......T.A..... | ========== ====== ====== ====== ============================ ================================ ================== 7 28 96.9 32 GTTTACTGCCGTGTAGGCAGCTCAGAAA # Left flank : CTGACGTTCTGTCATAAAGTCGGCGTCTGCGCGATCTTCTTGCAAAAACGAATGCCAATTGGGTTTAACAGGACGCAGCATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTGACCCCTTCAAAGTCCATATCACGCGGCAAGCGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGAGCACCTCCTCCTTAATAAATACAGAAATTCAGCCAGCAACTTACCGTTTATTATTGCTGGCTAAAACATAGGCTAAGTATAGATATTAATCACTCGATTGTATATCCATAGCATATGCAGATACCTGACATAGGCCTATCATCGATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTTACGCATCGTCGTAACTTATTGATTTTAAATTTAGATTATCAGATCTGATAAAAAAGGTTTTTTCGGGGAAAATGGTTTATTTCCTTTTAAAATTAGGCAACTACCGTAAAATATGAACG # Right flank : AATAAAGCTCTCCTAAAGTCAGGAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCTGATACTGTTTAGGAAACGCGATGTACCACATTGATGATTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAATGTTCCCGCCGCCGCATCGCGCTGGAACAGGCACAGCTGATTCTCGGCTATCATGCCCGTCTGTCGCCGAACGCGGTCGGGCTGGAATGTCTGGGATTAATTGAGGTGCGACTGATCAATCACACCAGCGAATACGTTGAGCGTTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGACGCCTATAAAACCACGGGCGATGCCGATTACCTGTTAAAAGTCGCCGTGGCAGATCTGCCCGGACTCAGCACGCTGATTAGCCAAATTCTGTCGCAGAACAAGAGCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 175012-174144 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUJK01000004.1 Pectobacterium brasiliense strain Y29 Y29.scaffold4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 175011 28 100.0 32 ............................ AGCGAACTGCGGCTTTTTAGCGGATGGGGCGA 174951 28 100.0 32 ............................ AGCATCGATCAGGTCAATGCCGGGATGAAGAT 174891 28 100.0 32 ............................ ATAAGCACTGAATTCTCAGCAACCAACGCATC 174831 28 100.0 32 ............................ AAAAACATTAAAGATAAGCGATGGGGTTCCGT 174771 28 100.0 32 ............................ CAGAAACATCAAAATTACTGCCTGCTTCAAAT 174711 28 100.0 32 ............................ TGTCGTTGTGGTTCCAGTTATGGTGGGCTCAA 174651 28 100.0 32 ............................ AGCGTCGGGCGGAACCCTGTTGATTCCACAAT 174591 28 96.4 32 ...........T................ AGATCGCCGGCGTTTAACTGCCGCTGGTAGTA 174531 28 96.4 32 ...........T................ ACGTAGCAGAATGCTGACCTGCTCATTTTCTC 174471 28 92.9 32 ...........T.C.............. AAGATTGGTGATGCCAGAACCAAATCGGGCAT 174411 28 100.0 32 ............................ TATGGAGCCATGCACAAATATTTTGCAGGAAT 174351 28 92.9 32 ............T..A............ TCTCCCCAGTTGCGCTTACCTTTTCTGGGCGT 174291 28 96.4 32 ............T............... ATGTCAGCGAAAATAATCAGGTGGGTAACCCC 174231 28 92.9 32 ...........A.C.............. ATGAACGTATCGAGAATGCCGTCGTTTTTGTG 174171 28 78.6 0 ...........T.C......T...TCC. | ========== ====== ====== ====== ============================ ================================ ================== 15 28 96.4 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : TGCGTGACGGAGGTGCCAGTTCCCAACATCACCACGCTGGTATTGGCGATGGGAATATTCCAGTACAGAGACTGGTTTCCTTCCTCCGTCACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGCTGGAGATAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATATATTTTCTGCCGCAATCGATAATAGCTGTGATGCCAGCGAAATAAATCGCAGGCTAATTATTTGATAAGAAAAATATAATCTTCAGAAAACTAACGAAAATCAGATTATCACAGTTGTATATGAAAAATTCTGACCGCAAAAAATATTACCCAAACACAGACCCTTTTTATTTGGTCTATTTCACAGGCTTAACAATCAATGAGTTACAGATGAGCTGAAAAAAAGGGTTTTTGCAGGGAAAACGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTGATCGGGCTACT # Right flank : CGCCTTAAGTGCCATTATCTGGCTATTATCGAGGTAACGTTATCGGCAGAGTTTGATGTGTTATCGTCTTTAAACAACGTATTTTTGATTCCCTTTTCTCGTAACATTTTTAAGTAACGGGTTTCTTTGTGGGGAATAGAAAATTGCGGATTGAACGTTATTAACATTTAAAAACCATCATTTTTCCGTTAAAGTTCCTTTACAGGGAAATAGTGCGTTGACTTAAGTAAAATTCAAAGGAATGAGATGCTGTGAAATACGATCCGGTTTTAAAAACGCTTGTGGATGATGACTATCGGCTAGAAGATAATCTTGATTTTAAAAAGCAGCATGCTGATATTAACTATCAGAAATTACATGCTCAACTCAATGAAATAAATAACGATAACATTCATGCCATATTGACTGCGCAGGAAGCGACGTATTTTTTACAGACGTTATGCACCCCAAATCCCAATCAATCGTGGAAAACGGCCATATTTGTCTGTACCGATCCTGTT # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 183636-184082 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUJK01000004.1 Pectobacterium brasiliense strain Y29 Y29.scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 183636 28 100.0 32 ............................ CGTAGCGGGAGAAGGCTCTCCCCGTGGGGTAT 183696 28 100.0 32 ............................ TGAATATGTCATTCAACATCTGCCGCAAATCC 183756 28 100.0 32 ............................ TGAACGCCAGTGCCGTATTTTAAGTCCGTAAC 183816 28 100.0 32 ............................ GCATTGGCCATGCACCAGAAGCTGTTACGGAA 183876 28 96.4 32 ...........C................ ATCAGATAATTTCCTCATCAAACAGCAGTTCA 183936 28 92.9 32 ...........C.C.............. ATCGAGGACGAGCTTTGCGCGTCCATTGGATA 183996 28 92.9 32 .......A.........T.......... ATGACTGATTTATTGAGCAAAGAAAGGATGGA 184056 27 75.0 0 ............GC......-..C.GCG | ========== ====== ====== ====== ============================ ================================ ================== 8 28 94.6 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGGCTCTATCCACGCTGGAGCAAGCGGCCTGGCTGAAAGGATTGCGGGATTACACATTGATTTCTGAGTGTAAAGCCGTACCCAACGGCGTGAAATTTCGCACCGTACGCCGCGTTCAGTTCAAGAGCAGCGCTGAACGATTGCGCCGACGCTCGGTGAACAAAGGCTGGCTAACGGAAGCAGAAGCCGCAGCACGCATTCCCGATACGGTGGAAAAACGCAGCACCCTGCCGTTTGTGCAAATTAAGAGCTTGTCCAACGGGCAAATGTTCTTCGTGTTTGTGGAACATGGCCCGTTACAGGATGCACCTATCGCAGGACGCTTTTCCTCCTACGGCTTAAGCGCAGAAGCCACCGTACCCTGGTTCTGACCCTTTTTTGGCGACCAGCTGCAAGTCATTGATTTTTAATTGCGGTTGGTCGCCCTAATAAAAAAGGGGTTTTCGAGATAAAATGAACATTCTCTTTAACAATCTGGTGGTTAGATTAAAAACCTAACC # Right flank : GATTATCGGGATGCGTCGCTGCCGCGACGCATTTTTGAGGGCTACTCCCCGTTGAGGGTAACCACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGCTCGCACAGGTAGATACCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTAGTGATGGGAATCGTTAGACTGTTGCCGAGCAGGCTACCTTTTAGGTGCGCGGGCATGTCGTCGCTACCTTCATATGTATGGCGGTAATACGGTTCATCCTCCGGCACTAAACGATTAAAAAAGCTCTCGAAATCCTGCCGCACCGTGGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGTTTGATGAACACATGCATCAGCCCGACGTTTATCTGGCGCAGTCCAGTAACCTGCGCCAGTATTTCGTCAGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGTATCCACATCGCCGCCCCCTGCTATCAGGCTTCGCGTGCCAGAATCGG # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //