Array 1 1689-2 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDCA01000004.1 Listeria monocytogenes strain ICDC_LM0449 LM0449Scaffold4_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1688 36 100.0 30 .................................... GGCGATTCTGTTGAAACTGCAACGAAACTT 1622 36 100.0 30 .................................... CCACGTCAGACCAAGAACTTAAAACTATGC 1556 36 100.0 30 .................................... CTAAATTCATGTTGCGGGATGTTGTGGATG 1490 36 100.0 30 .................................... GAACTTCTTCACCATCCTTCATTTCTGTTT 1424 36 100.0 30 .................................... TCAGACTTCTATATCCACAATAAAAGCCCT 1358 36 100.0 30 .................................... GCGAGTCAATTCATCAAACCCAATCAGAAA 1292 36 100.0 30 .................................... GTGTACACGATAGTCCAAGTCGGTATTTCC 1226 36 100.0 31 .................................... CTCACGTTGTCAAGGTCAAATTTTAGATATG 1159 36 100.0 30 .................................... GAGGTTCGTGGGGGTAATCCCGGCTTGCGA 1093 36 100.0 30 .................................... AGAGGCAACGAGACTACAGACGCACTTAGA 1027 36 100.0 30 .................................... TTTGGTCGAATTCTTCCGCATCTTTAAACT 961 36 100.0 30 .................................... TTAATGAAGAACTAGAAACAATTGAAAACA 895 36 100.0 30 .................................... GCACGTATGATCGTCTTCTTTGATGACCTC 829 36 100.0 30 .................................... TACTCGTATAAAAATCAAGAGAGACGTATT 763 36 100.0 30 .................................... CTTCCGCGTTACATGTTTGACATCAAGTAA 697 36 100.0 30 .................................... GGTTGTGCCGTCACCCGTTGGTGGTAGGCT 631 36 100.0 30 .................................... TTTTCTTTTTCACGATGCGATCGAACGTTT 565 36 100.0 30 .................................... AGTGCAATATTTAGCGTACACATCTTTTAC 499 36 100.0 30 .................................... TTGGTCAATAGATGACTGTATTTCTTGCTC 433 36 100.0 30 .................................... TGAAACACACAACATTTCAGAATGGCTTAG 367 36 100.0 30 .................................... ACTTACTGAACAACATTGATTACCACAGTT 301 36 100.0 30 .................................... TAATAAACAAGAAATATTACTTCATGAATC 235 36 100.0 30 .................................... CACTATCCACTACAGTGATTTGTATTGTGC 169 36 100.0 30 .................................... GTAATCCCAATTAACCCCGCAGAGGGTGTA 103 36 100.0 30 .................................... TGTCATGGCGAAAGGTAAAACGGTCGATTG 37 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 26 36 100.0 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCACTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : CA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 6022-5389 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDCA01000013.1 Listeria monocytogenes strain ICDC_LM0449 LM0449Scaffold12_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6021 36 100.0 30 .................................... GTGGGAAACGTTAAATATTATAAAACAGAT 5955 36 100.0 30 .................................... GCATCGTACCCCAGTTCATGAAGCGCGGTA 5889 36 100.0 30 .................................... ACAAAACTCTCTAATTCAATTGCTCCATCA 5823 36 100.0 30 .................................... TTTATAAAGAATACTTGCGGGGCATAAATG 5757 36 100.0 30 .................................... GTCTAAACTTGGAATATAACTTAGGTCTTG 5691 36 100.0 30 .................................... ACTGATGAAAGTATTTCTCCAATGACAAGT 5625 36 100.0 30 .................................... TTAAATACGATGGAATTAATCTATCGATGC 5559 36 100.0 30 .................................... TCAAAGAGTTTATACCTGTTTTGATTGAGT 5493 36 100.0 30 .................................... TAATATTCTTCCCCCCCATCGCTAACAGGG 5427 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [5392,5395,5400] ========== ====== ====== ====== ==================================== ============================== ================== 10 36 98.6 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : | # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCACTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATCTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAGTTTAAAAATCTTGTATGATTATATTCTAAATACGAGTAAAGATAATGACACGCTTGAACTATATACTGCTTGGAAAAGCGAGGAAGATTTCCTGCTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGATAGAGAACTATTAGTAATTAAAAAAGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //