Array 1 1-1774 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXYA01000235.1 Salmonella enterica subsp. enterica serovar Infantis strain BCW_2834 NODE_235_length_6634_cov_1.22132, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 1 27 93.1 32 --........................... TTGATTTTAATGGCGGGCGAATTGTATTTAAC 60 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 122 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 183 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 244 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 305 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 366 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 427 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 488 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 549 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 610 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 671 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 732 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 793 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 854 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 915 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 976 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 1037 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 1095 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 1156 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 1217 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 1278 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 1339 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 1400 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 1461 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 1522 29 100.0 72 ............................. CGGCCAGCCATTTAAACAGCGCTGCAGCGGGGATAAACCGACAGGGTATATGAGCTTATACGTCATGAACCA 1623 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 1684 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 1745 29 93.1 0 A...........T................ | A [1771] ========== ====== ====== ====== ============================= ======================================================================== ================== 29 29 98.2 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.08, 8:1, 9:0.97, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3-1556 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXYA01000503.1 Salmonella enterica subsp. enterica serovar Infantis strain BCW_2834 NODE_503_length_2288_cov_0.933212, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3 29 82.8 32 CGA.CT....................... ATCAAATATCAGATAACCCCCGTCGGCAAACC 64 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 125 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 186 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 247 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 308 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 369 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 430 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 491 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 552 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 613 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 674 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 735 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 796 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 857 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 918 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 979 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 1041 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 1102 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 1163 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 1224 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 1285 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 1346 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 1407 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 1468 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 1529 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TCC # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //