Array 1 277565-278749 **** Predicted by CRISPRDetect 2.4 *** >NC_016645.1 Pyrobaculum ferrireducens strain 1860, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ================================================ ================== 277565 25 100.0 41 ......................... ATATATCTAACGGATCGGCGTGGGGGTGTGGGTTTGCTCGC 277631 25 100.0 43 ......................... TTATTTTGGGGGAGGGAGTTAGGCGGTGGTGGGGGGCGGCCGA 277699 25 100.0 40 ......................... GCGAGTATCTCGGCGGTTGCCAATCGGAGGGTTACAGTGG 277764 25 100.0 43 ......................... TGATCTCTTCTTTCGCCAGGAAAGATACTAGCTTGGCTATCCA 277832 25 100.0 39 ......................... GCATACTGACTGTCTTTAATCCACACAAACGCAGACGGA 277896 25 100.0 48 ......................... GCCAGAGCGCACGCCACAGCGCTGTCGCGCCCCCCGGAAAACCAGCAG 277969 25 100.0 46 ......................... TGATGATGGGATCCTCAGTCATAATCCCGGCGCTTCAGTTTTTTAC 278040 25 100.0 45 ......................... GAAAAGAATATTGGCGCGTATGACTTGCCCGTGCCAGGTGGGCCG 278110 25 100.0 45 ......................... AATACCTTTGCGCAGGTAGGTACATGTCCAAGGCAACCAACCTAA 278180 25 100.0 42 ......................... GTCCACCATGAAGTTCAATGTGTAGTAAGCCTCTGTAGACGT 278247 25 100.0 42 ......................... GGCCTCTGCACCTGCCACGTGGTTGCTGGCACCTGCGTCGCC 278314 25 100.0 41 ......................... AGATTTTCAAGCAGAAGCTTGGGTAAATCTGGAATCTTGCT 278380 25 100.0 43 ......................... GTAGAGCAACTTCATAGGCTGGCAGTGATCCCTCAGCCATCTC 278448 25 100.0 45 ......................... GCGTGCTCTATGACGTCTCTCGCCTCCCGCAGGAGGGTGTCGTGG 278518 25 100.0 42 ......................... GCAATGGGGTTGCCCGGCGGTATGCCCGCGTGCTCCGTCTTT 278585 25 100.0 44 ......................... TCGTACTTACCACCGGTAGTGTAGACCATCTCTATAGACGCCAC 278654 25 100.0 46 ......................... CCCACCAGCGATGTCCCAGTGTAGTCCAGCAGGAGATCGGGGGCGC 278725 25 96.0 0 ..G...................... | ========== ====== ====== ====== ========================= ================================================ ================== 18 25 99.8 43 CCAGAAATCAAAAGATAGTTGAAAC # Left flank : AGAGGGGGTCAGAGAGGTTGCCTAGATAGACCGTGTCGCTGGGACGCCACCCCAGCTTCACGTAAAGCCTCAACCCCAAAACCCACATATAGCCAGAGACGCCGCCGATATCAACCCTCCCTATGTATAGGTACATACCGCCCCGTACCGACAGCATGCGCCTTCAGCCTCCGCAACAACCCGCGCCTTCTGAGCCGCTGTCTCCAACACCCTCGCTCTAATCTCCCTAAACATACCCCCCTGGGAGCCCCGGCATTTAACCATTTTTACAAGTCCAGAACCCCATTTACAAACATATAAACATGTGCACGGCGCGGCGAAGAACGGCGCTGGGTCTCGGCTTTCTCTACACCTCTGGCCCGCCGCCTCTGCGAAGAATGGCGATCGGCAAGCCTGAAAAGAGACATGTATGAATGTAAAGCGTGGCGGAAAAGCGTCCACCGAAGAAGCAAAAAACAGACGAAAAACTTAAAAACCCACAAAAACAATCAAAACCAGCC # Right flank : CTAGTTGTTATGAAAAAAAGGAGTGAGTAGGGATTTCGACGTGCGGCGCGCGGACGTGCCGCTGGCCGTTGGGGGCATATACTTAAGCTGGCCTCGCGCGCTCAACGGCGGAGTCCGCGGCTCCGGCCAGCAGTTGCAATCTACCTCCACATGCGCCGCCGGGAGAGGCGTATGGGGTAGAGGCTGGGGTTGTGAAGCCCCTGGACTCCGACCTCAAGGCTGGTCGTAGTAGCTGTAGTGCTCCCAGCACTCCTCCCCACCCCCTCTCCTGCTAGTAAAGCGCCTCTCTGCGGACATACAGCCGGCCGCCAGGGTAGGGATGTGGTAATCTGTACGGCGTTCTGGGACGGCGCCGTAGATGGGACGGCCCCCTTTTCCTAGACTCCCAACTACTCCACTCCTCCCCGCGCTCCGAGCCCCCTTCACGGCCTCTCTTCTGAGGCTCTGGTAAGGTTTTTCCCGCCTCGTGGGGGGCCTCGCTTCGTGTCTGACTGGGTTGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGAAATCAAAAGATAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: F [matched GTGGAAATCAAAAGATAGTAGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 2 762867-761756 **** Predicted by CRISPRDetect 2.4 *** >NC_016645.1 Pyrobaculum ferrireducens strain 1860, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ================================================ ================== 762866 25 100.0 41 ......................... GCCCTTGAAAAAAGCGTGGGTTTAGTTTATGGGACTAGGGA 762800 25 100.0 40 ......................... GCAACAGTGTAGAAGTTGCCAAGTTGCTACTAGACGCCGG 762735 25 100.0 43 ......................... TCACAGCGCGGAGGTACTCCACGTCAACTGCGTTCCTTATGTC 762667 25 100.0 43 ......................... ATATATCTGTCTGAGGCGGCTCCCCCGCTCTTTCTGGAGGTAT 762599 25 100.0 39 ......................... CTGGGGCCAGCTAAACGCGAATTAATCTTCCTCAGGACC 762535 25 100.0 48 ......................... ATAAACACCGGGAGGAAGCTGGGGATCCGCGTCAGGGCGTGCCCCGAC 762462 25 100.0 44 ......................... AGCCTGAGGCTACCCGCCTTGACCCTCCTGAGCCTGGCGCCAGT 762393 25 96.0 45 ..G...................... ACCATCCCTACAACGCAAGCACATGTCATAGTCGCTTAGGTACAG 762323 25 96.0 40 ..G...................... TTCTACCCCGATCACGCTCTACCGCGCAAGTGGATCGCGG 762258 25 96.0 43 ..G...................... GAGGACTGGATTCTGGAGGGGAGGCAGTTTTACGGGTACAGCG 762190 25 92.0 42 ..G..........A........... TACTGGCATGAGAGCTACGCGGAGTGCGTGGCAACTAAGCTA 762123 25 92.0 44 ..G.........G............ AGAATATTGTGGGCGCAGTACGTTGGGTACCGGTGGCACTCATA 762054 25 100.0 43 ......................... CAGACAAGTAACGTGTAGTAATTCAGCACAACCATCTCGGCAA 761986 25 100.0 42 ......................... AATCATTGCCTCAGATATGCCGGCCCACCGGAGTTGCCCGGC 761919 25 100.0 46 ......................... GCGATAAAGATATAGCCATACGCAAGACAGCCGAACCTCTCGCCAA 761848 25 100.0 43 ......................... TACGTCACCTTGACCTGCGCCTGCTGTGCGGCGCCGCCTACGG 761780 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ================================================ ================== 17 25 98.4 43 CCAGAAATCAAAAGATAGTTGAAAC # Left flank : CTCGTGTATATACGCCCCGAACTTCATGGCGCCGTTCGGCTCGGCCCTCACCCTAACCACCCTCCTCAAGTAGAGATCCCGCCTAGACTCGCAGTACCCCCCAACCACGTCAGACACCGACAGCCTAACCCCCAGCGGAGGCGGCTGGACAGGCGGCTCACCCCAACGCCACCCCCTAAGCTCCTCCCCCACCTCCACCCTCAACCCCCTCACCAACCTAATCTCCCTAAACATACCCCCCTGGAAGCCCGGGCATTTAACTATTTTTACATGTCCAGAGCCCCGTTTACAAACATATAAACTTGTGCACGGCGCGGCGAAGAATGGCGTTGGGCCTCGGCGTTTTCTCAACCTCCACGTTGCTGTGCTTGCGAAGAATGGCGGCCGCCCACCCCGAAAAGAGACATATATGAATGTAAAACGCGGCAGAAAAGCGTCCACCGAAGATACAAAAAACCTACAAAAAACTTAAAAACCCACAAAAACCAACAAAACCAGCC # Right flank : ATGATAGGCGAGATGAGGCCGGCCGCTAAAATGCTCGACCGCCGAGGTGATCATAGGCGTGGTGTATCAGCACGGCACGTAGTATCGACTATCGATACAAAAAATTTAGCTTTTAGTCGAAGTAAAAAATAATACCGATGTTGTTAGCAAGCCATGCGAATAGCTAGAAATAACTATATATCGGTGATATACGGCGTAGTTGTAGGGCTGTTGTTGATAGAGATATCGTTGGTATTGGCAACTCCGTTTGCCGCGCAGAGCTGGTATCCGTTCTTCACGGTGGTTGCGTCCGCCGGCTATAAGACTATCTATCCAGGTCCTGCCCTGATCGCGGCCATGTTGGCGCTCGGGGTGGCCTCGGCCTTCGTCGTGCCCAGGAGGTACTACGGCGTCTTCGTCGTGGTGTTAATCATAGCCGCTGTAGTAGCCATAGCGATCCTAGGCTCCCTCGCCTCCTGCGCTACTTGTAAGTGGTGGTTCTGTAGCAAGGTGCTGAGTTG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGAAATCAAAAGATAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: R [matched GTGGAAATCAAAAGATAGTAGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 3 766999-768372 **** Predicted by CRISPRDetect 2.4 *** >NC_016645.1 Pyrobaculum ferrireducens strain 1860, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ================================================== ================== 766999 25 100.0 43 ......................... GACAAGAGCAGTAGCGCGATTTCCTCTGTGCTCATCTTCTCAA 767067 25 96.0 43 G........................ CACCCCACGTATGTAAGCGCGGTTCCTAGGCCGTAGAATGCTC 767135 25 100.0 44 ......................... TAGTAGTACACCGACGGGAGGTACACCGCGCCGTACCTCCCCAC 767204 25 96.0 41 G........................ TGCTGAGGAACTCCTCCCAGGACCAGGGGACTGAAATCGAC 767270 25 96.0 39 A........................ CACTGGGTCTAACAGCCCAAGAAGCCCGGCGAGCGCCAG 767334 25 100.0 34 ......................... TTTCACAGAGGCGGGGCCGCCCACGCGATGCCCA Deletion [767393] 767393 25 100.0 43 ......................... TCTAATTAGTTTCCGAAAGCCTGGACGCTTCAGTGGATCCTTA 767461 25 100.0 40 ......................... TAGATCTATATCTCTGGTTGTGAGTAGCAGAACTTCCGAA 767526 25 100.0 50 ......................... AAGGATGAACCACGCGTACTCCGTTATCTTAACCCACTCCCCCCCCCCCC 767601 25 100.0 43 ......................... ATGTCTGCGTGTGCGCCCAACACTCCGTCTTCGACGGGGCATA 767669 25 100.0 43 ......................... TCGAGGAGCTGTGGGGCGAGGTGAACAAGGCTATCGAGACGGT 767737 25 100.0 45 ......................... AAACGGAGGCGTCGAACCCTGTCCACAAGGGGCTCTACATACTCT 767807 25 100.0 44 ......................... AGCTCCATAACTTGCATTGTCTTTGCCGTTCCGGGAGGACCAAT 767876 25 100.0 41 ......................... GTAGAGTCTGAGGCAACCACGCGGCGTCTTGACTACCCTCT 767942 25 100.0 40 ......................... CAGCGTGCCTGGCGCGGTCGCATTCGCAACTATGGACATA 768007 25 100.0 42 ......................... CTGTATGCGACACGTCTTGGAGCCTAAACATGTGCAGCCTGA 768074 25 100.0 44 ......................... TAACTATTCAACATGTACGCTATGACGCCTCCCCGCAACTCAAA 768143 25 100.0 41 ......................... CGATGTAAGCGGCTCTATGGCTGGGGGGCGTAAGCCGCAGT 768209 25 100.0 45 ......................... CGGCTGGCCATGTCGGGCGTGTGGGCCACCAGGAAGGCGGGCTTC 768279 25 100.0 43 ......................... ATCGACGAGATACTGTCGATGTCACGCGAGAGGTCTGAGGTGA 768347 25 100.0 0 ......................... | G [768360] ========== ====== ====== ====== ========================= ================================================== ================== 21 25 99.4 42 CCAGAAATCAAAAGATAGTTGAAAC # Left flank : TTAACTGTGGCCAGTACAATCTTCTCCGGCCTGCATCTATTAGCCACAGCCATTACGTGGTGGTAGGAGAAGCCCAGCGAAGCCACCAAAACCCGCATACAACACCCCCAAACCCAATTTTTATTTTTTCCCTCCCAACCGACCAGCCCCTCTCTACACCGCACCTCCAGCCCCGGGCCGCCTCCGGGCAGGCCCCGCCTTACCCGACCGCGGCGCCTCTTGACACTACGCTAAAACGCAAATGCCGCGAACAGAAGAGCACCATAGACAAAACAATATGCCTACATAGAAATTTGTAAATGAAACCGCCCGGCGTGGCGAAGAATGGCGTTGGGTCTCGGCGTCTCTTAAACATTCGGCCCGCCGCCACTGCGAAGAATGGCGCACGGCCAGGCCGAACAGCGGAATATATGAATGTAAAACGCGGCAAAACAGCGTCCACCGAAGAGACAAAAAGCAGACGAAAAACTTAAAAACCCACAAAAACCATCAAAACCAGC # Right flank : CGTGTGTGTCCGCCGTGAAAGTTCATCTAGCTGGAAATCGAAAAGTTGCTAGTGATGATGGTCCCCCTTAACGATGTATTAGTGACGACGATCTCCTCCCCGCCGTGGTCCCGCTGACTGGTAGTCAAAGAGGTCGGCTTTCTCTCCGGTCGCTCTCCCTCAGCTGGAGGTCGAGAAGCGTGAATTGGGGGGCGGCAGATGCCAGGTCAGAGGCGCAGAGGCCCGGCGCCGGCGGCGTGCGGGCTTGTCTGGGCGTGGGCGCGGCTGGTGTCTGCGGGTGCTGCGGCGTGGCTGTGCGGCTGGTCGGGGCGGTTGGCCGGAGGCTGTCGGCGCGTGGGTTGCGCCGGGGCGGTGCGCTCGGGGCTCGGCCGATGTAAAGGTTTTATAGAGCTGTTTTTTATGTGGGTGTGAAAAAAACGGAGGCGGCTTCTGCGGCTGACGCGGGTGTGCGGGAGGTTTATCTGAAGAAGCTTGAGGAGATCAAGAGGGCTGTGGAGGAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGAAATCAAAAGATAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: F [matched GTGGAAATCAAAAGATAGTAGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 4 795088-798822 **** Predicted by CRISPRDetect 2.4 *** >NC_016645.1 Pyrobaculum ferrireducens strain 1860, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ================================================== ================== 795088 24 100.0 44 ........................ CTGCGGCGCGCCGTAAAGCGCTACGTGGGTCGTCTAGTTGCGCG 795156 24 100.0 44 ........................ CTGGGATTAGGAGCCTGTGCATGTGTATAACGCGCTCGGGGAGA 795224 24 100.0 43 ........................ CTTCTTCGGCGCGGCGCTGTTGCTGAGGGCTTTGTTCTCGAAG 795291 24 100.0 42 ........................ CATCACCCAGGACCTGTGGATCGGCCACGAGGTCGACTTGAA 795357 24 100.0 38 ........................ CCTCGACTGGAACGGTCTCCCCCGCGAGCCACCTCTTT 795419 24 100.0 40 ........................ GACGTGTTTATGCCCGTGGATTTATTGCGTATGGGCTTCA 795483 24 100.0 46 ........................ CTTTGATGTGTTGCGCGCTCATTTCGTCGTCGGCGGGAGCAGGCCG 795553 24 100.0 42 ........................ CGAGTCGCTCCGCGAGCTGGCGCTCCTGGCTCCTCAGTTGCT 795619 24 100.0 42 ........................ CACCTCGTCGACATCTTTACCGAGCCACTCCTTCTCGTATTG 795685 24 100.0 39 ........................ ATGATGGAGCTAGAGGACTTCCTCGTGTTGTCTTTGGCG 795748 24 100.0 39 ........................ ATGATGGAGCTAGAGGACTTCCTCGTGTTGTCTTTGGCG 795811 24 100.0 40 ........................ CTTCTCCTCCTCGACCTCCTCCTCTTCCGATTCTCTCTCC 795875 24 100.0 41 ........................ GGAGGCCGTGGCGAGCTTCTTCGGCTTCGAGGCGCCCAGGG 795940 24 100.0 43 ........................ TCGCTCTGCTGGCATACGGCTTCTACGTCTACTACCAGACGCT 796007 24 100.0 43 ........................ ACTAGACCTCCCGAGGGACCACGTCATCGACGACATTTTACTC 796074 24 100.0 43 ........................ ATGTATGATACTGCAGATAGACTACACGGCGATTATCGAGCTA 796141 24 100.0 43 ........................ CGTTGAAACTGATCGTGATCACTGGCTCCCACGTCCTCCGCGA 796208 24 100.0 38 ........................ TCTACGTCCAGGGGCTTGACGGCCCTCCGGCCCGTGCA 796270 24 100.0 47 ........................ CCCCATGGGCACGAGCGCCGTGTAGAGCTGCGGCCCAATCCGCCGCG 796341 24 100.0 46 ........................ ATACCAATACAACACGCTAACCATCGTCCCAGACACCTCAATCTAC 796411 24 100.0 37 ........................ TCACCACGCGGCCGCACTGCCGCGCCCTTAAAAACAC 796472 24 100.0 44 ........................ CGTGCGTATTGTCTTGCTACTTATGTCGAAGTCTCTCGAAACGA 796540 24 95.8 44 ..................G..... CTATACTCCTCTGGAAAAGTGCCGCCTTCTGTTGCGAGAAGTAT 796608 24 100.0 43 ........................ CGGTTATGGCGACTCTCCACGGGGTCTTGAGGAGCATGATAAT 796675 24 100.0 37 ........................ GTACTACAGCCTCTGGTCCACCGGGAGGTTGCAACTG 796736 24 95.8 43 ...................A.... CTCTACTTCTTTCTCCACCCCAGTCTCCATAGCGTATACCTGT 796803 24 100.0 38 ........................ AATACCGAGCCAAAACGGATTGGGCCGCAGCTCTACAC 796865 24 100.0 38 ........................ CTTGACACCGAGCTTCTGAAGCCACTCCCGCACCCTCT 796927 24 100.0 46 ........................ ACATCACTATCAAGACCGGCGCCGTGCTGAACTACGACGAGTTTGA 796997 24 100.0 42 ........................ TTACTCCTCAGCTCCTTGATGAAGGGAACGGCGTGCCCCGCG 797063 24 100.0 45 ........................ ACCGAGAGGCTGAGGCAGGTGACCCTGCGGGACGTGGAGGATGCG 797132 24 100.0 40 ........................ TAAGTATACTCATTGCTTCTTCATGCCTTGTCTTACCTGT 797196 24 100.0 42 ........................ TACTGCTCGGTCTCTGCGACTATTCTGTCGTCGTACTCAACG 797262 24 100.0 45 ........................ TACGTACGCCCACGCGCTCACAGTCAACTTCACCTCGCTCAAGCT 797331 24 100.0 39 ........................ AGCCTCTCGAGAGCCTTCTGCCTGTCGACTGTCAGCACT 797394 24 100.0 47 ........................ GGTGGTGTATCAAGACGCGTGACGCAGGCCTGTCGCCGTATGATCCG 797465 24 100.0 39 ........................ ACCACGGCGGACTCCACGAGACCTCGCGCATGCTCTGGA 797528 24 100.0 38 ........................ CTGCGTCCGCGACTTCAGCTTGGCCTCCAGCACGGCGT 797590 24 100.0 45 ........................ GCGGATAAGGCTCAGAGCCCCCAAGCGCCTCCCGCGGTCTCCGCA 797659 24 100.0 46 ........................ CACTGCCCGAGTTGCCAGGCACAGCCGGCTTGTCGGTCCTCACATA 797729 24 100.0 45 ........................ GCCACCTCGGCATGCGCCTACACGGGCCGAGGATCGTGCTTGTCT 797798 24 100.0 41 ........................ GCGGTGCGATCCCACCTCACGGCCACCAGCTCGCTGTCGCC 797863 24 100.0 45 ........................ CGTGTACGTGTGGCCACACCCGGTCAGGTCAGAGCTGATAGAGGC 797932 24 100.0 40 ........................ GCGCAGTCTGTAGGCCGGCAGAAACGTGTCGGTGTTGTAG 797996 24 100.0 43 ........................ TCTCCAGCTCTTCCCTCGACACCTGTTCGTACGCGCTCCTGTA 798063 24 100.0 40 ........................ ATTTCGGCCATAGCCTACCTACCGGGTAGCATACGTGCGT 798127 24 100.0 50 ........................ TGTAGTAGCGTTCGGCGATCATGTGAGTAAGCACAGCTGTGTATATAAGT 798201 24 100.0 40 ........................ TTCAACAGTCCGGTGGAGTTCATGCTTGTGAGGATGTATG 798265 24 100.0 42 ........................ CCCTCGCCAGCGGCGGCGCCAGCCGCTGGCGCACAGCAGATT 798331 24 100.0 41 ........................ GTGATAAAGATGGCTAGTAGCACCACCGCGAAAAATGGCAA 798396 24 100.0 40 ........................ ACGCTTTTGTTTACACGACGTTGATCGGCGGGGTGTGTGA 798460 24 100.0 42 ........................ ACCATTGGGTCAAGGACGGTGTCGCCAGGCTTTGTATACATT 798526 24 100.0 42 ........................ GTCTTCTACGCCTATCAGCCACGCCCCCACGACGTCTTCGCT 798592 24 100.0 45 ........................ CGATGTGTCTGTCTGCGGTTGTCAGCAGATTCCTAACCGTGTACA 798661 24 100.0 45 ........................ AGGCCAGGTATCGCGAGAGCGATCTTGAGATCATCAGAGACACGT 798730 24 100.0 45 ........................ GCGACGGATGTCGGCTACTACTTCAGCACAGACGTGTGGCTGTAC 798799 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ================================================== ================== 57 24 99.9 42 GTATCTCAAAAAGAGGATTGAAAG # Left flank : CCGCGGCGTCCAGCACCGGCCTCCCCCCGGCGAAGAGGGGAGACACCGCGAAGGGCTTCGGCCTCGCGTCGTGGAGATCACCCCTCCCCAAGACCGAGAGGACGATGGCCTGCACCAGCGTCCCCGAGAAGCCGGACACCGCCGCGCCCTCCCCCAGCCTGCCCCGCACCCACACCCGCCACACACAGAAGAAAACACCCCCTATTAAAAGCATTTAAAAAACGTCGTGCAGAAAGCCCTTTGCATATGTCAATATTTCAACTCCCCTCGGCGGATAGACAAATGTACGTGGGGGATCCAGTTTATAAAACGTCGTGCAGACCCACAGCGAACGGCGCCGCCGAGCTGTTGCCACACGACATTCAACTACCAGAAGCCGCTAGGCACGCTGACACAATGTAGAAAGACAACAAAACACAAGCAACAACAACACAGCAATCACTCCAATACTACACAAGAAAAACTTAAAAACCCACAAAAAACCATGACCAGGAACCCCA # Right flank : GCTCTACCCGTAGGATGATATGCGACGCACGCTACTACTCCAGCCTCTCACAACAGAGGCACGGCGGCGAGCTCTACGAGTTGCTCCTGGAGCATCGTTGACTAGAAGCTGAGATCAAATGGTTCAGAAGGTACGAAATATCAGCAGAAAGATAGATATTAAAAATGGTTAGTACTAATCTACTTTTTTGCCTTTATCCTCTCTCTGATTTTTGCACGGTCAAACAGCTTCATGACGTCGTCGACGGCCTCGAGGAGCTCTACGCCGCGCCTAGTCAGCCGCCAGTAGCCGGCGTCAAACTCAACCAGCTTCAGCTCCCACAAATATCTAAGTTCCGCGTCGTACCCCAGCTTAGAGACGTGGTACAGCAGGTCACCCTCAGCCAGCTCACCGCCATACGCAAACAACACCGCCAGCACCGCGACGTCAGCCACAGTAATGCGGCTAGCCAAATCTTTCACATCTATCATATCACCTCCTCGACGAATCGAAGCACCTCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATCTCAAAAAGAGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GAATCTCAAAAAGAGGATTGAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 5 839154-837468 **** Predicted by CRISPRDetect 2.4 *** >NC_016645.1 Pyrobaculum ferrireducens strain 1860, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =================================================== ================== 839153 25 100.0 37 ......................... GTTGCCCAGCGCCGACGGTGCGTTGAACCTCGGCACG 839091 25 100.0 42 ......................... AAAGTTTATCCTCGACACGGAGGACCACGCCGCGGCGAATAT 839024 25 100.0 36 ......................... CTTATTATAACGGCCTGGCCGCCGGCACTGCCCGCC 838963 25 100.0 43 ......................... TTGGTTTTACGTTATGAAAAGTATCCAGAAGAAACTTTACATA 838895 25 100.0 39 ......................... ATTTCGGATCGTATCTAAAAGGTGAGAGAATAACGCTAG 838831 25 100.0 44 ......................... CGCGAGTGTGGCTATCAGCAGGGCTAGCGCCCTCCCCATAGCCT 838762 25 100.0 42 ......................... TGAGTGATACGCACCACGTGCCACCCAGGAATATCACCCAAC 838695 25 100.0 41 ......................... CTACTATCTCGACGACGGTCTTGATGCTGTCGACTTGTCTG 838629 25 100.0 42 ......................... TCGGCTCTTTTCTCCTGCCTCTGTGTACGCTTGTCAGCCTGT 838562 25 100.0 39 ......................... TCGCCGACTTCTTTAACCCTTATTGCCATGTCCATAACA 838498 25 100.0 41 ......................... TCTTTTTCACGTTCATGCTCTGCGCAGTAGATAATCTTCTT 838432 25 100.0 39 ......................... TACGACTTACGCACAGCGTATAGATGCCCATACGGTTCA 838368 25 100.0 46 ......................... CACATTCATAACATAGCTCATATCAGAGCCGCGGATATTGAGCCTC 838297 25 100.0 39 ......................... TGGATCCAGTAGGCGAGGGCCTGGGCGAAGGTCTCCGAA 838233 25 100.0 39 ......................... TGGATCCAGTAGGCGAGGGCCTGGGCGAAGGTCTCCGAA 838169 25 100.0 41 ......................... CTAACCTCTACTGACGCTGCCTCCTCCATGATTGCGAGCGC 838103 25 100.0 46 ......................... CTGGGCCTTGTCCTCAACCTGACCACCAAGGCCACGTCGCCTGGTC 838032 25 100.0 37 ......................... TGATAGAGGCCGTTGTGAAAGGCCGCAGGCAGGTCCC 837970 25 100.0 41 ......................... TCGACAACTTCCCAGCCTCCGTCAGCCCACAACCTGATCCA 837904 25 100.0 41 ......................... CTAATAGCGTTTTTCACACTGACTTTCAAATCGTTAGTAGC 837838 25 100.0 42 ......................... ACCCAGCCGCTGTACTCCCTGTCGAGGTGGTAGATGGCCTCG 837771 25 100.0 42 ......................... AAAATCACAGTGACGTCCTCCGCCTCCTCCCTCCAAAACATG 837704 25 100.0 41 ......................... TCCCGCAAAATCTCGATATTCCATAGCCGCTTAATTTCGCT 837638 25 96.0 44 ........................T ACGCTTATGACAGAGGACGTTGTGGGTAAGCCGCCGCCCCTCTT 837569 25 80.0 51 .......T..T......T..A...G ATATTGAAACGTAACTACTGTGTTTGAGGATGTCGCTGGGACAACGTCGGC A [837549] 837492 25 68.0 0 ..T..TG..TTG..G.........T | ========== ====== ====== ====== ========================= =================================================== ================== 26 25 97.8 41 GAAGAACCTACAAAAGAATTGAAAC # Left flank : CCCCCACCACGCCGTGGGCTTCACCGGCGTAATCACATACCGCCTAGACGCCCCCGCCAAGAGGGCCAGGTGGATAGCCCAGCTCCTCGGCTTAGCCAGATACATCGGAGTAGGCCACTCCACAGCCATGGGCTTCGGCTGGGTAGAAATCACAACCCAATAAAAACGACAAGCGGAGAAAAACGCAAAAAAGAAACCGGGGAAATGCAACACCCTGATTTCAAACCACTGGATAAATTTACCAACTAGAGAAAAAATACAACAGAAAACAACGACAACACGCTTTAGAAACATATAATCGAATAAGAAGCGCTCCAGCCCCCTCCCATGCACTTGCTCTTTAACTATACAAACATAGTTAATGTTTATCTCTCTACCCAGTGTTTTGGGTGGCGCGCCGTGGTGCCCGCCTTGGCCTAAACCGCGCCGTGTAAAAGTCTCGACGGCACACGAAACATTTATAAAAGAGCAAAAACCAAAATCCCAAATAAAAACCCACA # Right flank : TTGGATGAACGGCCTCTTTAATGTTGAGGGGGCTGGTGGTTGACTGCGGGAGCTTTGCCTGGCGGAGGGGGTTGGCGGCGTGTGCTATGTGTCTGTCGCTGTGTCTGCGGTCTGTGGCGAGGGTTATTTTGCCCACGTCGTAGCCGATTTTGTAGTAAATCTTGGTGTGTTGTGGCGCCGCCGCGTCGGGGTTTGCGTAGGCGAGGCTTGTTGCGTCTGTTAGCGGCCTTCTAGCCGTGGCGGGCGGAGAGGCGGGGCTCCACTTGTCCTTATGCGGTTCTCATGTCTGGGACGTGGTGGCTCTGTTAAGGGGGTAGGTGGGTCTTCTGTGTTTTGTTGGTGGGGTGTGGGGGGTGGGTGGTTACTCTTCTTCGTAGGTGGCGGGGCATTCGGGTGGGTGTTGGTTTAGGTGTCTGTAGATCTCGGCGGCCGCGGGGGCAGATTATGAGGTCTAGCTTGTCGGAGGAGGTTCTGGGGAATTCTAGGTCTGTTAGCTCTCT # Questionable array : NO Score: 9.14 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGAACCTACAAAAGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 6 848207-845780 **** Predicted by CRISPRDetect 2.4 *** >NC_016645.1 Pyrobaculum ferrireducens strain 1860, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================ ================== 848206 25 100.0 41 ......................... AATAAGTAGCCTGGCGTGGTACAAAACGTACTCATATCCAG 848140 25 100.0 38 ......................... TCTATTTCTCTGACCAGTTCTTCAGGCAACAGCCTGTA 848077 25 100.0 41 ......................... ACCCCCAACCCCCAAGCGAATCCCATCCACAGACGTAAAAA 848011 25 100.0 40 ......................... ATCCACATTTCTATAGTTGCCACGATCTGTGACTCCATGG 847946 25 100.0 42 ......................... TAAAATATCAACTAAGCGATAAGGCACTAAATCCAGCCTAAT 847879 25 100.0 36 ......................... TTGTAATCTTTTTGGATGTAGATGTATGGCGTCTTC 847818 25 100.0 36 ......................... TTGTAATCTTTTTGGATGTAGATGTATGGCGTCTTC 847757 25 100.0 36 ......................... TTGTAATCTTTTTGGATGTAGATGTATGGCGTCTTC 847696 25 100.0 36 ......................... TTGTAATCTTTTTGGATGTAGATGTATGGCGTCTTC 847635 25 100.0 38 ......................... TAAAGCTACGTGGCCAAATACAAAATTGTTGGTTATGA 847572 25 100.0 37 ......................... GTCCACCTGGCATAGGCCATATTCTGAGACTCAGCAT 847510 25 100.0 40 ......................... TTTACGCTAGTTGCAACGTGGGGCACGAGCTACAAGTGGT 847445 25 100.0 43 ......................... CCACACTGAGTCGTATGATACACACTCCATGACCCTAAACCCG 847377 25 100.0 37 ......................... CCGCATATCCTAACCACATCACGCAAAGAATTAGCAA 847315 25 100.0 37 ......................... CCGCATATCCTAACCACATCACGCAAAGAATTAGCAA 847253 25 100.0 42 ......................... TAATGTACTCATATCCAGTTCGACTTGATTTTGACGGCCTCG 847186 25 100.0 36 ......................... ATGTCTATGAAAAAGTTTTCTTTGGGGTTTTTGGGG 847125 25 100.0 40 ......................... CTTAGCTATGCCAACGAATGCGCCTCTATCTGCTTTCCTG 847060 25 100.0 40 ......................... TTTTTCTTGTTGTGGCTCGGCGTGGCGCGCGTATTCTCTT 846995 25 100.0 44 ......................... TGCATTTATTTCCTCGGCGATTTGGGGTAGGATTTTGGTGGGGG 846926 25 100.0 43 ......................... CGCGCCTGCATATCTCATCTGTCTCTCTGTGTCACTTTCTTAC 846858 25 100.0 44 ......................... TTAGAGTAAGCAGAGTGTATATCCCACGTTCACGCATTGATCTA 846789 25 100.0 42 ......................... TTAGCACTTCCTCAGCGGCATATGCTTTAGACCACCCCCCGT 846722 25 100.0 35 ......................... GCTAGATATGGTCTGCCAGTAGCGCCAAATACCTT 846662 25 100.0 41 ......................... TACAAAGAGTTGACTTTTATTGAGAGAATTATTTTGTTTTA 846596 25 100.0 39 ......................... GAGTCGACGGCGTCGAGTATACGGGCTCCGCGGTGGAGT 846532 25 100.0 40 ......................... TTGATATTAATCTCAACAACACCTCCACCCTCCAGCACTA 846467 25 100.0 43 ......................... CTGCAATATCAGACCCCACATCCCTATTACTGATAATGTCTGT 846399 25 100.0 36 ......................... ATAAATTAACTTCGTGTACACTCAGACCGCCGTGAG 846338 25 100.0 43 ......................... CAGTAGGCATTGTTGCTGTGGTGATTGTGAACAAGTCCTCGAT 846270 25 100.0 41 ......................... CTGAGTTGTGGCTTAAACACGACGCGACATCAATACCTCTG 846204 25 100.0 42 ......................... AGGAAGGTAGTCAAGGTGCTCAGACGCAACGGAGGCGTAGAG 846137 25 96.0 42 ......T.................. TCTCATAATCATAAGCACACAGCCACTCGCTGAAATCATAAG 846070 25 100.0 43 ......................... TCCGGGGTCCTGCCGTGGAGGACTGGCACTATTGGCAGGTCGA 846002 25 100.0 41 ......................... CCGTTGCACTTGTACGCAACTAGGAGCGGTACGTCTCTGAT 845936 25 100.0 40 ......................... TTGCTATTCTGCGTATGCTCTCGTACAGCTCTTTAAGCCT 845871 25 100.0 42 ......................... CCATTCGGGGGATCTAAGTTGATCTTCTCTAATATAATCCTG 845804 25 92.0 0 ......T................G. | ========== ====== ====== ====== ========================= ============================================ ================== 38 25 99.7 40 GAAGAACCTACAAAAGAATTGAAAC # Left flank : CTTAAGGGCGGTGGAGCCAGGCCCAATAAAGGCAGGCCGCTGAACTCTCACAAGCCCCTTAGACTTGAGAAAATCCGCAACCCTAACCCGCAACTCGTCATCAGAAATGTCGTAGATAACCAAGAGATACAGCTCCACACCAAACACCCCCCCCCCTTTAAAAACATTAAGAAGCAACCACAGTAAAACCCCCCATATAAAAACTCTTATAGAGAGATTTCAAACCGCTGGATAAATTTACAAACTAAAAAGAAAATTATAAATTTAATAAAAATCATGCGCTTTAGAAATATCAAAATCGAGAAAAATCCCCCAGACACCTACTCAGACAATTTGATATTCCACTTTTAAAAAATATATCTTTTCTATAAACCTACCCAGTGTTTTGGGTGGCGCGCCGTGGCGGCCGCCTTAGCCTAAACCGCGCCGTGTAAAAGTCTCGACGGCACACGAAACATTTATAAAAGAGCAAAAACCAAAATCCCAAATAAAAACCCACA # Right flank : GCGATATACGTCGTGTTGAGGTGCATCATATAGTCTTGATGCTGGGCTCCCTTTGGGGTGGTTGGGGTGTCTGTGGAGGGGTGTGGTTTGGGACGTGTTTGAAGTCTGGGGGGTGGGGGCTCAAGGTTCTTAGAGTGGAGTGTTAGGTGGTTTTAGTTGTTTTTCTGTTTTTGTGTGGGGTTGTGCGCGTTGGGTTTGTCGTGGCTGTGGTTGAGGCCGCGGGGTTGGCTGGGGTCTTAGGTGTGGGTTTTTGGTGTGGTGGGGTGCTGGGGGTGGGGGCCTTCTGGGCGCCGTGTCTGGGATTGTGGTTGACGGCTTTGGATAGAGTGTGGTAGGGGTGGATGTGGCGTGGCCCAGGCGGGGTTTTGCTCCCCTCTTTGGGATTTGGCCGTGGTTGTGGCTGTGGGTTTTTCTGGCTTCTGGGTGGGGGGGGGCCATGTGTCTTGGCGGCGGTGGGCGCCGGTTTGGGGCTGTCTTCCTCTTGTTATCTGCTGTCGATA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGAACCTACAAAAGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 7 852183-853584 **** Predicted by CRISPRDetect 2.4 *** >NC_016645.1 Pyrobaculum ferrireducens strain 1860, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =========================================== ================== 852183 25 100.0 38 ......................... TGTGCTAGTGAGTTTTGTCGCAGTTGCGAATTCTGTGA 852246 25 100.0 42 ......................... TCAGTTGAAAGCCGAGATAGTTGAAAGGTGGGTGGGGACAGT 852313 25 100.0 42 ......................... TTAGTAGGTTTATAGGATAATGGCCTACCCCTTTTACCACCA 852380 25 100.0 41 ......................... ATTTTGCCGAAATACCTACTCCACTGGGGACACACAATTTT 852446 25 100.0 41 ......................... GATGGAAAAAAAGGGGGGGCTACTTGAATACGTACGTCACA 852512 25 100.0 40 ......................... TTAGATGGCTTACTACTGGAGGGGCGCCCACGCGCACTGT 852577 25 100.0 38 ......................... TCGTGCGGCAGTGAAAGCAACGCGAAAAACGCCGCCTG 852640 25 100.0 42 ......................... AGCCAAATACCGCTCATAGAAGCGAGTTAGTAAACTGGCCTC 852707 25 100.0 36 ......................... TTAATGTGAAGAGCGTAGCTCCTCTTGCCCCACGGC 852768 25 100.0 40 ......................... ATGATAGCCCGCTCCTCCTCACCCTCAGGCATACAGCAGT 852833 25 100.0 42 ......................... GTTGTACTAGATGGCTGTATAGGACTTAAATATGTGACAACA 852900 25 100.0 42 ......................... TTAATAGGTACGTATACTAAGATGCCCCTCCTCCTAGTCTTT 852967 25 100.0 38 ......................... GCCTATATACCGCGGTGCGCAGGTCGCGCCTGACTTCT 853030 25 100.0 42 ......................... ATTTTTGCGCGCGCTACGACATCCAGCGCCTGTATGCTACGT 853097 25 100.0 40 ......................... TACATCTAGCACCCCATATTTCCTAAATGAACCTTTCATT 853162 25 100.0 43 ......................... TATACCTGCTTATTTTCTCGTTTATTTCAAGTATTTCAAAAAT 853230 25 100.0 41 ......................... TAATCACCCCAAATTCCACCATACATAACGTAAATGCGGTA 853296 25 100.0 42 ......................... ACAGCACTGGGTCGTCTGTAGGCGACAGTCCCGTGTACCTCA 853363 25 100.0 42 ......................... ACTGTAGAGCTTTAGCTGATAGCTCGACCGTGGCGGCTTCTT 853430 25 100.0 40 ......................... TGATTGGAATTGGGGGGAGAATTGGGGGGCGGTATGCGCG 853495 25 100.0 40 ......................... TTTATTGTAGCGTTGGGCTTAGCATTCCATATCTCAGCCG 853560 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= =========================================== ================== 22 25 100.0 41 GAAGAACCTACAAAAGAATTGAAAC # Left flank : GCATATGCCTCGACGAGCGCTACCAGTGCTAGCGGCGCCGCGGCCCAGCAACCAAGAACCAACCCCATTCAGAAACCCGCCAAGCACGGCGACACGCGACGCTACCCCCTCCTGAGGACTGCTTAATACATTCTAGAGACCAGCTACCGCAACCTCTCTAGACATTAATAAAACGGATAGAAATGCAATGTCTCGCTTGACTTAACTTAAGCATTAAATTTCAAACCTCTGGATAAATTTACCAACTCAAATAATAATTTTACATATTATTCATAACATTCTCTTTACTCATATAAAATTCATTTGTGAAGCCTCTTCCTATCGCGCGGTCAGTAGTTATTAAACTAGTATAATTTAGGCAATGTTTATCTTTTTACCCAGTGTTTTGGATGGCGCGCCGTGGCGGCCGCCTTTGCCTAAACCGCGCCGTGTAAAAGTCTCGACGGCAGACGAAACATTTATAAAAGAGCAAAAACTAAGATCCCAAATAAAAACCCACA # Right flank : CAGAAAATATGTGGCATCGGATTCTGCAGGTTTTGATGTGGATGGTGGTGTAGTGGGTGATGGAGGTGACGGCGGCGGCCAGCCACAGGCTGAATAGGAGAAGCCAGCTGTAGATCGTGCCCTCGTAGTTAATTATTAAGATCAGAGCGGCGTAAGTGGCGGCTAGGTACAGGGCCATTGAAGGGATTTTTCTTCTGTCGTGAATCGCGTATGTGGTTGCTACGGCGAGGGGGACAGTGGCTAGTACGTAAATGCCGAATGCGTCAATCAAATCGAGGGCTCTCGACATATAGGGCCCCACAACCGCGGCGAATATGAGCGGCAGAGTGAGCACGAGGTAGAGCTCGAGGGAGCGGCTTATCAAAGCGTCGAATAGTGTTGGCATCCTGTCTCTTATCAACACGGCAACAGCTATGACGGCTACTACGGCTAGAGTTATGACTCCGGTAAATCCCCACGGCTTTATAATTTCCAGCTCCACGTGTCTATCATGCCCAGCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGAACCTACAAAAGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 8 2235098-2235868 **** Predicted by CRISPRDetect 2.4 *** >NC_016645.1 Pyrobaculum ferrireducens strain 1860, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================= ================== 2235098 25 100.0 41 ......................... CTATTTGGAATTTGGGGGTTTATAAATGTTTCGCCCCTTAC 2235164 25 100.0 43 ......................... GCCCCGCGGAGGACCTCCGCGAGTCTCCTCAAGACGTGTCTGA 2235232 25 100.0 42 ......................... CTCCCCTTGGCGTTTTGTATCAGCTCCACGAGCCTCTTCACC 2235299 25 100.0 43 ......................... CTAGCAACTTTGAACACGTCCATGAGCTTGGCCCACGCAACTG 2235367 25 100.0 44 ......................... TCCCACCCTTTCCCCCTTCTTCTCGTGGACTGCGTTAAGCTTCT 2235436 25 100.0 45 ......................... TGATGGTGGTGTAGCTCATATGAGCACCCACACCTCCCTCTGCCT 2235506 25 100.0 38 ......................... ACAAATGTCGGGGTCCGGGGGGGCCTGGGTTTGTCAAG 2235569 25 100.0 42 ......................... TCTGGGCATGTGCTCCCGTGGCTCCGCGGTTTAAAAATCCGA 2235636 25 100.0 44 ......................... TACGTAGCCAGGGACCCGTCCTCAAGCTGATCTGTGAACGTGAT 2235705 25 100.0 45 ......................... TGGATCGGTCTAGAGAACGGTAAAGCTGGCGGTAATATGCTCACA 2235775 25 100.0 44 ......................... GCGAGGCGGTTCGCAGGCGCGGCGCGGGCGGCGCACTGTGGGGA 2235844 25 92.0 0 ..A...............A...... | ========== ====== ====== ====== ========================= ============================================= ================== 12 25 99.3 43 CCGGAAATCAAAAGATAGTTGAAAC # Left flank : GCAGAGCCACGGAGAGGGGGTCTGAGAGGTTGCCTAGATAAACCGTGTCCCTCGGCCGCCACCCCAGCTTCACGTAGAGCCTCAACCCCAGAATCCACATGTAGCCAGAGACACCGCCGATATCAACCCTCCCTATGTATAGGTACATATGGCTCTGTACTGGCAACATGCGCCCTCAGCCACCCGCGCCTTCTGAGCCGCTGTCTCCAACACCCTCACTCCAACCCCAAACATACCCCCCTGGAATTCCGCACATTTAACCATTTTTACATGTCCAGAGCCCCGTTTACAAACATATAAACATGTGCACGGCGCGGCGAAGAACGGCGCTGGGTTTGGGCGTCTCTTAAGCATCCAGCCCGCCGCCACTGCGAAGAATGGCGTGCGGCTAAATCACACAGCGGAATATATGAATGTAAGGCGCTACCCAAAAGCGTCCACCGAAGAGACAAAAAACAGACGAAAAACTTAAAAACACACAAAAACCGCAAAAACCAGCC # Right flank : CTCTACTAATGCCGAGCTGATAGACACACGCCATACATTAATTCACAATTTGGGGATGTGTTTCTACGGTCATGGGCAAGCCGGCGCCCGCCCCGCCTCCCGCGAGGGCTCCGGGAGGCGACGCTGTGTATAATCCGCGCCTGCCGAAGGGGCGGCCCCGCCCGGGCGCGCCACAGCGCCCGCCCGGGCCCCGCGCCCCCCTCCCCGAGACGCCCGGAGAGTAGAAGGGGGGTATAGTTCCACTAGGTAGCCGAATTCGTCAATGACCAGACGCGGCCTGTCCACCTCCTTAGCAAAGTAGATCGGGGCTCCCCCAGGCCTCCCGGCTCGACTTTTCTAGAAACTCCGCTATGCATGTAGAGGTTATCCCTCACCGAAGTCAAGAAGTAGAGACACCTCTTCCCCTCTATAAACCGCCTTAAAATCTCCGTCTTCCCCACATGCTGTACAACACCAACAGTTCAGCCCTCCCAGACCGCTACCTCTCCTCAAGCCACGCC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGGAAATCAAAAGATAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.00%AT] # Reference repeat match prediction: F [matched GTGGAAATCAAAAGATAGTAGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], //