Array 1 31-990 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADKM02000125.1 Ruminococcus albus 8 contig00118, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 31 36 100.0 30 .................................... ACAGTCAAGAACGTGATTCACACCTGCTTC 97 36 100.0 30 .................................... CTCAGACAGGACAGATACCTCCTGCACTGA 163 36 100.0 30 .................................... GAATACGCTGTATTCCACGAAAACGACATA 229 36 100.0 30 .................................... ATACGATCATCGGCATAACTAAAAGATATA 295 36 100.0 30 .................................... GATAGCTATAAAAAGCCTTGCTTGCCAAGC 361 36 100.0 30 .................................... GCGTATCACTACATGTACGCGACTACCGTT 427 36 100.0 30 .................................... ACCCCAGACCCCGAACCCGACCACAACAAC 493 36 100.0 30 .................................... GCACTTTTGCTGCTGTATATATCTTGTCGA 559 36 100.0 29 .................................... TCATTTGATTGCCTTAGCAATGAATGAAC 624 36 100.0 31 .................................... TTACACAACTTGTTATTATTCCTGCGGCAGA 691 36 100.0 30 .................................... GAAGAAGAGCAGGAACAGCTGTTCCTTAAA 757 36 100.0 30 .................................... ATACTTGTATCAAAGCCCTCAATAGCAGGC 823 36 100.0 30 .................................... TACAAAGTTTTGCACTATGCAACAAACATG 889 36 100.0 30 .................................... GTCACCTTTGACCGCACTAAAAGTCACCTT 955 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 15 36 100.0 30 GTTTTAGTCCTCTGATGAATATTGATAAACTAATAC # Left flank : GCGAAACATTATCATACCCTACAACAACGCG # Right flank : ATAGACGATAAGTACAATTGGGAAGAAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTGATGAATATTGATAAACTAATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [28.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 30899-29515 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADKM02000117.1 Ruminococcus albus 8 contig00008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 30898 33 100.0 33 ................................. ACCTTTATGCCGAACCTGCAAAGATTTTGCAAA 30832 33 100.0 36 ................................. ATCACGATTATCAAACAAACAACTTGAACAGCGCAT 30763 33 100.0 35 ................................. ACGCCCGACAAGCGAAATGGTCAGATAATCTACAG 30695 33 100.0 36 ................................. AACCCGCAAAAGACAAAGACCTCCCCGCATGGGTGG 30626 33 100.0 35 ................................. TGGACTTCCTGTGGCACACTGAACGCCACGAACTG 30558 33 100.0 33 ................................. TTACAATTTCGCCGCACTCATTGTCGGCGTAAA 30492 33 100.0 34 ................................. AAGAACATTCCCTCAGCGCTTAAAGAGACGTTCT 30425 33 100.0 36 ................................. GTAGTAAAACTGCCCGGTCTTCCTGTGCCTGCGGAG 30356 33 100.0 35 ................................. AGCAAGCAAACTAAGAACGCTGTTATAGGAATACC 30288 33 100.0 34 ................................. ACATAGCTTGACCCGATTGCAAGGGTGGTAGATA 30221 33 100.0 36 ................................. TTGCTTTAAGATGGCGGTAAACTTCTGCCACTTCTG 30152 33 100.0 34 ................................. TCAAATACGGCGATACCCTTTTCGTCGGTCACTG 30085 33 93.9 34 ............AT................... TCCTGAACACGGCGAGGGAGCGACCTCAGCTCAC 30018 32 87.9 35 ............A....A-.T............ TGATAGAAACCACTGCTCTCTCGCATAACGACATT 29951 33 93.9 34 ............AT................... AAGCATCGCTGTACGCAGGAGTGCCGGAAATGTT 29884 33 93.9 34 .........T..A.................... TACGACATTCCTGCTCCCGGTGGCAGCGTGAGTG 29817 33 100.0 35 ................................. TCTAGTATAGGCAAGCCCTCATCCTCAAACAGAGC 29749 33 93.9 34 ............A.A.................. ATCGCTGTGACCACTAAGGACGGTCATGTGTTCT 29682 33 87.9 34 ......T..T..AT................... GCTCAGATAGTTGCACCGCTGGTAGTTGCATCTG 29615 33 93.9 35 ............A.A.................. TTCCCGACAAGCGGAGCTGCGATACTATCAAGGAA 29547 33 90.9 0 .......A....A.A.................. | ========== ====== ====== ====== ================================= ==================================== ================== 21 33 97.0 35 GTCGTCCCCCACGCGGGGGACGTGGATTGAAAT # Left flank : CGTTGGCTTGATGTTGTAGGTGTCGAACTTAA # Right flank : CCTCCTGACCTAGCTTTATCGCGACCTTTTTAGGTCGTCGGAAACCAAATTTAATGGATACAGGTATACCAGACACGAGCCGCAGTGCTTCCTGCGATGATAAGATAATTTCTGCGCTGATAAACGAGTTTCTTGATACGCTGACGCAGAATAAGTGTGATATGTTCGTCAAGCGATACTGGTACGGTGAAAGTATAGAGCAGATAGCAAAAGAAATGGGTTTCACAAACAGTAAGGTAAAAACCACTCTTCACAGAACGAGAGAAGGTCTAAGAAAATTTTTAGAAAAGAAAGGGGTATCACCATGAACTATCGACATTATCAGCATTATCGAACTCTAATCGTACCGATGATGCTGATAGTTCATTTTTTCACATAGACCAAACTGCACTGAACTTGTCGTTCTCAACGCCGGAAGGATCTGTGTATCATTATACCGTACTGCCAACAAAAAGGACGGGCATTTGCCCGTCCTTAAGATTTTTTATTCTGCCGAAACT # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCCACGCGGGGGACGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCTCATGCGAGGGACGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.60,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 27-523 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADKM02000079.1 Ruminococcus albus 8 contig00132, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 27 36 100.0 30 .................................... CTTATAGTCATATACTCCCGCCTCTTCATA 93 36 100.0 30 .................................... TTCCTTTTTTATGGTATCCTTTTCACTTTT 159 36 100.0 30 .................................... GTTGGTGTAGTTATGCTGTCTAAGTTCACC 225 36 100.0 30 .................................... TTGCAGTCATCATGTCGATATCAAGGTCTT 291 36 100.0 30 .................................... CCGCCAACGATGGAAGTATAATCGCCCCGA 357 36 100.0 29 .................................... AACATAGCATGTATCTAATATGTTAAATA 422 36 100.0 30 .................................... CTCTTCGGGAACAAGGTAGCCGCCGTCTTC 488 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 100.0 30 GTATTAGTTTATCAATATTCATCAGAGGACTAAAAC # Left flank : AGTAAAACAAACTACAGGAGTTGGTGG # Right flank : CTTCTGTTCGTGAGACATCGCTGCCACG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAGTTTATCAATATTCATCAGAGGACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [26.7-20.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 106479-105333 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADKM02000040.1 Ruminococcus albus 8 contig00034, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 106478 31 100.0 35 ............................... TACGAGAATTTCATTTACAGCATTATTCTTCTTAT 106412 31 100.0 36 ............................... CTCCGTCTGCTCCAATGAAGCCATTTCCGTCGACTT 106345 31 100.0 33 ............................... TTCATCATATGTTGTAGTATCTTTCTCGTTTAT 106281 31 100.0 34 ............................... ATAATAGACTTAGCGTTTTCACCCTCCTTAATTT 106216 31 100.0 33 ............................... GCCGATGAACTCATTAAAGCCCTCAACACCGTC 106152 31 100.0 37 ............................... AGATGTACTCTACATAATCGGCGGCGATCATATCTGC 106084 31 100.0 34 ............................... ATTCTCTCACCGCCTTCTTGATTTTATCATACAG 106019 31 100.0 32 ............................... TTATCTGCATAAAAATCGTTGTGTTGTCTTAA 105956 31 100.0 35 ............................... TTGTCAAAAGCGACTTCTCCCATCTCCACATTCTT 105890 31 100.0 36 ............................... TTATGTATTTTAATACATTTCATGATTGTTGGTAAA 105823 31 100.0 35 ............................... CTTTTCTTTCTTCTTACCAAATAACATATTATTAT 105757 31 100.0 33 ............................... CTTCATGTTGCGGCGCCTAATACGTTGCATTGC 105693 31 100.0 36 ............................... ACTCATACAGTGCGGTTGCAAAGAATTCGTACATTC 105626 31 100.0 35 ............................... GAAATGCTCCCGATTTTAATTAGACACGCGCCAAG 105560 31 100.0 34 ............................... TCAATAGTCTGTTCAGGAAACGCACCGTCTTCAG 105495 31 100.0 34 ............................... ATATGTCACACCTCCTTTCCATATCCGTCAACCG 105430 31 100.0 35 ............................... GTCGGATTATGGTCATCGACCGTGAATATTGATCA 105364 31 93.5 0 ..........................A...A | C [105335] ========== ====== ====== ====== =============================== ===================================== ================== 18 31 99.6 35 TTGTATCTTACCCGTGTGTGGGAATTGAAAC # Left flank : GATGCCTACGCTAACCATAAGAAGAAAGAACTGGCAGACCTGCTGGGATATCCCGAACTTGCGAGAAAGTCGGAAAATGACTCTCTGAACAACAAGTTTCTTTTAGTTGACAGCATGGACAGCTGCAAGCAGAATGATTTTGAAATAGCGGAGGGACAACTTGAACTATTCAAGAAAATAGCAGTGGGATATCTGTACATAAAAGCAAAGCGCAATCAGGTCAACCATTCGGGAGATGATACCGATATGAGGAATATACAAATGATACTTGAAAAGTACGGATACTCAGCACAGCCGGATAGTATTACTGATAATATACAGAAGTTCACAAGCCTGCTTCGTGCGAACCCCTGAAAAACAGCATAAAAAAGCAACACAGAAAACGGTGTTTCGCACCGTTTCTGTGTCATTTTTGTTCTATTTTTGTTTAACAGATATTATGCAATATTGACAAAACCGACATCTTGTGATATAATCTCATCAAGGGGCAATACCTCGCT # Right flank : AAAACGACCCTTTCGCTTTTACACGAAAGAGTCGTTTTTGTTTTACAGAATTATTCAGTTGTGATATCGGGTCATATTCATCGCTTCCATATAACTCCTGTAAATATCCGAAAGCTGTGATGCCGTTTTTTCTACCTCATGGAACTTTTTGAGATACTCACAAGTTACATTATGAGGGATCATTTTTATTTCCTTGCCCTCTTTGGTGTAGTATTTTCTGGGAACATGGCATTTGAAGATATCATCTATGCTGTTCACTGTTGCAGGGTCGATTATATCAGACTCCATAAGAAAACCAAACAGCGAATAGTATGTTACAGCCTCAAACTGGGTGGATACCTGTTTAAGCAGTCTGCCGTCGGAGTACGGTATATAGTACAGCATTATTTGCTCGCTTGAAAATGTACGCTTGCATATTTTTGAATTCTTTTGCCTTGTTTTATCGATAACAGCTTTAAAAATATCCAGTACCTGACGAATATTTTCCAACTTCTCGGGAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGTATCTTACCCGTGTGTGGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.06%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.40,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA //